Wall clock time and date at job start Tue Mar 31 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37787 * 119.90514 * 2 1 4 4 C 1.39689 * 119.90575 * 179.97438 * 3 2 1 5 5 C 1.47572 * 120.14153 * 179.97438 * 4 3 2 6 6 O 1.21581 * 119.99897 * 134.23514 * 5 4 3 7 7 N 1.34775 * 120.00028 * 314.24319 * 5 4 3 8 8 C 1.46500 * 120.00195 * 4.81822 * 7 5 4 9 9 C 1.46501 * 119.99928 * 184.82043 * 7 5 4 10 10 H 1.08996 * 109.47185 * 359.97438 * 9 7 5 11 11 C 1.53007 * 109.47224 * 239.99967 * 9 7 5 12 12 C 1.50702 * 109.47118 * 120.00101 * 9 7 5 13 13 H 1.07994 * 120.00125 * 359.97438 * 12 9 7 14 14 C 1.37876 * 119.99961 * 180.02562 * 12 9 7 15 15 N 1.31513 * 120.00106 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 119.99983 * 179.97438 * 14 12 9 17 17 H 1.48499 * 109.47212 * 59.99885 * 16 14 12 18 18 H 1.48506 * 109.47154 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47316 * 299.99837 * 16 14 12 20 20 C 1.39937 * 119.71891 * 0.27882 * 4 3 2 21 21 F 1.35099 * 120.09559 * 179.70385 * 20 4 3 22 22 C 1.38160 * 119.80543 * 359.42349 * 20 4 3 23 23 C 1.38537 * 120.09264 * 0.57755 * 22 20 4 24 24 F 1.35095 * 119.85511 * 179.70419 * 23 22 20 25 25 H 1.09001 * 109.46488 * 90.00226 * 1 2 3 26 26 H 1.08994 * 109.46493 * 209.99890 * 1 2 3 27 27 H 1.08998 * 109.47320 * 329.99921 * 1 2 3 28 28 H 1.08006 * 120.04579 * 0.02562 * 3 2 1 29 29 H 1.08999 * 109.47009 * 95.21229 * 8 7 5 30 30 H 1.09003 * 109.47140 * 335.21232 * 8 7 5 31 31 H 1.08999 * 109.47057 * 215.21229 * 8 7 5 32 32 H 1.09000 * 109.47180 * 59.99784 * 11 9 7 33 33 H 1.08998 * 109.47314 * 179.97438 * 11 9 7 34 34 H 1.09005 * 109.46453 * 300.00047 * 11 9 7 35 35 H 0.97000 * 120.00244 * 179.97438 * 15 14 12 36 36 H 1.07999 * 119.94917 * 180.27827 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1940 1.1944 0.0000 4 6 3.5908 1.1944 0.0005 5 6 4.3318 2.4706 0.0000 6 8 5.2720 2.6280 0.7546 7 7 3.9663 3.4617 -0.8370 8 6 2.7706 3.3131 -1.6703 9 6 4.7647 4.6877 -0.9135 10 1 5.6076 4.6158 -0.2262 11 6 3.8956 5.8871 -0.5300 12 6 5.2763 4.8671 -2.3196 13 1 5.0315 4.1404 -3.0801 14 6 6.0576 5.9584 -2.6349 15 7 6.3561 6.8431 -1.7088 16 14 6.6923 6.1805 -4.3777 17 1 5.5438 6.2789 -5.3140 18 1 7.5015 7.4232 -4.4553 19 1 7.5356 5.0161 -4.7496 20 6 4.2846 -0.0209 -0.0048 21 9 5.6355 -0.0297 -0.0104 22 6 3.5839 -1.2116 0.0014 23 6 2.1986 -1.2024 0.0009 24 9 1.5183 -2.3696 0.0010 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5138 28 1 1.6531 2.1293 0.0004 29 1 1.9201 3.7777 -1.1714 30 1 2.5660 2.2540 -1.8267 31 1 2.9361 3.7972 -2.6328 32 1 3.5256 5.7574 0.4870 33 1 4.4897 6.7992 -0.5865 34 1 3.0524 5.9591 -1.2171 35 1 6.9061 7.6107 -1.9305 36 1 4.1170 -2.1509 0.0018 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134862202.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:22 Heat of formation + Delta-G solvation = -97.008336 kcal Electronic energy + Delta-G solvation = -22411.270943 eV Core-core repulsion = 18724.757864 eV Total energy + Delta-G solvation = -3686.513079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -49.22063 -48.86733 -39.91631 -38.12289 -35.43232 -33.05154 -32.76602 -31.24149 -29.05794 -26.97345 -26.27997 -25.26286 -23.92199 -22.72323 -20.85524 -18.79334 -18.20675 -17.46987 -16.88006 -16.36438 -16.05353 -15.67761 -15.43332 -15.23486 -14.74056 -14.51741 -14.29644 -14.20239 -13.59123 -13.44935 -13.07265 -12.58757 -12.53754 -12.24620 -12.17659 -11.92271 -11.65826 -11.50948 -11.28083 -11.07266 -10.86971 -10.75164 -10.30625 -10.19586 -9.32395 -9.20733 -9.06177 -8.65154 -8.45755 -7.69225 -6.10419 -4.18947 0.60812 0.85266 2.90501 3.26496 3.31843 3.32496 3.44745 3.69860 3.83251 4.25087 4.36549 4.39650 4.48640 4.73443 4.93989 5.20957 5.24940 5.35833 5.51145 5.53904 5.62119 5.69224 5.85499 5.88258 5.92359 5.98477 6.30124 6.56049 6.71129 6.78152 7.00478 7.32329 7.46383 7.66600 7.96380 8.13530 8.40443 8.74240 8.91753 9.47425 10.94947 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024523 B = 0.004623 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.524418 B = 6054.770025 C = 6320.713304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.139 4.139 3 C -0.036 4.036 4 C -0.155 4.155 5 C 0.546 3.454 6 O -0.534 6.534 7 N -0.581 5.581 8 C 0.074 3.926 9 C 0.258 3.742 10 H 0.065 0.935 11 C -0.146 4.146 12 C -0.529 4.529 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.886 5.886 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.277 1.277 20 C 0.172 3.828 21 F -0.113 7.113 22 C -0.196 4.196 23 C 0.138 3.862 24 F -0.130 7.130 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.152 0.848 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.012 0.988 33 H 0.094 0.906 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.553 -12.898 1.688 18.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C -0.055 4.055 4 C -0.160 4.160 5 C 0.331 3.669 6 O -0.413 6.413 7 N -0.311 5.311 8 C -0.070 4.070 9 C 0.159 3.841 10 H 0.083 0.917 11 C -0.204 4.204 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.136 4.136 15 N -0.524 5.524 16 Si 0.727 3.273 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.202 1.202 20 C 0.151 3.849 21 F -0.091 7.091 22 C -0.216 4.216 23 C 0.118 3.882 24 F -0.108 7.108 25 H 0.095 0.905 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.169 0.831 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.910 -12.621 2.094 17.480 hybrid contribution 0.506 -0.126 -1.051 1.173 sum -11.404 -12.747 1.043 17.136 Atomic orbital electron populations 1.20716 0.89288 1.03611 1.03136 1.19868 0.97588 0.91266 1.05240 1.21145 0.91699 0.98247 0.94388 1.20412 0.94600 0.94165 1.06807 1.17872 0.84020 0.83028 0.81939 1.90790 1.29096 1.81146 1.40226 1.48187 1.26801 1.18096 1.38026 1.21901 0.87370 1.00776 0.96925 1.19015 0.89715 0.77497 0.97908 0.91737 1.22080 0.99427 1.02825 0.96087 1.21253 1.32389 1.08392 0.94734 0.92220 1.24881 0.95662 0.95555 0.97552 1.69865 1.37264 1.12462 1.32842 0.86536 0.78947 0.77564 0.84232 1.20202 1.21114 1.20207 1.17219 0.77601 0.92173 0.97911 1.91606 1.27593 1.97141 1.92787 1.20910 0.93039 0.98763 1.08841 1.17221 0.88831 0.81149 1.00996 1.91503 1.79737 1.46046 1.93533 0.90472 0.91056 0.90565 0.83067 0.93343 0.92138 0.89991 0.96899 0.88706 0.95060 0.92545 0.83025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.83 36.01 0.35 -0.50 16 2 C -0.14 -1.49 5.88 -104.61 -0.62 -2.11 16 3 C -0.04 -0.45 7.11 -39.20 -0.28 -0.73 16 4 C -0.16 -2.57 5.04 -104.91 -0.53 -3.10 16 5 C 0.55 11.66 7.07 -12.45 -0.09 11.57 16 6 O -0.53 -13.66 15.86 5.29 0.08 -13.57 16 7 N -0.58 -12.31 2.75 -176.48 -0.49 -12.80 16 8 C 0.07 1.19 8.05 59.85 0.48 1.68 16 9 C 0.26 6.55 2.63 -69.08 -0.18 6.36 16 10 H 0.06 1.91 6.91 -51.93 -0.36 1.55 16 11 C -0.15 -3.42 8.97 37.16 0.33 -3.08 16 12 C -0.53 -14.15 8.03 -34.44 -0.28 -14.42 16 13 H 0.06 1.57 7.25 -52.49 -0.38 1.18 16 14 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 15 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 16 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 C 0.17 2.71 7.25 -38.97 -0.28 2.43 16 21 F -0.11 -2.07 16.42 2.25 0.04 -2.03 16 22 C -0.20 -2.43 9.99 -39.50 -0.39 -2.82 16 23 C 0.14 1.58 7.24 -39.30 -0.28 1.29 16 24 F -0.13 -1.41 16.46 2.25 0.04 -1.38 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.52 7.63 -51.93 -0.40 0.12 16 27 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 28 H 0.15 1.65 6.28 -52.48 -0.33 1.33 16 29 H 0.05 0.66 7.59 -51.93 -0.39 0.27 16 30 H 0.06 0.83 5.34 -51.93 -0.28 0.55 16 31 H 0.08 1.41 6.96 -51.93 -0.36 1.05 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 34 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 308.51 15.07 4.65 4.65 Total: -1.00 -31.03 308.51 -5.96 -37.00 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.03 Total: -1.77 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.86 Total: -1.73 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.14 Total: -37.01 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.57 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.07 Total: -3.41 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.03 -5.96 -37.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134862202.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.011 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds