Wall clock time and date at job start Tue Mar 31 2020 06:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35378 * 126.13696 * 2 1 4 4 Cl 1.73598 * 126.04420 * 0.02562 * 3 2 1 5 5 C 1.39935 * 107.90767 * 180.28315 * 3 2 1 6 6 N 1.30848 * 108.21108 * 359.73103 * 5 3 2 7 7 N 1.35052 * 126.13625 * 179.82622 * 2 1 3 8 8 C 1.46493 * 126.03424 * 359.97438 * 7 2 1 9 9 N 1.46892 * 109.47349 * 269.71177 * 8 7 2 10 10 C 1.46904 * 111.00378 * 189.99908 * 9 8 7 11 11 C 1.50704 * 109.46589 * 75.59146 * 10 9 8 12 12 H 1.07996 * 120.00197 * 355.41446 * 11 10 9 13 13 C 1.37882 * 119.99823 * 175.41915 * 11 10 9 14 14 N 1.31517 * 119.99713 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99751 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47421 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47047 * 120.00151 * 15 13 11 18 18 H 1.48504 * 109.46634 * 239.99714 * 15 13 11 19 19 C 1.46907 * 110.99922 * 66.04900 * 9 8 7 20 20 C 1.52994 * 109.47350 * 187.93246 * 19 9 8 21 21 C 1.52999 * 117.50227 * 243.53916 * 20 19 9 22 22 C 1.52995 * 117.50173 * 174.87535 * 20 19 9 23 23 H 1.08995 * 109.47079 * 270.17344 * 1 2 3 24 24 H 1.08997 * 109.47040 * 30.17259 * 1 2 3 25 25 H 1.08998 * 109.47049 * 150.16642 * 1 2 3 26 26 H 1.07993 * 125.89227 * 179.75980 * 5 3 2 27 27 H 1.08995 * 109.47404 * 29.71492 * 8 7 2 28 28 H 1.09002 * 109.47032 * 149.71437 * 8 7 2 29 29 H 1.09000 * 109.47390 * 195.58592 * 10 9 8 30 30 H 1.08991 * 109.46806 * 315.59407 * 10 9 8 31 31 H 0.97000 * 119.99431 * 179.97438 * 14 13 11 32 32 H 1.08994 * 109.46999 * 307.93557 * 19 9 8 33 33 H 1.09005 * 109.46744 * 67.93209 * 19 9 8 34 34 H 1.09008 * 115.54933 * 29.20678 * 20 19 9 35 35 H 1.08998 * 117.49660 * 359.97438 * 21 20 19 36 36 H 1.09000 * 117.50478 * 145.02296 * 21 20 19 37 37 H 1.09001 * 117.50250 * 214.98273 * 22 20 19 38 38 H 1.09004 * 117.49910 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3054 1.0933 0.0000 4 17 1.7741 2.7460 0.0006 5 6 3.6345 0.6556 -0.0066 6 7 3.6341 -0.6529 -0.0046 7 7 2.3034 -1.0907 0.0033 8 6 1.8549 -2.4853 0.0081 9 7 1.7121 -2.9490 1.3945 10 6 1.4954 -4.4011 1.4444 11 6 2.7977 -5.1126 1.1816 12 1 3.6800 -4.5459 0.9231 13 6 2.8626 -6.4869 1.2710 14 7 1.7883 -7.1769 1.5861 15 14 4.4767 -7.3688 0.9445 16 1 5.5264 -6.3728 0.6113 17 1 4.8800 -8.1274 2.1557 18 1 4.3064 -8.3074 -0.1936 19 6 0.6294 -2.2314 2.0808 20 6 0.6386 -2.5946 3.5670 21 6 -0.5855 -3.3244 4.1236 22 6 -0.3413 -1.8561 4.4808 23 1 -0.3633 0.0031 1.0276 24 1 -0.3633 0.8884 -0.5165 25 1 -0.3633 -0.8915 -0.5112 26 1 4.5095 1.2885 -0.0119 27 1 0.8938 -2.5596 -0.5007 28 1 2.5883 -3.1046 -0.5084 29 1 1.1220 -4.6792 2.4299 30 1 0.7663 -4.6858 0.6859 31 1 1.8339 -8.1438 1.6487 32 1 0.7770 -1.1574 1.9683 33 1 -0.3282 -2.5143 1.6436 34 1 1.6123 -2.8572 3.9807 35 1 -1.3976 -3.5454 3.4310 36 1 -0.4173 -4.0668 4.9037 37 1 -0.0126 -1.6331 5.4959 38 1 -0.9930 -1.1117 4.0232 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156630574.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:48 Heat of formation + Delta-G solvation = 86.047442 kcal Electronic energy + Delta-G solvation = -20445.513423 eV Core-core repulsion = 17351.027669 eV Total energy + Delta-G solvation = -3094.485753 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.39017 -39.35411 -37.37826 -37.00011 -34.85272 -33.61116 -32.38547 -29.58715 -28.06529 -27.69947 -25.67251 -23.33142 -23.12634 -22.25182 -21.11875 -20.73463 -18.62401 -18.06833 -17.21743 -16.80553 -16.39268 -16.04992 -15.50797 -15.29964 -15.11715 -14.63237 -14.39390 -14.15069 -14.01064 -13.53858 -13.38123 -13.25645 -13.09763 -12.74438 -12.64437 -12.59154 -12.35628 -12.30697 -12.21220 -11.95564 -11.42203 -11.40039 -11.18250 -10.76903 -10.58756 -10.46211 -9.37533 -9.15540 -8.21374 -6.29870 0.72460 1.02048 1.37838 1.40450 1.52922 1.64363 1.81577 2.38919 2.87519 3.09020 3.16862 3.56817 3.61637 3.88166 3.94130 4.03499 4.11948 4.18039 4.39615 4.42446 4.49732 4.52027 4.59847 4.74870 4.77793 4.92309 4.98334 5.01839 5.08677 5.19773 5.26601 5.36696 5.43856 5.62128 5.83926 6.04102 6.20666 6.46107 6.67407 6.84238 7.39322 8.88327 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016404 B = 0.005261 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.445943 B = 5320.924460 C = 6561.762999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.101 3.899 3 C -0.201 4.201 4 Cl -0.033 7.033 5 C 0.058 3.942 6 N -0.312 5.312 7 N -0.354 5.354 8 C 0.311 3.689 9 N -0.557 5.557 10 C 0.218 3.782 11 C -0.524 4.524 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.926 5.926 15 Si 0.958 3.042 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.276 1.276 19 C 0.087 3.913 20 C -0.161 4.161 21 C -0.183 4.183 22 C -0.151 4.151 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.080 0.920 26 H 0.212 0.788 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.031 0.969 30 H -0.024 1.024 31 H 0.264 0.736 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 16.661 -1.408 17.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.029 4.029 3 C -0.240 4.240 4 Cl -0.005 7.005 5 C -0.128 4.128 6 N -0.132 5.132 7 N -0.138 5.138 8 C 0.101 3.899 9 N -0.283 5.283 10 C 0.092 3.908 11 C -0.563 4.563 12 H 0.070 0.930 13 C -0.186 4.186 14 N -0.566 5.566 15 Si 0.783 3.217 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.201 1.201 19 C -0.040 4.040 20 C -0.180 4.180 21 C -0.220 4.220 22 C -0.188 4.188 23 H 0.115 0.885 24 H 0.125 0.875 25 H 0.099 0.901 26 H 0.229 0.771 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.049 0.951 30 H -0.007 1.007 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.772 15.483 -1.145 16.242 hybrid contribution -0.160 -0.361 -0.417 0.575 sum -4.932 15.121 -1.562 15.982 Atomic orbital electron populations 1.20802 0.84725 1.05310 1.04831 1.21265 0.96134 0.86119 0.99388 1.20513 0.93000 0.86711 1.23774 1.98290 1.90090 1.14263 1.97881 1.24291 0.97794 0.91698 0.99062 1.77566 0.98477 1.12841 1.24315 1.48635 1.03461 1.06018 1.55647 1.21939 0.99673 0.76796 0.91513 1.61859 1.45232 1.07335 1.13869 1.19340 0.94989 0.80398 0.96026 1.21451 0.96518 0.91603 1.46699 0.93020 1.25687 0.99647 0.98230 0.95030 1.70046 1.29820 1.07273 1.49443 0.85507 0.79908 0.78354 0.77898 1.19692 1.20523 1.20149 1.21840 0.91813 0.98137 0.92232 1.22094 0.94900 1.06418 0.94592 1.23021 0.99463 0.95802 1.03685 1.23053 1.01336 0.94306 1.00132 0.88511 0.87540 0.90149 0.77119 0.90016 0.88919 0.95130 1.00670 0.92656 0.90179 0.94473 0.90214 0.88770 0.89618 0.87861 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 8.83 71.24 0.63 -1.29 16 2 C 0.10 2.74 5.68 41.40 0.24 2.98 16 3 C -0.20 -5.29 6.64 22.02 0.15 -5.15 16 4 Cl -0.03 -0.70 28.88 -2.72 -0.08 -0.78 16 5 C 0.06 1.66 12.02 85.25 1.02 2.69 16 6 N -0.31 -11.25 12.57 -56.98 -0.72 -11.97 16 7 N -0.35 -11.99 3.58 -344.05 -1.23 -13.22 16 8 C 0.31 11.49 5.83 170.81 1.00 12.49 16 9 N -0.56 -22.97 4.58 -913.19 -4.18 -27.16 16 10 C 0.22 10.85 4.62 85.56 0.40 11.24 16 11 C -0.52 -29.09 8.61 25.60 0.22 -28.87 16 12 H 0.05 2.95 7.65 -2.91 -0.02 2.93 16 13 C 0.01 0.72 5.46 84.66 0.46 1.18 16 14 N -0.93 -53.59 13.29 21.45 0.28 -53.31 16 15 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 19 C 0.09 2.90 4.35 86.30 0.38 3.27 16 20 C -0.16 -5.41 4.56 -10.80 -0.05 -5.45 16 21 C -0.18 -5.46 9.92 30.62 0.30 -5.16 16 22 C -0.15 -3.72 10.25 30.62 0.31 -3.40 16 23 H 0.10 1.71 6.77 -2.39 -0.02 1.70 16 24 H 0.11 1.64 7.91 -2.39 -0.02 1.63 16 25 H 0.08 1.49 7.08 -2.39 -0.02 1.47 16 26 H 0.21 4.51 8.06 -2.91 -0.02 4.48 16 27 H 0.08 2.60 7.02 -2.39 -0.02 2.59 16 28 H 0.09 3.90 7.31 -2.39 -0.02 3.88 16 29 H 0.03 1.64 6.53 -2.39 -0.02 1.63 16 30 H -0.02 -1.27 8.00 -2.39 -0.02 -1.29 16 31 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 32 H 0.08 2.43 4.48 -2.39 -0.01 2.42 16 33 H 0.04 1.15 7.87 -2.38 -0.02 1.14 16 34 H 0.08 3.18 8.14 -2.38 -0.02 3.17 16 35 H 0.09 2.71 8.03 -2.39 -0.02 2.69 16 36 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -63.96 328.14 2.21 -61.75 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 1.06 Total: 13.76 kcal Atomic # 6 Polarization: -20.52 SS G_CDS: 5.05 Total: -15.47 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -5.85 Total: -105.64 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -63.96 2.21 -61.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156630574.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.795 kcal (2) G-P(sol) polarization free energy of solvation -63.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds