Wall clock time and date at job start Tue Mar 31 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.46990 * 2 1 4 4 C 1.53005 * 109.47363 * 119.99821 * 2 1 3 5 5 N 1.46901 * 109.46628 * 60.95704 * 4 2 1 6 6 C 1.46903 * 111.00046 * 73.43362 * 5 4 2 7 7 C 1.50697 * 109.46954 * 279.62173 * 6 5 4 8 8 H 1.08000 * 120.00251 * 2.96627 * 7 6 5 9 9 C 1.37875 * 120.00183 * 182.96480 * 7 6 5 10 10 N 1.31509 * 120.00514 * 179.97438 * 9 7 6 11 11 Si 1.86810 * 119.99821 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47179 * 89.99553 * 11 9 7 13 13 H 1.48499 * 109.46651 * 209.99981 * 11 9 7 14 14 H 1.48498 * 109.46712 * 329.99660 * 11 9 7 15 15 C 1.46900 * 110.99517 * 197.38335 * 5 4 2 16 16 C 1.50691 * 109.47375 * 66.05052 * 15 5 4 17 17 C 1.38648 * 120.06420 * 94.97408 * 16 15 5 18 18 C 1.38817 * 117.98413 * 180.02562 * 17 16 15 19 19 C 1.38773 * 117.95803 * 0.02562 * 18 17 16 20 20 Cl 1.73595 * 120.09225 * 180.02562 * 19 18 17 21 21 N 1.32030 * 119.81342 * 359.97438 * 19 18 17 22 22 N 1.28349 * 122.16213 * 0.02562 * 21 19 18 23 23 H 1.09000 * 109.47294 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47561 * 300.00075 * 1 2 3 25 25 H 1.08999 * 109.47400 * 59.99956 * 1 2 3 26 26 H 1.09002 * 109.47561 * 239.99924 * 2 1 3 27 27 H 1.09004 * 109.47298 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.46913 * 299.99743 * 3 2 1 29 29 H 1.09003 * 109.46960 * 60.00150 * 3 2 1 30 30 H 1.09001 * 109.47199 * 300.96159 * 4 2 1 31 31 H 1.09001 * 109.46958 * 180.95933 * 4 2 1 32 32 H 1.09004 * 109.47285 * 39.61928 * 6 5 4 33 33 H 1.08993 * 109.47478 * 159.61732 * 6 5 4 34 34 H 0.97006 * 120.00751 * 180.02562 * 10 9 7 35 35 H 1.09004 * 109.47239 * 306.04551 * 15 5 4 36 36 H 1.09009 * 109.46845 * 186.04797 * 15 5 4 37 37 H 1.08003 * 121.01189 * 359.97438 * 17 16 15 38 38 H 1.08005 * 121.02470 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.5693 -2.1127 1.2377 6 6 2.3015 -2.9080 0.2430 7 6 1.7228 -2.6568 -1.1256 8 1 0.9258 -1.9389 -1.2515 9 6 2.2107 -3.3435 -2.2171 10 7 1.7054 -3.1247 -3.4113 11 14 3.5888 -4.5858 -1.9993 12 1 3.0091 -5.9256 -1.7280 13 1 4.4055 -4.6413 -3.2383 14 1 4.4473 -4.1776 -0.8584 15 6 1.6739 -2.7149 2.5736 16 6 0.7210 -2.0219 3.5130 17 6 -0.5413 -2.5501 3.7363 18 6 -1.3842 -1.8763 4.6095 19 6 -0.9112 -0.7153 5.2045 20 17 -1.9185 0.1710 6.3061 21 7 0.3075 -0.2872 4.9312 22 7 1.0858 -0.9112 4.1236 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9563 0.8900 30 1 1.6627 -0.2174 2.1392 31 1 3.1299 -0.7063 1.2579 32 1 3.3531 -2.6210 0.2510 33 1 2.2120 -3.9665 0.4867 34 1 2.0484 -3.6081 -4.1792 35 1 2.6934 -2.6042 2.9432 36 1 1.4213 -3.7737 2.5156 37 1 -0.8596 -3.4578 3.2451 38 1 -2.3780 -2.2439 4.8188 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167243991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:21 Heat of formation + Delta-G solvation = 54.837428 kcal Electronic energy + Delta-G solvation = -20465.156687 eV Core-core repulsion = 17369.317566 eV Total energy + Delta-G solvation = -3095.839121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17855 -37.76737 -36.99531 -34.28817 -33.28655 -32.87453 -31.90859 -28.28456 -26.81816 -26.40546 -24.77473 -24.38246 -22.36432 -20.71700 -19.11439 -17.82116 -17.37438 -16.88169 -15.79316 -15.60722 -14.90857 -14.55141 -14.13980 -13.89486 -13.77515 -13.20433 -12.81186 -12.62734 -12.53056 -12.24687 -12.02657 -11.68699 -11.63494 -11.42289 -11.24794 -11.19771 -10.62968 -10.49763 -10.34798 -10.21191 -10.05928 -9.95561 -9.76820 -9.62203 -9.56546 -9.04129 -8.54673 -7.50175 -6.06881 -4.03111 0.60783 0.66089 1.45605 3.24461 3.30066 3.33822 3.34856 3.98182 4.33372 4.39080 4.43388 4.60371 4.77868 4.87938 5.23352 5.39107 5.46602 5.64720 5.73319 5.76216 5.93200 5.99551 6.00925 6.14817 6.31196 6.34167 6.51220 6.58126 6.67269 6.68831 6.85598 6.93364 7.22298 7.41119 7.59815 7.80664 7.93040 8.49831 8.61712 9.05576 9.54116 11.04729 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023677 B = 0.004527 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.274207 B = 6183.936735 C = 6713.655282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C -0.143 4.143 4 C 0.067 3.933 5 N -0.518 5.518 6 C 0.162 3.838 7 C -0.510 4.510 8 H 0.099 0.901 9 C 0.070 3.930 10 N -0.898 5.898 11 Si 0.868 3.132 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.099 3.901 16 C 0.096 3.904 17 C -0.082 4.082 18 C -0.109 4.109 19 C 0.104 3.896 20 Cl -0.018 7.018 21 N -0.232 5.232 22 N -0.217 5.217 23 H 0.072 0.928 24 H 0.025 0.975 25 H 0.038 0.962 26 H 0.117 0.883 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.025 0.975 32 H -0.005 1.005 33 H 0.021 0.979 34 H 0.263 0.737 35 H 0.051 0.949 36 H 0.094 0.906 37 H 0.163 0.837 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.282 1.921 15.572 16.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.061 4.061 5 N -0.243 5.243 6 C 0.036 3.964 7 C -0.548 4.548 8 H 0.117 0.883 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.696 3.304 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.031 4.031 16 C -0.048 4.048 17 C -0.112 4.112 18 C -0.138 4.138 19 C -0.068 4.068 20 Cl 0.010 6.990 21 N -0.076 5.076 22 N -0.061 5.061 23 H 0.091 0.909 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.135 0.865 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.013 0.987 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.180 0.820 38 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.668 3.088 15.601 16.574 hybrid contribution 0.315 -1.679 0.117 1.712 sum -4.353 1.409 15.717 16.370 Atomic orbital electron populations 1.21601 0.95762 1.02329 0.98542 1.21446 0.96060 0.94127 1.00807 1.21818 1.00321 0.97414 1.00505 1.22188 0.96701 0.88757 0.98475 1.62063 1.57942 1.02518 1.01752 1.20295 0.91904 0.92288 0.91885 1.21268 1.20670 1.24295 0.88545 0.88300 1.24891 0.96367 0.96649 0.95277 1.69874 1.42416 1.42441 0.98926 0.86978 0.83161 0.82457 0.77840 1.20308 1.21301 1.19351 1.21032 0.95302 0.97635 0.89105 1.23079 0.94773 0.92538 0.94458 1.22395 0.92796 1.01072 0.94933 1.22209 1.02013 0.93731 0.95892 1.23443 0.93635 0.93488 0.96188 1.98408 1.64776 1.75560 1.60248 1.72932 1.01037 1.24565 1.09054 1.73105 1.24779 1.05541 1.02632 0.90896 0.95549 0.94296 0.86525 0.93469 0.93153 0.94023 0.91518 0.95627 0.98715 0.96071 0.92681 0.93086 0.88789 0.81972 0.82460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 8.40 37.15 0.31 -2.07 16 2 C -0.11 -2.07 2.40 -90.62 -0.22 -2.28 16 3 C -0.14 -2.41 9.19 37.16 0.34 -2.07 16 4 C 0.07 1.27 4.27 -3.82 -0.02 1.25 16 5 N -0.52 -9.87 3.70 -237.51 -0.88 -10.75 16 6 C 0.16 3.58 3.85 -4.98 -0.02 3.57 16 7 C -0.51 -13.22 7.79 -34.44 -0.27 -13.49 16 8 H 0.10 2.73 4.82 -52.49 -0.25 2.48 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -26.15 13.96 55.43 0.77 -25.38 16 11 Si 0.87 20.40 27.41 -169.99 -4.66 15.74 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.11 6.63 56.52 0.37 -5.73 16 15 C 0.10 1.53 5.26 -4.98 -0.03 1.50 16 16 C 0.10 1.39 5.83 -82.42 -0.48 0.91 16 17 C -0.08 -0.95 9.85 -39.22 -0.39 -1.34 16 18 C -0.11 -1.14 10.00 -39.17 -0.39 -1.54 16 19 C 0.10 1.31 7.37 -17.27 -0.13 1.19 16 20 Cl -0.02 -0.19 29.14 -51.86 -1.51 -1.70 16 21 N -0.23 -3.59 11.49 32.89 0.38 -3.21 16 22 N -0.22 -3.49 9.65 33.59 0.32 -3.17 16 23 H 0.07 1.52 6.73 -51.93 -0.35 1.17 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.12 2.70 5.14 -51.93 -0.27 2.43 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 1.24 5.57 -51.93 -0.29 0.95 16 31 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 32 H 0.00 -0.11 6.94 -51.93 -0.36 -0.47 16 33 H 0.02 0.46 6.91 -51.93 -0.36 0.10 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.09 1.27 7.71 -51.92 -0.40 0.87 16 37 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.16 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 320.69 15.07 4.83 4.83 Total: -1.00 -29.09 320.69 -7.34 -36.43 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -5.22 Total: -0.23 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.38 Total: -12.56 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.60 Total: -42.51 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.66 Total: 15.74 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.09 -7.34 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167243991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.269 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds