Wall clock time and date at job start Tue Mar 31 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00195 * 2 1 4 4 H 1.48497 * 109.47142 * 239.99710 * 3 2 1 5 5 H 1.48498 * 109.47350 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46743 * 119.99979 * 3 2 1 7 7 C 1.37879 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00297 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99697 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.47201 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47329 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.47155 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00176 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99687 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99803 * 180.02562 * 13 12 11 16 16 F 1.39902 * 109.47425 * 84.99980 * 15 13 12 17 17 F 1.39903 * 109.47218 * 324.99736 * 15 13 12 18 18 C 1.50706 * 109.47064 * 205.00095 * 15 13 12 19 19 C 1.38237 * 119.99761 * 270.00455 * 18 15 13 20 20 C 1.38235 * 119.99712 * 179.97438 * 19 18 15 21 21 C 1.38234 * 120.00220 * 359.94731 * 20 19 18 22 22 C 1.38233 * 120.00037 * 0.28719 * 21 20 19 23 23 C 1.38234 * 120.00191 * 89.97557 * 18 15 13 24 24 H 0.97002 * 119.99559 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47617 * 60.00150 * 9 7 2 26 26 H 1.08998 * 109.47615 * 299.99769 * 9 7 2 27 27 H 1.08995 * 109.46961 * 59.99444 * 10 9 7 28 28 H 1.08998 * 109.46400 * 300.00210 * 10 9 7 29 29 H 1.08995 * 109.47208 * 59.99136 * 11 10 9 30 30 H 1.09002 * 109.46778 * 299.99814 * 11 10 9 31 31 H 0.97007 * 120.00102 * 359.97438 * 12 11 10 32 32 H 1.08005 * 120.00088 * 359.96779 * 19 18 15 33 33 H 1.07999 * 119.99770 * 179.97438 * 20 19 18 34 34 H 1.08002 * 119.99744 * 180.02562 * 21 20 19 35 35 H 1.07998 * 120.00395 * 179.72811 * 22 21 20 36 36 H 1.07999 * 119.99990 * 0.02562 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2843 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4991 -0.0017 10 6 2.2451 -3.6622 -0.0015 11 6 1.4800 -4.9871 -0.0033 12 7 2.4319 -6.1007 -0.0037 13 6 1.9826 -7.3713 -0.0047 14 8 0.7902 -7.5929 -0.0048 15 6 2.9619 -8.5167 -0.0045 16 9 3.3513 -8.7972 1.3096 17 9 4.0868 -8.1687 -0.7600 18 6 2.3101 -9.7351 -0.6062 19 6 1.6256 -10.6231 0.2024 20 6 1.0272 -11.7403 -0.3495 21 6 1.1124 -11.9689 -1.7102 22 6 1.8010 -11.0835 -2.5181 23 6 2.3961 -9.9642 -1.9667 24 1 -0.4849 0.8401 -0.0004 25 1 0.6246 -2.5563 -0.8919 26 1 0.6239 -2.5575 0.8880 27 1 2.8711 -3.6048 0.8890 28 1 2.8724 -3.6039 -0.8909 29 1 0.8543 -5.0441 -0.8939 30 1 0.8524 -5.0454 0.8860 31 1 3.3857 -5.9235 -0.0032 32 1 1.5584 -10.4441 1.2654 33 1 0.4928 -12.4343 0.2822 34 1 0.6445 -12.8416 -2.1414 35 1 1.8713 -11.2644 -3.5805 36 1 2.9308 -9.2704 -2.5984 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171501767.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:50 Heat of formation + Delta-G solvation = -119.585420 kcal Electronic energy + Delta-G solvation = -21362.275860 eV Core-core repulsion = 17674.783765 eV Total energy + Delta-G solvation = -3687.492095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.49530 -47.49431 -39.89632 -39.10518 -35.69307 -33.43601 -32.37875 -31.35029 -31.24150 -27.98704 -26.29170 -23.49058 -22.94372 -22.12634 -20.95960 -20.38739 -18.43205 -18.24951 -17.84016 -16.55437 -16.29599 -15.70032 -15.36403 -15.00015 -14.94372 -14.73151 -14.45395 -14.22846 -13.96418 -13.81032 -13.52358 -13.46095 -12.93547 -12.74863 -12.33355 -11.93477 -11.85989 -11.57164 -11.44185 -10.91672 -10.81560 -10.67446 -10.19106 -9.94277 -9.50932 -9.29659 -9.24245 -9.16970 -9.07907 -8.40098 -6.04875 -4.08277 0.81765 1.08250 2.09863 2.55123 3.28996 3.30649 3.35462 3.37431 3.56414 3.73446 4.24399 4.41376 4.45918 4.66533 4.72558 4.78847 5.11640 5.24854 5.30995 5.47512 5.54721 5.64310 5.68835 6.03059 6.05274 6.07811 6.15704 6.16295 6.49171 6.58319 6.66665 6.90524 7.27045 7.58508 7.70110 7.84705 7.93234 8.33922 8.97970 9.56174 11.06378 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.036663 B = 0.002882 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.537899 B = 9714.334342 C = 9894.546017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.122 4.122 11 C 0.113 3.887 12 N -0.703 5.703 13 C 0.483 3.517 14 O -0.497 6.497 15 C 0.332 3.668 16 F -0.175 7.175 17 F -0.182 7.182 18 C -0.142 4.142 19 C -0.069 4.069 20 C -0.122 4.122 21 C -0.100 4.100 22 C -0.122 4.122 23 C -0.081 4.081 24 H 0.262 0.738 25 H 0.020 0.980 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.406 0.594 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 -23.816 -2.401 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.354 5.354 13 C 0.262 3.738 14 O -0.371 6.371 15 C 0.292 3.708 16 F -0.156 7.156 17 F -0.163 7.163 18 C -0.143 4.143 19 C -0.087 4.087 20 C -0.140 4.140 21 C -0.118 4.118 22 C -0.140 4.140 23 C -0.100 4.100 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.241 0.759 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.521 -23.809 -2.379 24.351 hybrid contribution 1.108 1.113 0.098 1.573 sum 5.629 -22.695 -2.281 23.494 Atomic orbital electron populations 1.69953 1.06076 1.26876 1.50367 1.25026 0.94865 0.99331 0.95184 0.86627 0.79559 0.83003 0.78631 1.20209 1.21248 1.20211 1.21153 0.92999 0.90886 1.51235 0.92625 1.19024 0.93779 0.90739 0.97731 1.21930 0.99900 0.92941 1.01258 1.21854 0.91713 0.84646 1.02612 1.46251 1.11882 1.05261 1.72016 1.20472 0.89441 0.84279 0.79608 1.90793 1.14829 1.83752 1.47705 1.19757 0.82024 0.93609 0.75403 1.93082 1.91651 1.94538 1.36342 1.93058 1.54282 1.93031 1.75879 1.19763 1.03542 0.95563 0.95453 1.20912 0.94519 0.93112 1.00156 1.21136 0.99920 0.97523 0.95422 1.21324 0.97515 0.99070 0.93849 1.21118 0.98190 0.94465 1.00249 1.20939 0.98032 0.97676 0.93308 0.92820 0.96197 0.96198 0.92430 0.92426 0.91061 0.91048 0.75896 0.85100 0.85193 0.85454 0.85191 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 11 C 0.11 1.94 5.67 -4.04 -0.02 1.91 16 12 N -0.70 -10.28 5.49 -60.30 -0.33 -10.62 16 13 C 0.48 7.34 7.22 -10.99 -0.08 7.27 16 14 O -0.50 -8.98 16.23 5.56 0.09 -8.89 16 15 C 0.33 4.31 2.22 -29.03 -0.06 4.25 16 16 F -0.18 -2.28 16.19 2.25 0.04 -2.24 16 17 F -0.18 -2.20 15.66 2.25 0.04 -2.16 16 18 C -0.14 -1.74 4.39 -104.62 -0.46 -2.20 16 19 C -0.07 -0.77 9.36 -39.58 -0.37 -1.14 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 21 C -0.10 -0.82 10.05 -39.58 -0.40 -1.22 16 22 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 23 C -0.08 -0.88 9.40 -39.58 -0.37 -1.25 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.41 5.04 8.03 -40.82 -0.33 4.71 16 32 H 0.13 1.36 7.60 -52.48 -0.40 0.96 16 33 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.13 1.26 7.60 -52.49 -0.40 0.86 16 LS Contribution 323.24 15.07 4.87 4.87 Total: -1.00 -31.54 323.24 -7.31 -38.85 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -4.47 Total: 0.35 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.25 Total: -10.63 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.41 Total: -36.48 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.07 Total: -4.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.54 -7.31 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501767.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.735 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds