Wall clock time and date at job start Tue Mar 31 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 120.00145 * 2 1 4 4 H 1.48497 * 109.47136 * 270.00581 * 3 2 1 5 5 H 1.48508 * 109.46834 * 30.00014 * 3 2 1 6 6 H 1.48491 * 109.47253 * 149.99727 * 3 2 1 7 7 C 1.37878 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00324 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00059 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47380 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47231 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47161 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99968 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00360 * 359.73034 * 13 12 11 15 15 C 1.50706 * 120.00081 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.47259 * 179.72770 * 15 13 12 17 17 C 1.38205 * 119.99975 * 264.72288 * 16 15 13 18 18 C 1.38428 * 120.00333 * 179.77249 * 17 16 15 19 19 F 1.35096 * 120.00488 * 180.27091 * 18 17 16 20 20 C 1.38477 * 119.99623 * 0.52492 * 18 17 16 21 21 C 1.38163 * 119.99908 * 359.72887 * 20 18 17 22 22 C 1.38425 * 120.00318 * 85.00175 * 16 15 13 23 23 F 1.35110 * 119.99803 * 359.97240 * 22 16 15 24 24 H 0.96995 * 120.00404 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47142 * 59.99655 * 9 7 2 26 26 H 1.09010 * 109.47143 * 300.00570 * 9 7 2 27 27 H 1.09004 * 109.46699 * 59.99971 * 10 9 7 28 28 H 1.08993 * 109.47124 * 300.00122 * 10 9 7 29 29 H 1.09004 * 109.47116 * 60.00455 * 11 10 9 30 30 H 1.08998 * 109.47794 * 300.00366 * 11 10 9 31 31 H 0.96998 * 119.99507 * 0.02562 * 12 11 10 32 32 H 1.09001 * 109.46564 * 299.73030 * 15 13 12 33 33 H 1.08998 * 109.47012 * 59.72084 * 15 13 12 34 34 H 1.08000 * 120.00145 * 0.02562 * 17 16 15 35 35 H 1.07996 * 120.00212 * 179.70565 * 20 18 17 36 36 H 1.08000 * 119.99868 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0023 11 6 5.5515 -2.6364 -0.0035 12 7 6.0399 -4.0177 -0.0040 13 6 7.3650 -4.2639 -0.0056 14 8 8.1531 -3.3420 -0.0116 15 6 7.8674 -5.6847 -0.0067 16 6 9.3744 -5.6847 -0.0152 17 6 10.0587 -5.7962 -1.2108 18 6 11.4429 -5.7914 -1.2191 19 9 12.1118 -5.8949 -2.3882 20 6 12.1420 -5.6858 -0.0284 21 6 11.4579 -5.5796 1.1672 22 6 10.0733 -5.5787 1.1749 23 9 9.4043 -5.4748 2.3442 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6804 0.8888 26 1 3.8746 -0.6799 -0.8912 27 1 3.6579 -3.1497 -0.8925 28 1 3.6587 -3.1509 0.8874 29 1 5.9156 -2.1231 0.8865 30 1 5.9142 -2.1221 -0.8934 31 1 5.4096 -4.7549 -0.0039 32 1 7.5091 -6.1974 0.8859 33 1 7.4990 -6.1997 -0.8940 34 1 9.5135 -5.8829 -2.1390 35 1 13.2220 -5.6869 -0.0344 36 1 12.0032 -5.4977 2.0959 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173068569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:30 Heat of formation + Delta-G solvation = -120.626423 kcal Electronic energy + Delta-G solvation = -20847.244113 eV Core-core repulsion = 17159.706877 eV Total energy + Delta-G solvation = -3687.537236 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.23360 -49.18932 -40.02777 -38.77566 -35.59590 -33.47283 -33.22656 -31.49453 -30.51301 -28.56985 -26.76590 -23.54722 -23.09162 -22.13605 -20.80294 -19.94054 -18.01192 -17.57127 -17.54576 -17.16781 -16.74208 -16.02728 -15.66655 -15.57413 -15.53563 -14.75033 -14.60537 -14.32383 -14.20292 -13.75813 -13.56497 -13.33393 -12.98260 -12.71653 -12.35795 -12.16130 -11.97025 -11.84777 -11.41399 -11.11195 -10.91227 -10.27091 -10.01947 -9.83643 -9.71901 -9.41595 -9.24814 -8.92596 -8.83869 -8.57328 -6.08105 -4.06995 0.59272 0.66068 2.62315 2.89712 3.30033 3.36423 3.38126 3.42025 3.78561 3.85851 4.08254 4.25857 4.42893 4.56948 4.74664 4.79750 4.94512 5.08553 5.25997 5.34117 5.52815 5.56478 5.61874 5.62351 5.69319 5.75569 5.98072 6.29829 6.41282 6.42201 6.65079 6.75931 7.20228 7.33705 7.54805 7.74390 8.23818 8.48302 8.95569 9.54143 11.05131 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031784 B = 0.002714 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.735775 B =10314.936658 C =10489.939394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.724 5.724 13 C 0.511 3.489 14 O -0.537 6.537 15 C -0.107 4.107 16 C -0.068 4.068 17 C -0.113 4.113 18 C 0.090 3.910 19 F -0.136 7.136 20 C -0.126 4.126 21 C -0.124 4.124 22 C 0.106 3.894 23 F -0.131 7.131 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.401 0.599 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.033 -16.167 0.085 28.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.009 4.009 12 N -0.375 5.375 13 C 0.296 3.704 14 O -0.414 6.414 15 C -0.146 4.146 16 C -0.069 4.069 17 C -0.132 4.132 18 C 0.070 3.930 19 F -0.114 7.114 20 C -0.145 4.145 21 C -0.143 4.143 22 C 0.086 3.914 23 F -0.109 7.109 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.235 0.765 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 23.429 -15.357 0.085 28.013 hybrid contribution -0.032 0.617 -0.022 0.618 sum 23.397 -14.741 0.063 27.653 Atomic orbital electron populations 1.69906 1.06320 1.26989 1.50959 1.25028 0.94748 0.99245 0.94442 0.86776 0.80407 0.83523 0.78600 1.20233 1.21347 1.18903 1.21092 0.89291 0.94516 1.51158 0.90998 1.19505 0.97289 0.91463 0.96667 1.21704 0.90548 1.01088 1.01767 1.21672 0.96184 0.81031 1.01987 1.46133 1.06457 1.10174 1.74761 1.20305 0.82769 0.90591 0.76760 1.90732 1.55296 1.46128 1.49223 1.20657 0.91367 0.96303 1.06310 1.19145 0.95157 1.01018 0.91589 1.20868 0.92387 1.01345 0.98613 1.17580 0.90029 1.03742 0.81621 1.91520 1.80442 1.93566 1.45908 1.20978 1.01165 1.01916 0.90450 1.20958 0.92070 1.01829 0.99423 1.17483 0.90116 1.02562 0.81240 1.91526 1.80557 1.93291 1.45552 0.92672 0.96304 0.96760 0.92086 0.92039 0.91753 0.91739 0.76519 0.87138 0.86981 0.83702 0.83723 0.83586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.06 5.27 -26.74 -0.14 -2.20 16 11 C 0.11 1.84 5.67 -4.04 -0.02 1.82 16 12 N -0.72 -9.30 5.56 -60.29 -0.33 -9.63 16 13 C 0.51 6.82 7.82 -10.98 -0.09 6.73 16 14 O -0.54 -9.49 16.03 5.56 0.09 -9.40 16 15 C -0.11 -0.95 5.60 -29.03 -0.16 -1.12 16 16 C -0.07 -0.69 4.38 -104.57 -0.46 -1.14 16 17 C -0.11 -1.06 9.66 -39.52 -0.38 -1.44 16 18 C 0.09 0.84 7.30 -39.42 -0.29 0.56 16 19 F -0.14 -1.35 17.27 2.25 0.04 -1.31 16 20 C -0.13 -1.01 10.02 -39.52 -0.40 -1.41 16 21 C -0.12 -1.05 10.02 -39.52 -0.40 -1.45 16 22 C 0.11 1.11 7.24 -39.43 -0.29 0.83 16 23 F -0.13 -1.53 16.57 2.25 0.04 -1.49 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 26 H 0.01 0.33 7.57 -51.92 -0.39 -0.07 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 32 H 0.11 0.81 7.79 -51.93 -0.40 0.41 16 33 H 0.11 0.67 8.05 -51.93 -0.42 0.25 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 321.89 15.07 4.85 4.85 Total: -1.00 -33.80 321.89 -6.86 -40.66 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.48 Total: -1.48 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -3.16 Total: -12.33 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.44 Total: -36.52 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.08 Total: -2.80 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.80 -6.86 -40.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173068569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.969 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds