Wall clock time and date at job start Tue Mar 31 2020 06:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31519 * 119.99723 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99900 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47312 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.46948 * 119.99892 * 9 7 5 12 12 H 1.48500 * 109.46809 * 239.99811 * 9 7 5 13 13 N 1.46499 * 109.46840 * 294.99527 * 3 2 1 14 14 C 1.34781 * 119.99874 * 85.00543 * 13 3 2 15 15 O 1.21278 * 120.00033 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00101 * 179.97438 * 14 13 3 17 17 F 1.39905 * 109.46943 * 324.99841 * 16 14 13 18 18 F 1.39901 * 109.47070 * 84.99693 * 16 14 13 19 19 C 1.50697 * 109.47295 * 204.99599 * 16 14 13 20 20 C 1.38231 * 119.99936 * 269.73051 * 19 16 14 21 21 C 1.38242 * 119.99628 * 179.76253 * 20 19 16 22 22 C 1.38235 * 120.00217 * 0.50821 * 21 20 19 23 23 C 1.38240 * 119.99702 * 359.74256 * 22 21 20 24 24 C 1.38234 * 120.00200 * 0.02562 * 23 22 21 25 25 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 26 26 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 27 27 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 29 29 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 30 30 H 0.97003 * 119.99231 * 179.97438 * 8 7 5 31 31 H 0.97002 * 120.00410 * 264.99761 * 13 3 2 32 32 H 1.07999 * 120.00433 * 359.97438 * 20 19 16 33 33 H 1.08001 * 119.99814 * 180.22368 * 21 20 19 34 34 H 1.07999 * 120.00318 * 179.71926 * 22 21 20 35 35 H 1.07999 * 119.99913 * 179.97438 * 23 22 21 36 36 H 1.07997 * 120.00270 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 3.4061 0.3376 2.1734 9 14 6.0050 0.8802 1.3812 10 1 6.5988 1.5443 0.1932 11 1 6.3999 1.6160 2.6092 12 1 6.4961 -0.5188 1.4628 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3396 2.6319 -0.4345 16 6 0.0366 3.3385 -2.6546 17 9 1.1558 3.9558 -3.2236 18 9 -0.4715 2.3844 -3.5427 19 6 -1.0200 4.3753 -2.3727 20 6 -2.3574 4.0287 -2.4162 21 6 -3.3265 4.9788 -2.1527 22 6 -2.9584 6.2778 -1.8562 23 6 -1.6210 6.6256 -1.8179 24 6 -0.6518 5.6745 -2.0766 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0608 2.9500 31 1 2.2720 2.1231 -1.9978 32 1 -2.6452 3.0150 -2.6525 33 1 -4.3713 4.7071 -2.1831 34 1 -3.7156 7.0211 -1.6548 35 1 -1.3334 7.6406 -1.5866 36 1 0.3930 5.9463 -2.0470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183806057.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:38 Heat of formation + Delta-G solvation = -110.929762 kcal Electronic energy + Delta-G solvation = -22687.940246 eV Core-core repulsion = 19000.823489 eV Total energy + Delta-G solvation = -3687.116757 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.08593 -47.08977 -39.47161 -38.74659 -35.30335 -32.52328 -32.04984 -31.03242 -30.98028 -27.67517 -26.35366 -23.29065 -22.67849 -22.13553 -20.52395 -19.58500 -18.34259 -17.92237 -17.45230 -16.17393 -16.09268 -15.41117 -14.80431 -14.73945 -14.66693 -14.40685 -13.83824 -13.80756 -13.58816 -13.19844 -13.11177 -12.78207 -12.63672 -12.40543 -12.13027 -11.62732 -11.35952 -11.22035 -11.18763 -11.03189 -10.90666 -10.37676 -10.29087 -9.72667 -9.37286 -9.14428 -8.98884 -8.98040 -8.58560 -8.05894 -6.19038 -4.28946 1.10287 1.33555 2.78003 3.16798 3.21255 3.29656 3.33444 3.59499 3.94003 4.23862 4.36179 4.62111 4.90209 5.01905 5.03357 5.11228 5.14655 5.37139 5.51818 5.74396 5.94206 6.30159 6.31598 6.37059 6.37425 6.39243 6.55550 6.83939 6.94760 7.06326 7.14173 7.27178 7.48376 7.61477 7.77725 8.06664 8.36318 8.57611 8.82477 9.37935 10.86413 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024717 B = 0.004740 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.541306 B = 5905.716417 C = 6132.694697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.903 3.097 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.684 5.684 14 C 0.477 3.523 15 O -0.504 6.504 16 C 0.324 3.676 17 F -0.185 7.185 18 F -0.181 7.181 19 C -0.133 4.133 20 C -0.070 4.070 21 C -0.123 4.123 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.082 4.082 25 H 0.051 0.949 26 H 0.036 0.964 27 H 0.027 0.973 28 H 0.034 0.966 29 H 0.103 0.897 30 H 0.265 0.735 31 H 0.396 0.604 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.291 8.455 -9.185 15.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.331 5.331 14 C 0.255 3.745 15 O -0.380 6.380 16 C 0.284 3.716 17 F -0.166 7.166 18 F -0.162 7.162 19 C -0.134 4.134 20 C -0.088 4.088 21 C -0.141 4.141 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.100 4.100 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.229 0.771 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.777 8.291 -8.328 15.287 hybrid contribution 1.378 -0.130 -0.433 1.450 sum -8.399 8.161 -8.762 14.626 Atomic orbital electron populations 1.21860 0.98298 0.98459 1.01079 1.21960 0.92663 0.99427 1.02713 1.18989 0.94772 0.89373 0.80125 0.92860 1.21236 0.90308 1.39372 1.06559 0.91770 1.24880 0.98827 0.94605 0.95240 1.69901 1.35180 1.37450 1.09332 0.86358 0.84533 0.77851 0.78196 1.19639 1.20812 1.20793 1.46604 1.13615 1.53617 1.19285 1.20256 0.84701 0.81490 0.88022 1.90756 1.50934 1.58401 1.37876 1.20045 0.81849 0.83928 0.85765 1.93031 1.53603 1.83430 1.86552 1.93044 1.87367 1.65441 1.70301 1.19813 0.93850 0.94042 1.05683 1.20896 0.91363 1.00052 0.96496 1.21098 0.99384 0.93211 1.00437 1.21265 0.96243 0.96454 0.98246 1.21085 0.92817 0.99480 1.00732 1.20944 1.00540 0.91744 0.96787 0.93035 0.94510 0.95428 0.94683 0.87881 0.92489 0.77087 0.85226 0.85425 0.85691 0.85403 0.85144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.65 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.12 16 5 C -0.54 -13.96 8.73 -34.44 -0.30 -14.26 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.20 11.30 55.43 0.63 -23.57 16 9 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 10 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -0.68 -14.44 4.95 -54.93 -0.27 -14.72 16 14 C 0.48 9.66 5.79 -10.98 -0.06 9.59 16 15 O -0.50 -11.43 13.37 5.56 0.07 -11.36 16 16 C 0.32 5.53 2.22 -29.04 -0.06 5.46 16 17 F -0.19 -3.00 15.66 2.25 0.04 -2.97 16 18 F -0.18 -3.02 16.18 2.25 0.04 -2.98 16 19 C -0.13 -2.07 4.38 -104.63 -0.46 -2.53 16 20 C -0.07 -0.99 9.37 -39.58 -0.37 -1.36 16 21 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 22 C -0.10 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 24 C -0.08 -1.14 9.40 -39.58 -0.37 -1.52 16 25 H 0.05 1.19 7.85 -51.93 -0.41 0.79 16 26 H 0.04 0.79 5.64 -51.93 -0.29 0.50 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.40 7.56 8.10 -40.82 -0.33 7.23 16 32 H 0.13 1.75 7.60 -52.49 -0.40 1.35 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.71 7.60 -52.49 -0.40 1.31 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -28.82 310.67 -6.93 -35.74 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -4.19 Total: 7.42 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.90 Total: -7.56 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.35 Total: -38.29 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.07 Total: -11.36 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.07 Total: -5.95 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.82 -6.93 -35.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183806057.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.187 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds