Wall clock time and date at job start Tue Mar 31 2020 06:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47382 * 2 1 4 4 H 1.09000 * 109.46694 * 305.69807 * 3 2 1 5 5 C 1.50694 * 109.47375 * 185.69415 * 3 2 1 6 6 H 1.08004 * 120.00067 * 275.00746 * 5 3 2 7 7 C 1.37881 * 120.00158 * 95.00701 * 5 3 2 8 8 N 1.31515 * 120.00136 * 184.83037 * 7 5 3 9 9 Si 1.86793 * 119.99758 * 4.82733 * 7 5 3 10 10 H 1.48503 * 109.47170 * 84.86577 * 9 7 5 11 11 H 1.48504 * 109.47345 * 204.86094 * 9 7 5 12 12 H 1.48499 * 109.47448 * 324.86530 * 9 7 5 13 13 N 1.46497 * 109.46678 * 65.69335 * 3 2 1 14 14 C 1.34780 * 120.00483 * 275.00189 * 13 3 2 15 15 O 1.21289 * 119.99435 * 359.97438 * 14 13 3 16 16 C 1.50696 * 120.00554 * 180.02562 * 14 13 3 17 17 F 1.39901 * 109.47380 * 84.99690 * 16 14 13 18 18 F 1.39903 * 109.46579 * 324.99509 * 16 14 13 19 19 C 1.50704 * 109.47139 * 204.99840 * 16 14 13 20 20 C 1.38230 * 120.00105 * 269.72280 * 19 16 14 21 21 C 1.38228 * 120.00042 * 179.76473 * 20 19 16 22 22 C 1.38230 * 120.00052 * 0.48515 * 21 20 19 23 23 C 1.38237 * 120.00176 * 359.79370 * 22 21 20 24 24 C 1.38234 * 119.99746 * 89.99710 * 19 16 14 25 25 H 1.08998 * 109.47309 * 300.00178 * 1 2 3 26 26 H 1.09007 * 109.46785 * 59.99955 * 1 2 3 27 27 H 1.09001 * 109.46889 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47117 * 240.00371 * 2 1 3 29 29 H 1.08997 * 109.47508 * 120.00255 * 2 1 3 30 30 H 0.96997 * 119.99978 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00157 * 95.00260 * 13 3 2 32 32 H 1.08003 * 119.99709 * 0.02562 * 20 19 16 33 33 H 1.08007 * 120.00076 * 180.25042 * 21 20 19 34 34 H 1.08000 * 120.00420 * 179.76515 * 22 21 20 35 35 H 1.07998 * 120.00351 * 179.97438 * 23 22 21 36 36 H 1.07998 * 120.00743 * 0.02562 * 24 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5958 1.9849 -0.8346 5 6 3.5404 1.4448 -0.1410 6 1 4.1651 1.3333 0.7330 7 6 4.1157 1.5894 -1.3856 8 7 5.4205 1.4965 -1.5218 9 14 3.0418 1.9172 -2.8785 10 1 2.7754 3.3741 -2.9863 11 1 3.7401 1.4498 -4.1029 12 1 1.7562 1.1884 -2.7331 13 7 1.6668 2.0923 1.2588 14 6 0.4509 2.6588 1.3902 15 8 -0.3341 2.6309 0.4661 16 6 0.0671 3.3277 2.6849 17 9 0.5334 4.6467 2.6844 18 9 0.6374 2.6318 3.7562 19 6 -1.4333 3.3254 2.8261 20 6 -2.1754 4.3828 2.3343 21 6 -3.5520 4.3783 2.4594 22 6 -4.1857 3.3212 3.0854 23 6 -3.4431 2.2665 3.5824 24 6 -2.0668 2.2685 3.4525 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.8251 1.5978 -2.3975 31 1 2.2947 2.1150 1.9977 32 1 -1.6800 5.2104 1.8484 33 1 -4.1322 5.2026 2.0716 34 1 -5.2609 3.3195 3.1866 35 1 -3.9381 1.4408 4.0718 36 1 -1.4867 1.4446 3.8411 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183806072.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:42 Heat of formation + Delta-G solvation = -111.101721 kcal Electronic energy + Delta-G solvation = -22826.073619 eV Core-core repulsion = 19138.949405 eV Total energy + Delta-G solvation = -3687.124214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.13033 -47.13456 -39.59047 -38.85793 -35.44962 -32.48696 -32.13011 -31.57765 -31.04975 -28.02565 -26.61986 -23.09460 -22.73790 -22.27367 -20.63244 -19.78805 -18.44889 -17.98060 -17.47846 -16.67458 -16.17431 -15.48728 -14.99106 -14.82444 -14.72563 -14.44890 -13.93214 -13.84639 -13.63305 -13.24669 -13.15221 -12.88521 -12.73006 -12.55547 -12.38158 -12.02534 -11.92731 -11.31971 -11.24895 -11.02698 -10.80499 -10.76801 -10.12637 -9.91552 -9.49149 -9.31062 -9.06938 -9.04978 -8.77934 -8.26271 -6.30555 -4.35400 1.03917 1.27352 2.65140 3.06524 3.23076 3.29447 3.35446 3.53418 3.87594 4.21306 4.25976 4.55607 4.84212 4.91668 4.96211 4.98014 5.14975 5.30986 5.45727 5.68091 5.88102 5.95354 5.99250 6.13163 6.24052 6.31162 6.33369 6.51373 6.67974 6.77634 6.79168 6.87779 7.12379 7.20337 7.37797 7.89402 8.35654 8.51237 8.71815 9.29708 10.80783 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024949 B = 0.005228 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.018003 B = 5354.228662 C = 5519.067453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.235 3.765 4 H 0.054 0.946 5 C -0.534 4.534 6 H 0.081 0.919 7 C 0.084 3.916 8 N -0.884 5.884 9 Si 0.871 3.129 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.259 1.259 13 N -0.678 5.678 14 C 0.475 3.525 15 O -0.509 6.509 16 C 0.325 3.675 17 F -0.178 7.178 18 F -0.185 7.185 19 C -0.133 4.133 20 C -0.070 4.070 21 C -0.123 4.123 22 C -0.104 4.104 23 C -0.123 4.123 24 C -0.082 4.082 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.269 0.731 31 H 0.400 0.600 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.776 2.723 9.519 18.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.165 4.165 3 C 0.133 3.867 4 H 0.072 0.928 5 C -0.572 4.572 6 H 0.099 0.901 7 C -0.121 4.121 8 N -0.519 5.519 9 Si 0.698 3.302 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.183 1.183 13 N -0.327 5.327 14 C 0.254 3.746 15 O -0.385 6.385 16 C 0.285 3.715 17 F -0.159 7.159 18 F -0.166 7.166 19 C -0.135 4.135 20 C -0.088 4.088 21 C -0.141 4.141 22 C -0.122 4.122 23 C -0.141 4.141 24 C -0.100 4.100 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.235 0.765 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.090 2.696 8.707 18.493 hybrid contribution 0.103 0.297 -0.333 0.458 sum -15.987 2.993 8.374 18.294 Atomic orbital electron populations 1.21921 0.97380 0.99192 1.01894 1.22086 0.93660 0.99034 1.01682 1.19351 0.96015 0.89330 0.81961 0.92783 1.20971 0.88313 1.52186 0.95708 0.90066 1.24925 0.94900 0.93490 0.98774 1.69871 1.09744 1.47654 1.24642 0.86930 0.81288 0.79754 0.82268 1.19730 1.20989 1.18287 1.46787 1.13226 1.53725 1.18912 1.20415 0.84464 0.81587 0.88090 1.90745 1.50390 1.58518 1.38889 1.19986 0.89872 0.76257 0.85343 1.93061 1.90001 1.36100 1.96751 1.93033 1.86313 1.78872 1.58334 1.19819 0.91855 0.98132 1.03648 1.20911 0.94214 0.97209 0.96446 1.21103 0.93996 0.99091 0.99881 1.21269 1.00009 0.93839 0.97058 1.21082 0.93356 0.98936 1.00749 1.20924 0.95184 0.97066 0.96876 0.93416 0.93010 0.94719 0.91640 0.92668 0.92065 0.76521 0.85167 0.85401 0.85679 0.85409 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.53 37.16 0.32 -2.52 16 2 C -0.13 -2.65 5.59 -26.73 -0.15 -2.80 16 3 C 0.23 5.45 1.89 -69.08 -0.13 5.32 16 4 H 0.05 1.36 4.73 -51.93 -0.25 1.11 16 5 C -0.53 -14.10 9.05 -34.44 -0.31 -14.41 16 6 H 0.08 2.27 8.06 -52.48 -0.42 1.84 16 7 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 8 N -0.88 -25.60 13.96 55.43 0.77 -24.83 16 9 Si 0.87 21.09 26.99 -169.99 -4.59 16.50 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.26 -6.11 6.82 56.52 0.39 -5.73 16 13 N -0.68 -13.83 4.96 -54.93 -0.27 -14.10 16 14 C 0.48 9.26 5.82 -10.99 -0.06 9.19 16 15 O -0.51 -10.97 13.38 5.55 0.07 -10.89 16 16 C 0.33 5.40 2.22 -29.03 -0.06 5.33 16 17 F -0.18 -2.99 16.19 2.25 0.04 -2.96 16 18 F -0.18 -2.88 15.66 2.25 0.04 -2.84 16 19 C -0.13 -1.99 4.38 -104.62 -0.46 -2.45 16 20 C -0.07 -0.95 9.37 -39.59 -0.37 -1.32 16 21 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 22 C -0.10 -1.05 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 24 C -0.08 -1.08 9.40 -39.58 -0.37 -1.45 16 25 H 0.05 0.92 5.63 -51.93 -0.29 0.62 16 26 H 0.05 1.06 7.89 -51.93 -0.41 0.65 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 1.42 8.14 -51.92 -0.42 0.99 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.40 7.51 8.15 -40.82 -0.33 7.17 16 32 H 0.13 1.72 7.60 -52.48 -0.40 1.32 16 33 H 0.13 1.08 8.06 -52.48 -0.42 0.65 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.13 1.57 7.60 -52.49 -0.40 1.17 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -29.74 310.59 -6.34 -36.08 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -4.19 Total: 6.16 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -2.90 Total: -7.81 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.50 Total: -38.93 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.07 Total: -10.89 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.07 Total: -5.80 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.59 Total: 16.50 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.74 -6.34 -36.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183806072.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.019 kcal (2) G-P(sol) polarization free energy of solvation -29.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds