Wall clock time and date at job start Tue Mar 31 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21548 * 120.00126 * 359.97438 * 14 13 3 16 16 C 1.47854 * 119.99892 * 179.97438 * 14 13 3 17 17 C 1.39595 * 120.14151 * 359.72033 * 16 14 13 18 18 C 1.37941 * 119.84841 * 179.74528 * 17 16 14 19 19 C 1.38381 * 120.14321 * 0.53231 * 18 17 16 20 20 C 1.38336 * 120.29221 * 359.74701 * 19 18 17 21 21 C 1.50709 * 119.92377 * 179.97438 * 20 19 18 22 22 F 1.39901 * 109.46827 * 119.97669 * 21 20 19 23 23 F 1.39901 * 109.46840 * 239.97634 * 21 20 19 24 24 C 1.37971 * 120.14738 * 359.97157 * 20 19 18 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 30 30 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 32 32 H 1.07996 * 120.07386 * 0.02562 * 17 16 14 33 33 H 1.07998 * 119.92873 * 180.28048 * 18 17 16 34 34 H 1.07997 * 119.85460 * 179.76128 * 19 18 17 35 35 H 1.08994 * 109.46888 * 359.97438 * 21 20 19 36 36 H 1.08006 * 120.07384 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3409 2.6326 0.4321 16 6 0.0439 3.3249 2.6306 17 6 0.9307 3.3579 3.7081 18 6 0.5614 3.9804 4.8824 19 6 -0.6892 4.5616 4.9973 20 6 -1.5749 4.5272 3.9351 21 6 -2.9350 5.1623 4.0695 22 9 -3.0767 6.1688 3.1082 23 9 -3.9239 4.1915 3.8776 24 6 -1.2158 3.9129 2.7531 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.8292 -0.0604 -2.9503 31 1 2.2720 2.1231 1.9978 32 1 1.9054 2.9011 3.6210 33 1 1.2481 4.0107 5.7153 34 1 -0.9750 5.0443 5.9201 35 1 -3.0377 5.5937 5.0652 36 1 -1.9080 3.8871 1.9244 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183816034.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:10 Heat of formation + Delta-G solvation = -121.967099 kcal Electronic energy + Delta-G solvation = -21871.708289 eV Core-core repulsion = 18184.112917 eV Total energy + Delta-G solvation = -3687.595372 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.10571 -47.09428 -39.94275 -38.21577 -35.11051 -32.90684 -32.01244 -31.32348 -30.55849 -27.14059 -26.16354 -24.10306 -22.80106 -21.97061 -20.42188 -19.40565 -18.24068 -17.47522 -17.32508 -16.59360 -16.26500 -15.73437 -15.35464 -14.74082 -14.56201 -14.28788 -14.02809 -13.95111 -13.46574 -13.34558 -12.98191 -12.81455 -12.69936 -12.18889 -11.97530 -11.59737 -11.48445 -11.26651 -11.07609 -11.00778 -10.84792 -10.34685 -10.20990 -9.66644 -9.25545 -9.18311 -9.07423 -9.05013 -8.53389 -7.88345 -6.15087 -4.25007 0.76144 1.08380 3.07389 3.22352 3.29544 3.31317 3.51479 3.92141 3.95223 4.01914 4.31676 4.42330 4.74068 4.79376 4.88116 5.06592 5.16115 5.18837 5.36531 5.59323 5.77085 6.11170 6.16243 6.25113 6.38104 6.44635 6.62858 6.64901 7.02387 7.17842 7.32641 7.39006 7.58605 7.69204 7.86430 8.14593 8.58485 8.73021 9.03778 9.42205 10.90270 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.027587 B = 0.003914 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.737436 B = 7151.673496 C = 7640.913759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.540 6.540 16 C -0.121 4.121 17 C -0.068 4.068 18 C -0.130 4.130 19 C -0.073 4.073 20 C -0.184 4.184 21 C 0.316 3.684 22 F -0.199 7.199 23 F -0.199 7.199 24 C -0.026 4.026 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.023 0.977 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.063 7.507 16.060 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.347 5.347 14 C 0.325 3.675 15 O -0.420 6.420 16 C -0.124 4.124 17 C -0.087 4.087 18 C -0.148 4.148 19 C -0.091 4.091 20 C -0.185 4.185 21 C 0.262 3.738 22 F -0.180 7.180 23 F -0.180 7.180 24 C -0.045 4.045 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.149 0.851 35 H 0.135 0.865 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.599 7.361 15.124 18.457 hybrid contribution 1.260 -0.067 0.183 1.275 sum -6.339 7.293 15.307 18.102 Atomic orbital electron populations 1.21850 0.98308 0.98155 1.01262 1.21939 0.92651 0.99662 1.02370 1.18851 0.94339 0.89254 0.80750 0.93087 1.21207 0.90570 1.39248 1.06410 0.92082 1.24884 0.98646 0.94748 0.95326 1.69895 1.35168 1.37452 1.09309 0.86448 0.84791 0.78431 0.77435 1.20530 1.21040 1.19860 1.46466 1.14197 1.55358 1.18681 1.18085 0.83186 0.79547 0.86692 1.90758 1.51466 1.59930 1.39795 1.20388 0.95101 1.01299 0.95602 1.21595 0.99121 0.95763 0.92236 1.21068 0.96452 0.99097 0.98138 1.21032 0.93370 0.97407 0.97321 1.20289 0.96318 1.05248 0.96607 1.20357 0.83718 0.78023 0.91665 1.93030 1.96249 1.61124 1.67611 1.93028 1.63989 1.64589 1.96424 1.21102 0.95407 0.91591 0.96437 0.93073 0.94338 0.95746 0.94986 0.88165 0.92500 0.77930 0.84741 0.84801 0.85138 0.86499 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.08 5.45 -26.74 -0.15 -3.23 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.43 11.30 55.43 0.63 -23.80 16 9 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 13 N -0.70 -14.33 4.97 -55.88 -0.28 -14.61 16 14 C 0.54 10.88 6.34 -12.33 -0.08 10.80 16 15 O -0.54 -12.76 13.48 5.32 0.07 -12.69 16 16 C -0.12 -1.91 5.87 -104.97 -0.62 -2.53 16 17 C -0.07 -0.84 9.54 -39.18 -0.37 -1.22 16 18 C -0.13 -1.24 10.03 -39.64 -0.40 -1.64 16 19 C -0.07 -0.66 9.66 -39.49 -0.38 -1.04 16 20 C -0.18 -2.13 5.37 -104.68 -0.56 -2.69 16 21 C 0.32 3.17 5.45 36.01 0.20 3.37 16 22 F -0.20 -2.44 17.25 2.25 0.04 -2.40 16 23 F -0.20 -2.43 17.25 2.25 0.04 -2.39 16 24 C -0.03 -0.39 9.14 -39.19 -0.36 -0.75 16 25 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 26 H 0.04 0.85 5.65 -51.93 -0.29 0.55 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.37 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.65 16 31 H 0.39 6.76 6.57 -40.82 -0.27 6.50 16 32 H 0.13 1.46 6.41 -52.49 -0.34 1.12 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.13 0.70 7.94 -52.49 -0.42 0.29 16 35 H 0.12 0.66 7.87 -51.93 -0.41 0.25 16 36 H 0.14 2.29 7.65 -52.48 -0.40 1.89 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -30.87 310.59 -6.84 -37.70 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.04 Total: 5.92 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.95 Total: -7.69 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 0.35 Total: -38.41 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.07 Total: -12.69 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 0.08 Total: -4.80 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.87 -6.84 -37.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183816034.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.264 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds