Wall clock time and date at job start Tue Mar 31 2020 05:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48502 * 109.47074 * 240.00219 * 3 2 1 5 5 H 1.48501 * 109.47134 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47257 * 119.99903 * 3 2 1 7 7 C 1.38805 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00299 * 164.23710 * 7 2 1 9 9 N 1.36936 * 120.00390 * 344.22830 * 7 2 1 10 10 C 1.46927 * 120.62998 * 330.00725 * 9 7 2 11 11 C 1.53193 * 108.77397 * 233.62334 * 10 9 7 12 12 C 1.53044 * 109.31196 * 305.36593 * 11 10 9 13 13 O 1.42898 * 109.45830 * 181.38525 * 12 11 10 14 14 C 1.36005 * 117.00202 * 150.06692 * 13 12 11 15 15 C 1.38638 * 120.03389 * 5.69666 * 14 13 12 16 16 C 1.38183 * 119.99253 * 180.27240 * 15 14 13 17 17 C 1.38461 * 120.06834 * 359.43081 * 16 15 14 18 18 F 1.35098 * 119.96028 * 180.29593 * 17 16 15 19 19 C 1.38445 * 120.07441 * 0.27015 * 17 16 15 20 20 C 1.38332 * 120.00240 * 0.02597 * 19 17 16 21 21 F 1.35106 * 120.02804 * 179.97438 * 20 19 17 22 22 C 1.53041 * 109.52833 * 61.37136 * 12 11 10 23 23 C 1.46930 * 120.63022 * 150.01891 * 9 7 2 24 24 H 0.96999 * 119.99561 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.58765 * 113.83699 * 10 9 7 26 26 H 1.08999 * 109.70378 * 353.47889 * 10 9 7 27 27 H 1.08996 * 109.50119 * 185.41221 * 11 10 9 28 28 H 1.09000 * 109.52440 * 65.33235 * 11 10 9 29 29 H 1.08997 * 109.45745 * 301.35258 * 12 11 10 30 30 H 1.08004 * 120.00369 * 359.97438 * 15 14 13 31 31 H 1.07999 * 119.96645 * 179.70208 * 16 15 14 32 32 H 1.08001 * 119.99618 * 180.02562 * 19 17 16 33 33 H 1.09002 * 109.49434 * 58.57870 * 22 12 11 34 34 H 1.08997 * 109.49456 * 178.67659 * 22 12 11 35 35 H 1.09000 * 109.58555 * 246.16248 * 23 9 7 36 36 H 1.08994 * 109.58884 * 6.44927 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0598 -1.2199 -0.2535 9 7 1.3642 -2.3656 0.3234 10 6 0.2294 -2.3576 1.2566 11 6 0.5045 -3.3666 2.3760 12 6 0.8031 -4.7359 1.7610 13 8 1.0285 -5.6870 2.8034 14 6 0.6945 -6.9794 2.5430 15 6 0.2730 -7.3449 1.2738 16 6 -0.0714 -8.6571 1.0116 17 6 0.0151 -9.6103 2.0121 18 9 -0.3165 -10.8938 1.7517 19 6 0.4416 -9.2497 3.2789 20 6 0.7814 -7.9357 3.5464 21 9 1.1971 -7.5830 4.7825 22 6 2.0507 -4.6399 0.8799 23 6 1.7929 -3.6456 -0.2567 24 1 -0.4849 0.8401 -0.0004 25 1 -0.6811 -2.6384 0.7272 26 1 0.1115 -1.3616 1.6833 27 1 -0.3702 -3.4408 3.0220 28 1 1.3623 -3.0360 2.9617 29 1 -0.0454 -5.0548 1.1558 30 1 0.2093 -6.6031 0.4914 31 1 -0.4043 -8.9405 0.0240 32 1 0.5091 -9.9943 4.0583 33 1 2.8939 -4.2970 1.4794 34 1 2.2764 -5.6205 0.4609 35 1 1.0099 -4.0315 -0.9095 36 1 2.7077 -3.4986 -0.8307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193877906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:13 Heat of formation + Delta-G solvation = -82.755378 kcal Electronic energy + Delta-G solvation = -22072.014809 eV Core-core repulsion = 18386.119785 eV Total energy + Delta-G solvation = -3685.895024 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.06975 -48.91859 -40.24280 -37.91924 -36.36808 -32.81661 -31.10872 -30.62791 -29.82729 -29.13122 -25.36733 -23.64527 -22.89797 -22.24325 -21.65211 -19.46051 -18.54566 -17.76486 -17.45083 -16.80585 -16.18705 -15.83290 -15.44088 -15.11956 -14.95158 -14.54822 -14.52430 -14.39084 -13.64374 -13.59518 -13.19248 -12.88085 -12.55600 -12.36157 -12.32052 -11.79245 -11.55335 -11.40487 -11.12204 -10.78768 -10.69390 -10.46818 -10.27496 -10.05111 -9.76568 -9.68631 -9.27345 -8.56399 -8.15560 -6.78439 -5.88817 -3.33835 0.76413 0.90490 3.10339 3.21078 3.34477 3.40224 3.41599 3.78577 4.21288 4.42222 4.42628 4.63917 4.82529 5.09921 5.17471 5.27013 5.31700 5.40880 5.49537 5.60450 5.72731 5.84266 5.86518 5.89041 6.11158 6.24792 6.27473 6.41639 6.50154 6.54318 6.62686 6.80667 7.19571 7.36121 7.51551 7.71915 8.35950 9.10903 9.72879 10.29612 11.20434 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.037625 B = 0.003621 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.010319 B = 7730.092530 C = 8064.670543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.007 3.993 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.176 3.824 11 C -0.136 4.136 12 C 0.089 3.911 13 O -0.302 6.302 14 C 0.107 3.893 15 C -0.158 4.158 16 C -0.118 4.118 17 C 0.078 3.922 18 F -0.137 7.137 19 C -0.153 4.153 20 C 0.089 3.911 21 F -0.125 7.125 22 C -0.155 4.155 23 C 0.148 3.852 24 H 0.256 0.744 25 H 0.023 0.977 26 H 0.094 0.906 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.154 0.846 31 H 0.144 0.856 32 H 0.151 0.849 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.020 0.980 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 -16.464 3.805 16.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.389 4.389 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.049 3.951 11 C -0.175 4.175 12 C 0.034 3.966 13 O -0.215 6.215 14 C 0.059 3.941 15 C -0.177 4.177 16 C -0.137 4.137 17 C 0.058 3.942 18 F -0.116 7.116 19 C -0.173 4.173 20 C 0.068 3.932 21 F -0.104 7.104 22 C -0.195 4.195 23 C 0.021 3.979 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.112 0.888 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.172 0.828 31 H 0.162 0.838 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.712 -16.218 3.993 16.718 hybrid contribution 0.355 0.614 0.005 0.710 sum -0.357 -15.604 3.998 16.112 Atomic orbital electron populations 1.69993 1.05318 1.25886 1.53439 1.25107 0.95327 0.98563 1.00247 0.86340 0.78931 0.83073 0.78237 1.20782 1.21548 1.20876 1.19128 0.92219 0.84511 1.43009 0.91650 1.44066 1.36524 1.02232 1.48561 1.20784 0.89051 0.97516 0.87711 1.22464 1.01571 0.92648 1.00856 1.22780 0.98182 0.87962 0.87631 1.86282 1.78864 1.13135 1.43257 1.19134 0.96500 0.85820 0.92681 1.21193 1.03130 0.97163 0.96221 1.21018 1.01019 0.92051 0.99575 1.17113 1.04018 0.79359 0.93679 1.91503 1.90434 1.35125 1.94489 1.20829 1.03660 0.95260 0.97549 1.16575 1.05068 0.91388 0.80134 1.91529 1.87813 1.92381 1.38657 1.22618 0.97761 1.00002 0.99072 1.20873 0.98248 0.86597 0.92149 0.93401 0.95929 0.88787 0.92231 0.91343 0.91116 0.82849 0.83816 0.83111 0.90971 0.92542 0.96242 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.28 11.26 55.49 0.62 -24.66 16 2 C 0.01 0.18 4.93 -17.43 -0.09 0.09 16 3 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.26 -6.87 9.57 -15.06 -0.14 -7.02 16 8 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.13 2.98 -172.32 -0.51 -14.64 16 10 C 0.18 3.96 5.28 -3.71 -0.02 3.94 16 11 C -0.14 -2.54 5.73 -26.61 -0.15 -2.69 16 12 C 0.09 1.48 2.05 -26.69 -0.05 1.42 16 13 O -0.30 -4.94 9.65 -19.76 -0.19 -5.13 16 14 C 0.11 1.50 6.65 -39.20 -0.26 1.24 16 15 C -0.16 -1.89 8.50 -39.45 -0.34 -2.22 16 16 C -0.12 -1.22 10.02 -39.52 -0.40 -1.62 16 17 C 0.08 0.85 7.30 -39.42 -0.29 0.56 16 18 F -0.14 -1.50 17.27 2.25 0.04 -1.46 16 19 C -0.15 -1.69 10.00 -39.47 -0.39 -2.08 16 20 C 0.09 1.18 7.31 -39.31 -0.29 0.89 16 21 F -0.13 -1.81 17.11 2.25 0.04 -1.78 16 22 C -0.16 -2.58 5.47 -26.61 -0.15 -2.73 16 23 C 0.15 2.90 6.52 -3.71 -0.02 2.87 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.09 2.39 6.17 -51.93 -0.32 2.07 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.07 1.09 6.00 -51.93 -0.31 0.78 16 30 H 0.15 1.74 5.64 -52.48 -0.30 1.44 16 31 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.81 7.49 -51.93 -0.39 0.42 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 304.75 15.07 4.59 4.59 Total: -1.00 -28.26 304.75 -7.26 -35.53 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -4.24 Total: -1.18 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -2.59 Total: -7.34 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.11 Total: -39.30 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.19 Total: -5.13 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.26 -7.26 -35.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193877906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.228 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds