Wall clock time and date at job start Tue Mar 31 2020 06:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.46927 * 90.00469 * 9 7 5 11 11 H 1.48504 * 109.47102 * 210.00293 * 9 7 5 12 12 H 1.48497 * 109.47275 * 330.00418 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 3 16 16 C 1.47541 * 119.99728 * 179.72391 * 14 13 3 17 17 C 1.39921 * 120.18873 * 269.99938 * 16 14 13 18 18 F 1.35099 * 120.09895 * 359.97438 * 17 16 14 19 19 C 1.38204 * 119.80635 * 179.97438 * 17 16 14 20 20 C 1.38325 * 120.18937 * 359.97438 * 19 17 16 21 21 C 1.38287 * 120.38529 * 0.02562 * 20 19 17 22 22 C 1.50699 * 119.90190 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.18947 * 359.74286 * 21 20 19 24 24 F 1.35101 * 120.09867 * 180.27316 * 23 21 20 25 25 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 26 26 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 28 28 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 29 29 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 30 30 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 31 31 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 32 32 H 1.08004 * 119.90487 * 180.02562 * 19 17 16 33 33 H 1.08004 * 119.80748 * 179.97438 * 20 19 17 34 34 H 1.09002 * 109.47253 * 90.00455 * 22 21 20 35 35 H 1.09007 * 109.46614 * 209.99961 * 22 21 20 36 36 H 1.08993 * 109.47354 * 329.99557 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4416 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6135 0.8417 0.0278 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3394 2.6371 -0.4299 16 6 0.0491 3.3343 -2.6235 17 6 0.3166 4.6947 -2.8120 18 9 0.9313 5.4052 -1.8411 19 6 -0.0498 5.3095 -3.9942 20 6 -0.6788 4.5838 -4.9898 21 6 -0.9470 3.2389 -4.8119 22 6 -1.6323 2.4586 -5.9039 23 6 -0.5831 2.6070 -3.6375 24 9 -0.8410 1.2917 -3.4678 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 3.8293 -0.0619 2.9495 31 1 2.2719 2.1232 -1.9977 32 1 0.1563 6.3594 -4.1416 33 1 -0.9629 5.0706 -5.9111 34 1 -0.8830 2.0345 -6.5724 35 1 -2.2211 1.6550 -5.4615 36 1 -2.2884 3.1219 -6.4675 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214718857.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:38 Heat of formation + Delta-G solvation = -112.888988 kcal Electronic energy + Delta-G solvation = -22589.773089 eV Core-core repulsion = 18902.571374 eV Total energy + Delta-G solvation = -3687.201716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.01939 -48.95933 -39.55946 -38.36108 -35.08621 -32.89917 -32.32362 -31.36789 -30.44960 -27.07592 -26.84712 -24.29850 -22.89222 -22.13365 -20.44206 -19.41174 -18.25965 -17.61582 -17.40873 -16.20827 -15.90281 -15.58557 -15.35348 -15.28728 -14.81833 -14.46510 -14.28603 -14.17452 -13.56862 -13.28343 -13.15727 -12.69342 -12.36180 -12.17350 -11.88349 -11.76067 -11.67418 -11.44629 -11.24702 -10.97750 -10.83906 -10.32920 -10.20181 -9.63311 -9.29956 -9.11074 -8.98828 -8.70956 -8.50157 -7.89661 -6.12057 -4.21604 0.71241 0.81495 3.10272 3.11293 3.25544 3.32009 3.34006 3.68378 3.90949 4.26599 4.34941 4.43197 4.62725 4.79063 5.04585 5.19330 5.33031 5.35985 5.53427 5.66080 5.68798 5.79656 5.91461 6.00005 6.41279 6.48539 6.57051 6.67572 7.06438 7.18880 7.32946 7.39978 7.60647 7.70661 7.88460 8.16620 8.56645 8.73527 9.00376 9.44977 10.93407 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.021958 B = 0.005117 C = 0.004660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.833226 B = 5470.771851 C = 6006.818433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.051 0.949 5 C -0.534 4.534 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.691 5.691 14 C 0.549 3.451 15 O -0.529 6.529 16 C -0.183 4.183 17 C 0.155 3.845 18 F -0.120 7.120 19 C -0.164 4.164 20 C -0.057 4.057 21 C -0.135 4.135 22 C -0.111 4.111 23 C 0.158 3.842 24 F -0.118 7.118 25 H 0.039 0.961 26 H 0.024 0.976 27 H 0.049 0.951 28 H 0.032 0.968 29 H 0.101 0.899 30 H 0.265 0.735 31 H 0.390 0.610 32 H 0.146 0.854 33 H 0.144 0.856 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 6.650 -16.450 19.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.337 5.337 14 C 0.332 3.668 15 O -0.406 6.406 16 C -0.188 4.188 17 C 0.134 3.866 18 F -0.098 7.098 19 C -0.183 4.183 20 C -0.075 4.075 21 C -0.137 4.137 22 C -0.168 4.168 23 C 0.137 3.863 24 F -0.096 7.096 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.068 0.932 28 H 0.051 0.949 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.709 6.462 -15.497 18.475 hybrid contribution 1.372 -0.081 0.039 1.375 sum -6.336 6.381 -15.458 17.883 Atomic orbital electron populations 1.21859 0.98322 0.98247 1.01256 1.21930 0.92654 0.99541 1.02427 1.18900 0.94473 0.89309 0.80535 0.93080 1.21202 0.90471 1.39163 1.06423 0.92031 1.24877 0.98678 0.94720 0.95317 1.69895 1.35170 1.37505 1.09329 0.86434 0.84737 0.77657 0.78199 1.20530 1.21041 1.19846 1.46523 1.13899 1.54515 1.18811 1.17647 0.83628 0.79672 0.85888 1.90801 1.51379 1.59575 1.38884 1.20375 1.06389 0.94257 0.97759 1.17349 0.94828 0.87800 0.86574 1.91592 1.79635 1.77282 1.61268 1.21114 1.02857 1.01698 0.92583 1.20802 0.95915 0.92134 0.98663 1.19906 1.03182 0.95335 0.95235 1.20720 1.00158 0.99897 0.96023 1.17158 0.97749 0.78372 0.92973 1.91562 1.91304 1.31221 1.95543 0.94219 0.95657 0.93174 0.94895 0.88093 0.92518 0.77753 0.83593 0.83784 0.90512 0.90905 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 8.52 37.16 0.32 -2.94 16 2 C -0.13 -3.17 5.45 -26.73 -0.15 -3.32 16 3 C 0.27 6.97 2.24 -69.08 -0.15 6.82 16 4 H 0.05 1.52 7.57 -51.93 -0.39 1.13 16 5 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.89 11.29 55.43 0.63 -24.27 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 N -0.69 -15.27 5.01 -55.97 -0.28 -15.55 16 14 C 0.55 11.89 5.12 -12.47 -0.06 11.83 16 15 O -0.53 -13.29 14.25 5.29 0.08 -13.22 16 16 C -0.18 -3.13 5.64 -104.86 -0.59 -3.72 16 17 C 0.15 2.31 7.29 -38.96 -0.28 2.03 16 18 F -0.12 -2.02 16.83 2.25 0.04 -1.99 16 19 C -0.16 -1.72 10.01 -39.56 -0.40 -2.12 16 20 C -0.06 -0.51 9.68 -39.53 -0.38 -0.89 16 21 C -0.14 -1.47 5.88 -104.60 -0.62 -2.09 16 22 C -0.11 -0.89 9.82 36.01 0.35 -0.53 16 23 C 0.16 2.35 7.23 -38.96 -0.28 2.07 16 24 F -0.12 -1.94 16.04 2.25 0.04 -1.90 16 25 H 0.04 0.91 5.66 -51.93 -0.29 0.62 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 1.24 7.85 -51.93 -0.41 0.83 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 30 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.39 7.67 8.52 -40.82 -0.35 7.32 16 32 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 33 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.63 7.64 -51.92 -0.40 0.24 16 36 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 LS Contribution 313.05 15.07 4.72 4.72 Total: -1.00 -31.34 313.05 -6.67 -38.01 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.22 Total: 4.20 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -2.64 Total: -5.77 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.35 Total: -39.81 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 9 Polarization: -3.96 SS G_CDS: 0.07 Total: -3.89 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.34 -6.67 -38.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214718857.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.882 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds