Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38324 * 119.90508 * 2 1 4 4 C 1.38285 * 120.38489 * 179.97438 * 3 2 1 5 5 C 1.38245 * 120.18781 * 0.25803 * 4 3 2 6 6 F 1.35097 * 120.09476 * 179.71986 * 5 4 3 7 7 C 1.39885 * 119.80521 * 359.50954 * 5 4 3 8 8 C 1.47537 * 120.18905 * 180.23430 * 7 5 4 9 9 O 1.21591 * 119.99906 * 270.25410 * 8 7 5 10 10 N 1.34781 * 120.00165 * 90.25098 * 8 7 5 11 11 C 1.46501 * 119.99685 * 0.02562 * 10 8 7 12 12 C 1.46498 * 120.00193 * 180.02562 * 10 8 7 13 13 H 1.09003 * 109.46998 * 359.97438 * 12 10 8 14 14 C 1.52995 * 109.47310 * 119.99836 * 12 10 8 15 15 C 1.50698 * 109.46722 * 240.00272 * 12 10 8 16 16 H 1.07994 * 120.00424 * 359.97438 * 15 12 10 17 17 C 1.37879 * 120.00105 * 180.02562 * 15 12 10 18 18 N 1.31517 * 119.99589 * 359.97438 * 17 15 12 19 19 Si 1.86798 * 120.00522 * 179.97438 * 17 15 12 20 20 H 1.48502 * 109.46990 * 59.99710 * 19 17 15 21 21 H 1.48500 * 109.47280 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47032 * 299.99923 * 19 17 15 23 23 C 1.38201 * 119.90397 * 180.02562 * 2 1 3 24 24 F 1.35103 * 120.09630 * 359.97438 * 23 2 1 25 25 H 1.08997 * 109.46811 * 89.99918 * 1 2 3 26 26 H 1.08994 * 109.47249 * 210.00097 * 1 2 3 27 27 H 1.09003 * 109.46962 * 330.00665 * 1 2 3 28 28 H 1.08002 * 119.80553 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.90301 * 179.97438 * 4 3 2 30 30 H 1.09002 * 109.46891 * 89.99629 * 11 10 8 31 31 H 1.09003 * 109.46914 * 209.99705 * 11 10 8 32 32 H 1.09003 * 109.46871 * 329.99676 * 11 10 8 33 33 H 1.08997 * 109.47013 * 179.97438 * 14 12 10 34 34 H 1.08995 * 109.47203 * 299.99784 * 14 12 10 35 35 H 1.09003 * 109.46992 * 60.00116 * 14 12 10 36 36 H 0.97002 * 119.99821 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1991 0.0000 4 6 3.5795 1.2106 0.0005 5 6 4.2846 0.0215 -0.0043 6 9 5.6355 0.0351 -0.0095 7 6 3.5952 -1.1956 0.0006 8 6 4.3393 -2.4697 0.0007 9 8 4.6463 -2.9945 -1.0522 10 7 4.6788 -3.0517 1.1680 11 6 4.3084 -2.4196 2.4367 12 6 5.4180 -4.3165 1.1681 13 1 5.6015 -4.6302 0.1404 14 6 6.7535 -4.1266 1.8900 15 6 4.6088 -5.3712 1.8778 16 1 3.6409 -5.1241 2.2881 17 6 5.1045 -6.6516 2.0043 18 7 6.2835 -6.9524 1.5051 19 14 4.1018 -7.9588 2.8846 20 1 2.8056 -8.1436 2.1840 21 1 4.8511 -9.2409 2.8846 22 1 3.8513 -7.5313 4.2845 23 6 2.1960 -1.1980 -0.0005 24 9 1.5205 -2.3680 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5137 28 1 1.6519 2.1317 0.0004 29 1 4.1100 2.1514 0.0001 30 1 3.3293 -2.7814 2.7507 31 1 5.0489 -2.6691 3.1967 32 1 4.2716 -1.3380 2.3065 33 1 7.3033 -5.0677 1.8905 34 1 7.3388 -3.3638 1.3767 35 1 6.5696 -3.8131 2.9177 36 1 6.6321 -7.8533 1.5937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214734265.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = -98.670823 kcal Electronic energy + Delta-G solvation = -22797.379691 eV Core-core repulsion = 19110.794521 eV Total energy + Delta-G solvation = -3686.585170 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.98595 -48.94425 -39.62407 -38.31806 -35.37798 -33.11362 -32.52351 -31.12853 -29.19712 -26.87828 -26.22920 -25.22167 -24.22159 -22.21019 -21.03311 -18.79058 -18.09564 -17.46179 -16.87516 -16.37827 -15.96184 -15.61215 -15.46736 -15.28709 -14.78640 -14.43884 -14.29302 -14.10741 -13.53400 -13.14099 -13.11246 -12.63517 -12.51419 -12.21709 -11.85191 -11.81171 -11.73314 -11.56439 -11.49993 -11.06088 -10.81565 -10.72939 -10.27681 -10.16364 -9.31893 -9.20762 -8.95101 -8.69064 -8.42286 -7.66652 -6.06364 -4.14442 0.73197 0.83281 3.07176 3.12603 3.29568 3.34303 3.36797 3.67329 3.85325 4.28479 4.39407 4.43514 4.61840 4.75720 4.87584 5.23669 5.26605 5.38504 5.50807 5.66107 5.68820 5.71378 5.79198 5.93177 6.01641 6.04030 6.26797 6.58172 6.76002 6.81955 7.03672 7.36260 7.47100 7.70473 7.99827 8.16733 8.43252 8.75834 8.93875 9.51503 10.99125 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.005580 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.261320 B = 5017.123323 C = 5786.410127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.134 4.134 3 C -0.058 4.058 4 C -0.163 4.163 5 C 0.150 3.850 6 F -0.122 7.122 7 C -0.175 4.175 8 C 0.550 3.450 9 O -0.533 6.533 10 N -0.576 5.576 11 C 0.087 3.913 12 C 0.257 3.743 13 H 0.065 0.935 14 C -0.147 4.147 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.888 5.888 19 Si 0.900 3.100 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.158 3.842 24 F -0.116 7.116 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.013 0.987 35 H 0.031 0.969 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.690 17.656 0.592 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.135 4.135 3 C -0.076 4.076 4 C -0.182 4.182 5 C 0.130 3.870 6 F -0.100 7.100 7 C -0.180 4.180 8 C 0.334 3.666 9 O -0.411 6.411 10 N -0.306 5.306 11 C -0.057 4.057 12 C 0.158 3.842 13 H 0.083 0.917 14 C -0.205 4.205 15 C -0.565 4.565 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.526 5.526 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 C 0.138 3.862 24 F -0.094 7.094 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.114 0.886 34 H 0.032 0.968 35 H 0.050 0.950 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.338 17.115 0.051 19.038 hybrid contribution -0.338 -0.940 0.576 1.153 sum -8.676 16.175 0.626 18.365 Atomic orbital electron populations 1.20723 0.89329 1.03653 1.03105 1.19914 0.97589 0.91306 1.04701 1.20789 0.92843 0.97355 0.96660 1.21088 0.94782 0.96991 1.05328 1.17323 0.77332 0.92372 0.99976 1.91572 1.28011 1.97184 1.93230 1.20290 0.93410 0.95547 1.08730 1.17714 0.80232 0.83435 0.85173 1.90782 1.55198 1.64105 1.31014 1.48232 1.53895 1.24479 1.03986 1.21573 1.01208 0.95542 0.87387 1.19043 0.88350 0.77683 0.99154 0.91738 1.22097 0.98636 1.01862 0.97942 1.21253 1.03755 0.94371 1.37077 0.92234 1.24887 0.95101 0.98244 0.95487 1.69871 1.17237 1.20429 1.45048 0.86525 0.80150 0.80600 0.79943 1.20205 1.21127 1.20209 1.17164 0.87541 0.81745 0.99737 1.91581 1.79303 1.45534 1.93019 0.90555 0.90827 0.90679 0.83776 0.83617 0.93003 0.90289 0.93351 0.88571 0.96789 0.94987 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.83 36.01 0.35 -0.59 16 2 C -0.13 -1.52 5.88 -104.60 -0.62 -2.13 16 3 C -0.06 -0.53 9.68 -39.53 -0.38 -0.91 16 4 C -0.16 -1.72 10.01 -39.56 -0.40 -2.11 16 5 C 0.15 2.27 6.87 -38.96 -0.27 2.00 16 6 F -0.12 -2.03 16.83 2.25 0.04 -1.99 16 7 C -0.17 -3.13 3.92 -104.86 -0.41 -3.54 16 8 C 0.55 12.68 6.40 -12.47 -0.08 12.60 16 9 O -0.53 -14.42 16.43 5.29 0.09 -14.33 16 10 N -0.58 -13.25 2.75 -176.49 -0.49 -13.74 16 11 C 0.09 1.60 9.50 59.85 0.57 2.17 16 12 C 0.26 6.85 2.64 -69.09 -0.18 6.66 16 13 H 0.06 1.98 6.90 -51.93 -0.36 1.62 16 14 C -0.15 -3.62 8.95 37.15 0.33 -3.29 16 15 C -0.53 -14.61 8.37 -34.44 -0.29 -14.90 16 16 H 0.06 1.63 7.64 -52.49 -0.40 1.23 16 17 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 18 N -0.89 -25.48 11.32 55.43 0.63 -24.85 16 19 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.16 2.50 7.23 -38.97 -0.28 2.22 16 24 F -0.12 -2.08 16.03 2.25 0.04 -2.04 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.68 7.63 -51.93 -0.40 0.28 16 27 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 28 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 29 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.42 6.43 -51.93 -0.33 1.09 16 32 H 0.05 0.75 6.56 -51.93 -0.34 0.41 16 33 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 36 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -32.86 313.62 -5.90 -38.76 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.16 Total: -2.81 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.74 Total: -0.11 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.14 Total: -38.59 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.09 Total: -14.33 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.86 -5.90 -38.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214734265.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.911 kcal (2) G-P(sol) polarization free energy of solvation -32.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds