Wall clock time and date at job start Tue Mar 31 2020 05:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38324 * 119.90485 * 2 1 4 4 C 1.38285 * 120.38470 * 179.97438 * 3 2 1 5 5 C 1.38245 * 120.18781 * 0.28204 * 4 3 2 6 6 F 1.35097 * 120.09476 * 179.71986 * 5 4 3 7 7 C 1.39885 * 119.80525 * 359.49066 * 5 4 3 8 8 C 1.47537 * 120.18916 * 180.23415 * 7 5 4 9 9 O 1.21590 * 119.99799 * 270.25349 * 8 7 5 10 10 N 1.34780 * 120.00080 * 90.24801 * 8 7 5 11 11 C 1.46495 * 120.00151 * 0.02562 * 10 8 7 12 12 C 1.46503 * 119.99715 * 180.02562 * 10 8 7 13 13 H 1.09002 * 109.47262 * 0.02562 * 12 10 8 14 14 C 1.52996 * 109.46963 * 240.00166 * 12 10 8 15 15 C 1.50697 * 109.46761 * 120.00479 * 12 10 8 16 16 H 1.07995 * 120.00364 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99984 * 179.97438 * 15 12 10 18 18 N 1.31523 * 119.99755 * 359.97438 * 17 15 12 19 19 Si 1.86799 * 120.00512 * 179.97438 * 17 15 12 20 20 H 1.48500 * 109.47172 * 59.99525 * 19 17 15 21 21 H 1.48500 * 109.47422 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46599 * 299.99903 * 19 17 15 23 23 C 1.38193 * 119.90195 * 180.02562 * 2 1 3 24 24 F 1.35103 * 120.10291 * 359.95797 * 23 2 1 25 25 H 1.08999 * 109.47325 * 89.99800 * 1 2 3 26 26 H 1.09004 * 109.47074 * 209.99914 * 1 2 3 27 27 H 1.09001 * 109.47012 * 329.99770 * 1 2 3 28 28 H 1.08003 * 119.80572 * 0.02562 * 3 2 1 29 29 H 1.08002 * 119.90301 * 179.97438 * 4 3 2 30 30 H 1.09000 * 109.47142 * 89.99541 * 11 10 8 31 31 H 1.09001 * 109.47305 * 209.99941 * 11 10 8 32 32 H 1.09001 * 109.47002 * 329.99854 * 11 10 8 33 33 H 1.09002 * 109.47371 * 300.00226 * 14 12 10 34 34 H 1.09000 * 109.47233 * 60.00696 * 14 12 10 35 35 H 1.09006 * 109.47017 * 180.02562 * 14 12 10 36 36 H 0.96998 * 120.00110 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1991 0.0000 4 6 3.5795 1.2106 0.0005 5 6 4.2846 0.0216 -0.0048 6 9 5.6355 0.0351 -0.0100 7 6 3.5952 -1.1956 0.0000 8 6 4.3393 -2.4697 -0.0004 9 8 4.6459 -2.9942 -1.0536 10 7 4.6791 -3.0520 1.1666 11 6 4.3093 -2.4202 2.4355 12 6 5.4185 -4.3168 1.1661 13 1 5.6024 -4.6297 0.1383 14 6 4.5972 -5.3878 1.8866 15 6 6.7340 -4.1298 1.8769 16 1 6.9937 -3.1653 2.2876 17 6 7.6063 -5.1902 2.0030 18 7 7.2898 -6.3649 1.5033 19 14 9.2374 -4.9584 2.8834 20 1 8.9878 -4.5307 4.2834 21 1 9.9867 -6.2405 2.8830 22 1 10.0345 -3.9195 2.1831 23 6 2.1960 -1.1980 -0.0005 24 9 1.5205 -2.3681 -0.0002 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6519 2.1317 0.0004 29 1 4.1100 2.1514 0.0001 30 1 3.3303 -2.7821 2.7498 31 1 5.0500 -2.6699 3.1952 32 1 4.2723 -1.3386 2.3057 33 1 4.4136 -5.0747 2.9144 34 1 3.6456 -5.5231 1.3725 35 1 5.1474 -6.3288 1.8866 36 1 7.9033 -7.1110 1.5923 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214734311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:52 Heat of formation + Delta-G solvation = -99.429723 kcal Electronic energy + Delta-G solvation = -22785.363690 eV Core-core repulsion = 19098.745612 eV Total energy + Delta-G solvation = -3686.618078 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.00824 -48.92166 -39.62317 -38.31806 -35.37077 -33.11584 -32.52831 -31.12939 -29.20375 -26.88086 -26.19682 -25.22834 -24.22197 -22.22846 -21.02085 -18.81084 -18.09953 -17.45787 -16.87384 -16.37434 -15.98913 -15.58813 -15.46967 -15.26904 -14.79861 -14.43604 -14.29408 -14.09750 -13.56225 -13.14363 -13.11651 -12.54852 -12.48026 -12.22946 -11.88372 -11.80705 -11.75190 -11.56608 -11.51065 -11.05616 -10.84244 -10.72546 -10.27801 -10.16747 -9.32860 -9.20069 -8.96203 -8.68853 -8.42363 -7.66906 -6.06767 -4.15012 0.73433 0.82968 3.07368 3.12426 3.29393 3.34231 3.36651 3.67243 3.85503 4.28457 4.39058 4.43461 4.60754 4.76270 4.87617 5.23498 5.24936 5.35820 5.50605 5.66437 5.69257 5.71364 5.78937 5.92821 6.00346 6.02084 6.33420 6.58114 6.75416 6.83314 7.04710 7.35249 7.48976 7.70129 7.99559 8.16970 8.42920 8.75504 8.93609 9.50887 10.98697 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.025523 B = 0.005289 C = 0.004767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.768444 B = 5292.482456 C = 5872.252166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.135 4.135 3 C -0.058 4.058 4 C -0.163 4.163 5 C 0.153 3.847 6 F -0.118 7.118 7 C -0.175 4.175 8 C 0.550 3.450 9 O -0.533 6.533 10 N -0.576 5.576 11 C 0.084 3.916 12 C 0.257 3.743 13 H 0.065 0.935 14 C -0.146 4.146 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.276 1.276 23 C 0.156 3.844 24 F -0.120 7.120 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.030 0.970 34 H 0.012 0.988 35 H 0.095 0.905 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.674 15.290 0.616 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.076 4.076 4 C -0.182 4.182 5 C 0.133 3.867 6 F -0.097 7.097 7 C -0.180 4.180 8 C 0.334 3.666 9 O -0.411 6.411 10 N -0.306 5.306 11 C -0.060 4.060 12 C 0.158 3.842 13 H 0.082 0.918 14 C -0.204 4.204 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.728 3.272 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.202 1.202 23 C 0.136 3.864 24 F -0.098 7.098 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.114 0.886 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.384 14.712 0.073 19.230 hybrid contribution 1.102 -0.087 0.564 1.241 sum -11.282 14.625 0.637 18.482 Atomic orbital electron populations 1.20716 0.89354 1.03601 1.03072 1.19890 0.97538 0.91306 1.04850 1.20789 0.92841 0.97356 0.96649 1.21112 0.94785 0.97059 1.05203 1.17353 0.77515 0.92345 0.99517 1.91601 1.27812 1.97156 1.93083 1.20294 0.93325 0.95638 1.08720 1.17722 0.80150 0.83494 0.85189 1.90782 1.55213 1.64105 1.31002 1.48235 1.53506 1.24831 1.03982 1.21615 1.00540 0.96105 0.87761 1.19041 0.88852 0.77196 0.99135 0.91769 1.22080 0.97303 1.03089 0.97939 1.21253 1.01492 0.96676 1.37152 0.92179 1.24886 0.98331 0.94996 0.95466 1.69873 1.36620 1.01058 1.44969 0.86524 0.83310 0.77445 0.79936 1.20195 1.21130 1.20186 1.17132 0.87490 0.81638 1.00175 1.91551 1.79385 1.45681 1.93164 0.90583 0.90907 0.90681 0.83775 0.83579 0.93597 0.89521 0.93220 0.95048 0.96872 0.88633 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.83 36.01 0.35 -0.53 16 2 C -0.13 -1.49 5.88 -104.60 -0.62 -2.10 16 3 C -0.06 -0.53 9.68 -39.53 -0.38 -0.91 16 4 C -0.16 -1.77 10.01 -39.56 -0.40 -2.16 16 5 C 0.15 2.39 6.87 -38.96 -0.27 2.12 16 6 F -0.12 -2.11 16.83 2.25 0.04 -2.08 16 7 C -0.17 -3.13 3.92 -104.86 -0.41 -3.54 16 8 C 0.55 12.69 6.40 -12.47 -0.08 12.61 16 9 O -0.53 -14.43 16.43 5.29 0.09 -14.34 16 10 N -0.58 -13.25 2.75 -176.50 -0.49 -13.73 16 11 C 0.08 1.54 9.25 59.84 0.55 2.09 16 12 C 0.26 6.85 2.64 -69.08 -0.18 6.66 16 13 H 0.06 1.97 6.90 -51.93 -0.36 1.61 16 14 C -0.15 -3.60 8.97 37.16 0.33 -3.26 16 15 C -0.53 -14.59 7.99 -34.44 -0.28 -14.86 16 16 H 0.06 1.64 7.33 -52.49 -0.38 1.25 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 18 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 19 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.16 2.38 7.23 -38.97 -0.28 2.10 16 24 F -0.12 -2.00 16.03 2.25 0.04 -1.97 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.62 7.63 -51.93 -0.40 0.23 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 29 H 0.15 1.17 8.06 -52.49 -0.42 0.74 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.64 7.02 -51.93 -0.36 1.27 16 32 H 0.05 0.80 6.56 -51.93 -0.34 0.46 16 33 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.10 2.56 6.07 -51.93 -0.32 2.24 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -32.78 314.30 -5.95 -38.73 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.23 Total: -2.80 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.74 Total: -0.06 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.14 Total: -38.53 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.09 Total: -14.34 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.07 Total: -4.04 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.78 -5.95 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214734311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.696 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds