Wall clock time and date at job start Tue Mar 31 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38324 * 119.90503 * 2 1 4 4 C 1.38285 * 120.38470 * 179.97438 * 3 2 1 5 5 C 1.38245 * 120.18781 * 0.28204 * 4 3 2 6 6 F 1.35097 * 120.09476 * 179.71986 * 5 4 3 7 7 C 1.39885 * 119.80521 * 359.50954 * 5 4 3 8 8 C 1.47537 * 120.18905 * 180.23430 * 7 5 4 9 9 O 1.21590 * 119.99799 * 270.23454 * 8 7 5 10 10 N 1.34780 * 120.00080 * 90.22905 * 8 7 5 11 11 C 1.46498 * 120.00108 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47336 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47449 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47244 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00055 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99990 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00206 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99886 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47547 * 60.00201 * 18 16 14 20 20 H 1.48500 * 109.47003 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47106 * 299.99792 * 18 16 14 22 22 C 1.38201 * 119.90384 * 180.02562 * 2 1 3 23 23 F 1.35102 * 120.09611 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47317 * 89.99770 * 1 2 3 25 25 H 1.08997 * 109.46914 * 210.00383 * 1 2 3 26 26 H 1.09001 * 109.46978 * 329.99721 * 1 2 3 27 27 H 1.08003 * 119.80572 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.90301 * 179.97438 * 4 3 2 29 29 H 0.96999 * 119.99990 * 0.02562 * 10 8 7 30 30 H 1.09003 * 109.46768 * 299.99996 * 11 10 8 31 31 H 1.09001 * 109.47674 * 59.99526 * 11 10 8 32 32 H 1.08993 * 109.47276 * 300.00274 * 12 11 10 33 33 H 1.09006 * 109.47141 * 59.99641 * 12 11 10 34 34 H 1.09003 * 109.47064 * 300.00213 * 13 12 11 35 35 H 1.09001 * 109.46982 * 60.00402 * 13 12 11 36 36 H 0.96996 * 120.00549 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1991 0.0000 4 6 3.5795 1.2106 0.0005 5 6 4.2846 0.0215 -0.0048 6 9 5.6355 0.0351 -0.0100 7 6 3.5952 -1.1956 -0.0004 8 6 4.3393 -2.4697 -0.0008 9 8 4.6459 -2.9942 -1.0540 10 7 4.6791 -3.0520 1.1662 11 6 5.4184 -4.3168 1.1658 12 6 5.6750 -4.7580 2.6081 13 6 6.4465 -6.0792 2.6077 14 6 6.6997 -6.5135 4.0283 15 1 6.3454 -5.9080 4.8494 16 6 7.3837 -7.6840 4.2799 17 7 7.8156 -8.4211 3.2801 18 14 7.6970 -8.2227 6.0409 19 1 6.4001 -8.4078 6.7401 20 1 8.4470 -9.5043 6.0404 21 1 8.4935 -7.1839 6.7420 22 6 2.1960 -1.1980 -0.0005 23 9 1.5205 -2.3680 -0.0016 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6519 2.1317 0.0004 28 1 4.1100 2.1514 0.0001 29 1 4.4342 -2.6337 2.0064 30 1 4.8334 -5.0793 0.6515 31 1 6.3702 -4.1812 0.6521 32 1 6.2596 -3.9957 3.1228 33 1 4.7229 -4.8938 3.1213 34 1 5.8614 -6.8415 2.0931 35 1 7.3985 -5.9439 2.0944 36 1 8.2972 -9.2443 3.4570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000214788408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:33 Heat of formation + Delta-G solvation = -122.309405 kcal Electronic energy + Delta-G solvation = -21263.548920 eV Core-core repulsion = 17575.938705 eV Total energy + Delta-G solvation = -3687.610216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.35295 -49.31461 -39.98896 -38.72983 -35.47433 -33.43277 -33.01922 -31.70447 -30.86321 -27.23048 -26.86767 -24.60349 -22.94942 -22.35248 -20.82086 -20.16067 -18.54511 -17.83597 -17.49907 -16.65198 -16.27335 -15.97617 -15.65343 -15.57012 -15.14957 -15.00356 -14.75609 -14.46059 -13.81837 -13.79230 -13.69223 -13.42296 -12.57183 -12.29965 -12.19989 -12.15161 -12.04387 -11.84804 -11.71254 -10.88676 -10.75584 -10.64642 -10.16638 -9.87902 -9.44583 -9.41743 -9.13816 -9.00759 -8.89285 -8.36876 -6.01500 -4.04837 0.36987 0.51522 2.44851 2.78930 3.14778 3.32460 3.37136 3.39076 3.41947 3.95307 4.14678 4.28608 4.43460 4.46431 4.56864 4.97055 5.15822 5.22716 5.33521 5.34145 5.40066 5.48847 5.65163 5.67289 5.73687 5.74775 6.12961 6.25870 6.36653 6.57371 6.77380 6.97600 7.52537 7.63026 7.75566 7.96821 8.16102 8.37965 9.01487 9.59279 11.09802 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.003093 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.573639 B = 9049.352874 C = 9316.726691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C -0.051 4.051 4 C -0.161 4.161 5 C 0.157 3.843 6 F -0.120 7.120 7 C -0.190 4.190 8 C 0.559 3.441 9 O -0.523 6.523 10 N -0.710 5.710 11 C 0.115 3.885 12 C -0.121 4.121 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.161 3.839 23 F -0.118 7.118 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.401 0.599 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.020 0.980 36 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.342 22.551 -5.952 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.133 4.133 3 C -0.069 4.069 4 C -0.180 4.180 5 C 0.137 3.863 6 F -0.098 7.098 7 C -0.195 4.195 8 C 0.342 3.658 9 O -0.399 6.399 10 N -0.360 5.360 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.140 3.860 23 F -0.096 7.096 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.166 0.834 28 H 0.167 0.833 29 H 0.235 0.765 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.971 21.906 -6.750 26.845 hybrid contribution 0.341 -0.416 1.330 1.435 sum -13.631 21.491 -5.420 26.019 Atomic orbital electron populations 1.20753 0.89057 1.03892 1.03314 1.19954 0.97801 0.91237 1.04300 1.20890 0.92883 0.97580 0.95534 1.21158 0.94820 0.97202 1.04778 1.17311 0.77346 0.92329 0.99334 1.91593 1.27901 1.97178 1.93139 1.20052 0.93257 0.94841 1.11398 1.17743 0.79610 0.83549 0.84899 1.90837 1.54040 1.63854 1.31131 1.46197 1.56840 1.25304 1.07613 1.21768 0.95773 0.83012 1.00196 1.21903 1.01012 1.00967 0.92001 1.19025 0.95042 0.89858 0.97392 1.21161 1.35991 1.06784 0.92265 0.92673 1.25028 0.95701 0.96592 0.97110 1.69951 1.38101 1.14476 1.30747 0.86631 0.78347 0.77885 0.84973 1.20229 1.21259 1.20236 1.17127 0.87350 0.81790 0.99702 1.91573 1.79413 1.45525 1.93087 0.90352 0.90728 0.90451 0.83446 0.83270 0.76521 0.91348 0.91334 0.92589 0.92598 0.96211 0.96209 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 9.83 36.01 0.35 -0.29 16 2 C -0.13 -1.06 5.88 -104.60 -0.62 -1.68 16 3 C -0.05 -0.31 9.68 -39.53 -0.38 -0.69 16 4 C -0.16 -1.21 10.01 -39.56 -0.40 -1.61 16 5 C 0.16 1.78 7.29 -38.96 -0.28 1.50 16 6 F -0.12 -1.57 16.83 2.25 0.04 -1.53 16 7 C -0.19 -2.51 5.64 -104.86 -0.59 -3.11 16 8 C 0.56 9.40 6.54 -12.47 -0.08 9.32 16 9 O -0.52 -10.83 17.11 5.29 0.09 -10.74 16 10 N -0.71 -11.21 5.55 -61.35 -0.34 -11.55 16 11 C 0.11 2.11 5.67 -4.05 -0.02 2.09 16 12 C -0.12 -2.42 5.27 -26.74 -0.14 -2.56 16 13 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 14 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.16 1.85 7.23 -38.97 -0.28 1.57 16 23 F -0.12 -1.54 16.03 2.25 0.04 -1.50 16 24 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.07 0.47 7.63 -51.93 -0.40 0.07 16 26 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 27 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 28 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 29 H 0.40 5.23 8.46 -40.82 -0.35 4.89 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -33.71 325.58 -7.05 -40.77 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -4.51 Total: -2.17 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.99 Total: -8.49 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.40 Total: -37.84 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.71 -7.05 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214788408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.544 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds