Wall clock time and date at job start Tue Mar 31 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38324 * 119.90503 * 2 1 4 4 C 1.38285 * 120.38470 * 179.97438 * 3 2 1 5 5 C 1.38245 * 120.18781 * 0.28204 * 4 3 2 6 6 F 1.35097 * 120.09476 * 179.71986 * 5 4 3 7 7 C 1.39885 * 119.80521 * 359.50954 * 5 4 3 8 8 C 1.47537 * 120.18905 * 180.23430 * 7 5 4 9 9 O 1.21590 * 119.99799 * 270.23454 * 8 7 5 10 10 N 1.34780 * 120.00080 * 90.22905 * 8 7 5 11 11 C 1.46498 * 120.00108 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.47336 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47449 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47244 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00055 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99990 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00206 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99886 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47547 * 60.00201 * 18 16 14 20 20 H 1.48500 * 109.47003 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47106 * 299.99792 * 18 16 14 22 22 C 1.38201 * 119.90384 * 180.02562 * 2 1 3 23 23 F 1.35102 * 120.09611 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47317 * 89.99770 * 1 2 3 25 25 H 1.08997 * 109.46914 * 210.00383 * 1 2 3 26 26 H 1.09001 * 109.46978 * 329.99721 * 1 2 3 27 27 H 1.08003 * 119.80572 * 0.02562 * 3 2 1 28 28 H 1.08002 * 119.90301 * 179.97438 * 4 3 2 29 29 H 0.96999 * 119.99990 * 0.02562 * 10 8 7 30 30 H 1.09003 * 109.46768 * 299.99996 * 11 10 8 31 31 H 1.09001 * 109.47674 * 59.99526 * 11 10 8 32 32 H 1.08993 * 109.47276 * 300.00274 * 12 11 10 33 33 H 1.09006 * 109.47141 * 59.99641 * 12 11 10 34 34 H 1.09003 * 109.47064 * 300.00213 * 13 12 11 35 35 H 1.09001 * 109.46982 * 60.00402 * 13 12 11 36 36 H 0.96996 * 120.00549 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1991 0.0000 4 6 3.5795 1.2106 0.0005 5 6 4.2846 0.0215 -0.0048 6 9 5.6355 0.0351 -0.0100 7 6 3.5952 -1.1956 -0.0004 8 6 4.3393 -2.4697 -0.0008 9 8 4.6459 -2.9942 -1.0540 10 7 4.6791 -3.0520 1.1662 11 6 5.4184 -4.3168 1.1658 12 6 5.6750 -4.7580 2.6081 13 6 6.4465 -6.0792 2.6077 14 6 6.6997 -6.5135 4.0283 15 1 6.3454 -5.9080 4.8494 16 6 7.3837 -7.6840 4.2799 17 7 7.8156 -8.4211 3.2801 18 14 7.6970 -8.2227 6.0409 19 1 6.4001 -8.4078 6.7401 20 1 8.4470 -9.5043 6.0404 21 1 8.4935 -7.1839 6.7420 22 6 2.1960 -1.1980 -0.0005 23 9 1.5205 -2.3680 -0.0016 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6519 2.1317 0.0004 28 1 4.1100 2.1514 0.0001 29 1 4.4342 -2.6337 2.0064 30 1 4.8334 -5.0793 0.6515 31 1 6.3702 -4.1812 0.6521 32 1 6.2596 -3.9957 3.1228 33 1 4.7229 -4.8938 3.1213 34 1 5.8614 -6.8415 2.0931 35 1 7.3985 -5.9439 2.0944 36 1 8.2972 -9.2443 3.4570 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214788408.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:32 Heat of formation + Delta-G solvation = -144.162341 kcal Electronic energy + Delta-G solvation = -21264.496535 eV Core-core repulsion = 17575.938705 eV Total energy + Delta-G solvation = -3688.557830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.24739 -50.20505 -41.15960 -39.63815 -37.11944 -35.30145 -33.89546 -33.07865 -32.04501 -28.76675 -27.73402 -25.90558 -24.43821 -23.17394 -22.45149 -21.54256 -19.42289 -18.78407 -18.62071 -18.44356 -17.54456 -16.91353 -16.83904 -16.60760 -16.54243 -16.46397 -15.80853 -15.57743 -15.26019 -15.00990 -14.30117 -14.28149 -14.08117 -13.83974 -13.62075 -13.19665 -12.92349 -12.74633 -12.70293 -12.68873 -12.61234 -12.45899 -11.74816 -11.73403 -11.35327 -11.14647 -10.57150 -10.36221 -10.21076 -9.70893 -8.21398 -6.33593 -0.38670 -0.18336 1.15131 1.40451 1.43962 1.51830 1.87186 2.17859 2.40894 2.61232 3.12160 3.22737 3.30989 3.60447 3.67809 3.95372 4.03861 4.10177 4.35033 4.44859 4.58155 4.75248 4.77938 4.81441 4.82668 4.84755 4.94208 5.09249 5.17180 5.20753 5.21388 5.47007 5.62433 5.64943 5.80294 6.17332 6.23456 6.83084 6.86784 7.36092 8.90704 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026722 B = 0.003093 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.573639 B = 9049.352874 C = 9316.726691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.028 4.028 4 C -0.141 4.141 5 C 0.134 3.866 6 F -0.138 7.138 7 C -0.216 4.216 8 C 0.557 3.443 9 O -0.573 6.573 10 N -0.700 5.700 11 C 0.127 3.873 12 C -0.101 4.101 13 C 0.025 3.975 14 C -0.544 4.544 15 H 0.067 0.933 16 C -0.003 4.003 17 N -0.935 5.935 18 Si 0.969 3.031 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.135 3.865 23 F -0.136 7.136 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.109 0.891 27 H 0.199 0.801 28 H 0.184 0.816 29 H 0.416 0.584 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.069 0.931 34 H -0.007 1.007 35 H -0.007 1.007 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.147 25.877 -4.336 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.046 4.046 4 C -0.160 4.160 5 C 0.114 3.886 6 F -0.116 7.116 7 C -0.221 4.221 8 C 0.343 3.657 9 O -0.453 6.453 10 N -0.350 5.350 11 C 0.003 3.997 12 C -0.139 4.139 13 C -0.013 4.013 14 C -0.582 4.582 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.190 1.190 22 C 0.115 3.885 23 F -0.115 7.115 24 H 0.106 0.894 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.216 0.784 28 H 0.201 0.799 29 H 0.253 0.747 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.011 0.989 35 H 0.011 0.989 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.800 25.268 -5.101 30.234 hybrid contribution 0.844 -1.371 0.776 1.787 sum -14.955 23.897 -4.325 28.521 Atomic orbital electron populations 1.20876 0.87081 1.04958 1.04197 1.20364 0.99181 0.90398 1.02255 1.21497 0.92315 0.98588 0.92166 1.21596 0.95483 0.96754 1.02153 1.17676 0.76808 0.93048 1.01076 1.91545 1.29279 1.97274 1.93531 1.19840 0.93903 0.93419 1.14949 1.18374 0.78838 0.84528 0.84003 1.90792 1.56095 1.65632 1.32751 1.46013 1.56204 1.24294 1.08519 1.21389 0.95303 0.84055 0.98920 1.21609 1.00921 0.98292 0.93060 1.18929 0.94115 0.92097 0.96144 1.21639 1.35942 1.07227 0.93388 0.91477 1.26048 0.95335 0.96688 1.02028 1.70105 1.38985 1.15024 1.33428 0.85435 0.78695 0.77503 0.79017 1.18950 1.21075 1.18962 1.17471 0.86839 0.82540 1.01659 1.91521 1.79598 1.46843 1.93503 0.89441 0.91861 0.87239 0.78409 0.79918 0.74732 0.92763 0.92711 0.91199 0.91235 0.98879 0.98873 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 9.83 71.24 0.70 -0.19 16 2 C -0.12 -1.58 5.88 -19.85 -0.12 -1.70 16 3 C -0.03 -0.20 9.68 22.30 0.22 0.01 16 4 C -0.14 -1.59 10.01 22.28 0.22 -1.37 16 5 C 0.13 2.91 7.29 22.67 0.17 3.07 16 6 F -0.14 -3.61 16.83 44.97 0.76 -2.85 16 7 C -0.22 -5.77 5.64 -20.02 -0.11 -5.89 16 8 C 0.56 19.70 6.54 86.70 0.57 20.27 16 9 O -0.57 -25.35 17.11 -4.00 -0.07 -25.42 16 10 N -0.70 -22.91 5.55 -466.27 -2.59 -25.50 16 11 C 0.13 4.90 5.67 86.38 0.49 5.39 16 12 C -0.10 -4.10 5.27 30.59 0.16 -3.94 16 13 C 0.02 1.33 4.97 29.85 0.15 1.48 16 14 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 16 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 17 N -0.94 -58.01 13.29 21.45 0.28 -57.72 16 18 Si 0.97 44.30 29.54 68.60 2.03 46.32 16 19 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 20 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 22 C 0.13 3.04 7.23 22.67 0.16 3.21 16 23 F -0.14 -3.67 16.03 44.97 0.72 -2.95 16 24 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.06 0.67 7.63 -2.39 -0.02 0.65 16 26 H 0.11 0.18 8.08 -2.39 -0.02 0.16 16 27 H 0.20 -0.45 8.06 -2.91 -0.02 -0.47 16 28 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 29 H 0.42 10.92 8.46 -92.71 -0.78 10.13 16 30 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 34 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 36 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -77.87 325.58 4.76 -73.12 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: 0.32 Total: 5.10 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 3.30 Total: -10.10 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -2.30 Total: -83.22 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.07 Total: -25.42 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.48 Total: -5.80 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -77.87 4.76 -73.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214788408.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.045 kcal (2) G-P(sol) polarization free energy of solvation -77.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds