Wall clock time and date at job start Tue Mar 31 2020 06:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 N 1.31785 * 119.08191 * 89.99535 * 3 2 1 5 5 C 1.32653 * 120.98840 * 179.97438 * 4 3 2 6 6 Cl 1.73607 * 120.41582 * 179.97438 * 5 4 3 7 7 C 1.38318 * 119.16868 * 0.02562 * 5 4 3 8 8 C 1.50700 * 120.83852 * 180.02562 * 7 5 4 9 9 C 1.39523 * 118.31956 * 359.97438 * 7 5 4 10 10 N 1.38561 * 120.52061 * 179.97438 * 9 7 5 11 11 C 1.46500 * 119.99898 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46837 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.46873 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47238 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00320 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00349 * 180.02562 * 14 13 12 17 17 N 1.31508 * 119.99755 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47447 * 89.99539 * 18 16 14 20 20 H 1.48494 * 109.47433 * 209.99647 * 18 16 14 21 21 H 1.48505 * 109.47252 * 329.99833 * 18 16 14 22 22 N 1.31742 * 119.07356 * 269.72960 * 3 2 1 23 23 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 26 26 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 27 27 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 28 28 H 1.09000 * 109.46686 * 90.00108 * 8 7 5 29 29 H 1.09000 * 109.46977 * 209.99859 * 8 7 5 30 30 H 1.08998 * 109.47780 * 330.00292 * 8 7 5 31 31 H 0.97006 * 119.99876 * 359.97438 * 10 9 7 32 32 H 1.08999 * 109.47449 * 299.99714 * 11 10 9 33 33 H 1.08999 * 109.47333 * 60.00339 * 11 10 9 34 34 H 1.09002 * 109.47417 * 299.99989 * 12 11 10 35 35 H 1.09000 * 109.47328 * 60.00149 * 12 11 10 36 36 H 1.09002 * 109.46878 * 300.00060 * 13 12 11 37 37 H 1.09000 * 109.47234 * 59.99832 * 13 12 11 38 38 H 0.97003 * 119.99921 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2459 2.0247 1.1517 5 6 2.6883 3.2745 1.1958 6 17 2.9638 4.0560 2.7214 7 6 2.9264 3.9476 0.0112 8 6 3.4298 5.3680 0.0174 9 6 2.6897 3.2778 -1.1897 10 7 2.9123 3.9088 -2.4031 11 6 2.6605 3.1946 -3.6571 12 6 2.9830 4.1107 -4.8394 13 6 2.7194 3.3650 -6.1491 14 6 3.0377 4.2671 -7.3136 15 1 3.3921 5.2719 -7.1372 16 6 2.8754 3.8100 -8.6042 17 7 2.4434 2.5866 -8.8191 18 14 3.2706 4.9279 -10.0476 19 1 4.6952 4.7571 -10.4306 20 1 2.4026 4.5746 -11.1995 21 1 3.0282 6.3409 -9.6603 22 7 2.2509 2.0225 -1.1514 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8934 -0.5137 0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 4.5198 5.3671 0.0185 29 1 3.0678 5.8857 -0.8709 30 1 3.0661 5.8786 0.9090 31 1 3.2349 4.8235 -2.4221 32 1 3.2910 2.3067 -3.7026 33 1 1.6124 2.8987 -3.7027 34 1 2.3522 4.9985 -4.7938 35 1 4.0310 4.4070 -4.7941 36 1 3.3500 2.4771 -6.1949 37 1 1.6713 3.0690 -6.1941 38 1 2.3296 2.2649 -9.7271 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267136647.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:35 Heat of formation + Delta-G solvation = 13.037457 kcal Electronic energy + Delta-G solvation = -19300.553807 eV Core-core repulsion = 16202.902103 eV Total energy + Delta-G solvation = -3097.651704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18136 -37.20984 -36.95205 -34.72605 -33.82681 -32.56278 -32.28730 -30.69186 -27.40686 -26.69619 -24.05746 -23.90787 -22.38213 -21.66881 -20.40578 -18.20553 -17.46927 -16.37845 -15.76402 -15.56337 -14.72009 -14.61769 -14.52081 -14.36120 -14.01177 -13.99783 -13.37999 -12.81703 -12.67971 -12.54028 -12.34165 -11.91037 -11.84379 -11.71488 -11.51938 -11.16388 -11.01845 -10.81615 -10.69231 -10.64269 -10.61273 -9.89021 -9.58591 -9.51007 -9.27702 -9.17244 -8.41722 -8.04927 -6.06376 -4.09608 0.78630 1.22212 1.51291 3.08919 3.27790 3.34477 3.37143 3.65533 3.90530 4.38243 4.43440 4.60505 4.73049 4.96174 5.15887 5.18959 5.29646 5.34293 5.40153 5.56677 5.63460 5.69422 5.76262 5.79923 5.90539 6.01987 6.08030 6.17347 6.51424 6.56855 6.67145 6.90614 7.11258 7.50482 7.57696 7.69615 7.91879 8.19851 8.32865 8.96802 9.54896 11.04859 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023271 B = 0.003172 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.914826 B = 8824.624257 C = 9917.622721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C 0.377 3.623 4 N -0.561 5.561 5 C 0.248 3.752 6 Cl -0.025 7.025 7 C -0.253 4.253 8 C -0.099 4.099 9 C 0.456 3.544 10 N -0.696 5.696 11 C 0.124 3.876 12 C -0.123 4.123 13 C 0.026 3.974 14 C -0.524 4.524 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 N -0.563 5.563 23 H 0.060 0.940 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.411 0.589 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.318 0.546 21.047 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.093 4.093 3 C 0.108 3.892 4 N -0.283 5.283 5 C 0.079 3.921 6 Cl 0.003 6.997 7 C -0.265 4.265 8 C -0.157 4.157 9 C 0.209 3.791 10 N -0.327 5.327 11 C 0.001 3.999 12 C -0.161 4.161 13 C -0.011 4.011 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.288 5.288 23 H 0.079 0.921 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.109 0.891 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.249 0.751 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.682 -0.501 20.817 20.834 hybrid contribution 0.678 1.863 -0.714 2.107 sum -0.004 1.362 20.103 20.149 Atomic orbital electron populations 1.21679 0.93423 1.02497 1.02510 1.20370 0.96869 0.87700 1.04330 1.22809 0.88598 0.96364 0.81390 1.67570 1.20474 1.09326 1.30894 1.21396 0.93743 0.90179 0.86765 1.98393 1.93871 1.77819 1.29577 1.20506 1.13958 1.00588 0.91473 1.20548 1.01353 0.90466 1.03362 1.18326 0.86791 0.87863 0.86093 1.45048 1.68535 1.16359 1.02730 1.21728 1.01437 0.95820 0.80867 1.21922 1.00608 0.98435 0.95133 1.19006 0.97407 0.95546 0.89189 1.21193 1.44658 0.99439 0.90933 0.92666 1.25021 0.95180 0.95127 0.99073 1.69958 1.46136 1.16105 1.21008 0.86581 0.78273 0.80944 0.82123 1.20630 1.21171 1.19883 1.67893 1.21410 1.09027 1.30438 0.92086 0.91406 0.92416 0.89126 0.88790 0.90765 0.91366 0.90598 0.75107 0.91494 0.91535 0.92725 0.92707 0.96244 0.96234 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.90 37.16 0.37 -1.01 16 2 C -0.05 -0.57 6.37 -27.88 -0.18 -0.75 16 3 C 0.38 5.28 6.90 -157.25 -1.08 4.19 16 4 N -0.56 -7.95 10.33 -7.93 -0.08 -8.04 16 5 C 0.25 3.29 7.32 -17.17 -0.13 3.16 16 6 Cl -0.03 -0.27 27.63 -51.86 -1.43 -1.71 16 7 C -0.25 -3.22 5.94 -104.11 -0.62 -3.84 16 8 C -0.10 -0.94 9.27 36.01 0.33 -0.60 16 9 C 0.46 6.61 7.49 -154.76 -1.16 5.45 16 10 N -0.70 -9.68 5.62 -60.28 -0.34 -10.02 16 11 C 0.12 2.05 5.73 -4.04 -0.02 2.02 16 12 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 13 C 0.03 0.64 4.97 -27.88 -0.14 0.51 16 14 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 15 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 N -0.56 -8.67 9.60 -9.98 -0.10 -8.77 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.58 6.67 -51.93 -0.35 0.23 16 30 H 0.08 0.65 7.02 -51.93 -0.36 0.28 16 31 H 0.41 4.81 6.60 -40.82 -0.27 4.54 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -30.40 335.08 -9.96 -40.35 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.59 Total: -0.95 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.18 Total: -6.49 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.22 Total: -52.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.43 Total: -1.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.40 -9.96 -40.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267136647.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.390 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds