Wall clock time and date at job start Tue Mar 31 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 F 1.39901 * 109.47232 * 209.99686 * 6 5 4 8 8 F 1.39894 * 109.47054 * 329.99662 * 6 5 4 9 9 C 1.50709 * 109.47444 * 89.99457 * 6 5 4 10 10 O 1.21281 * 119.99538 * 25.00204 * 9 6 5 11 11 N 1.34773 * 120.00134 * 205.00085 * 9 6 5 12 12 C 1.46496 * 119.99849 * 179.97438 * 11 9 6 13 13 C 1.53000 * 109.47191 * 180.02562 * 12 11 9 14 14 C 1.50695 * 109.47091 * 180.02562 * 13 12 11 15 15 H 1.07990 * 120.00421 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99873 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99911 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00156 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46977 * 60.00251 * 18 16 14 20 20 H 1.48499 * 109.47172 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47163 * 300.00188 * 18 16 14 22 22 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 23 23 C 1.38234 * 120.00033 * 0.49775 * 22 5 4 24 24 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 25 25 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 26 26 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 27 27 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 28 28 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 29 29 H 0.96996 * 119.99941 * 359.97438 * 11 9 6 30 30 H 1.09000 * 109.47516 * 300.00487 * 12 11 9 31 31 H 1.09004 * 109.46772 * 60.00351 * 12 11 9 32 32 H 1.09000 * 109.47259 * 300.00609 * 13 12 11 33 33 H 1.08996 * 109.46698 * 60.00347 * 13 12 11 34 34 H 0.96994 * 119.99387 * 179.97438 * 17 16 14 35 35 H 1.07999 * 119.99934 * 180.25938 * 22 5 4 36 36 H 1.08001 * 120.00294 * 179.76453 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 9 6.2425 -1.1411 -0.6736 8 9 6.2425 1.1434 -0.6692 9 6 6.2865 -0.0027 1.4088 10 8 5.5945 -0.4483 2.2996 11 7 7.5095 0.4900 1.6878 12 6 8.0028 0.4879 3.0672 13 6 9.4054 1.0979 3.1082 14 6 9.9131 1.0951 4.5270 15 1 9.2973 0.6977 5.3201 16 6 11.1644 1.5991 4.8125 17 7 11.9146 2.0827 3.8465 18 14 11.7935 1.5964 6.5713 19 1 11.8451 0.2009 7.0764 20 1 13.1548 2.1884 6.6110 21 1 10.8804 2.3984 7.4249 22 6 3.5805 -1.1972 0.0010 23 6 2.1982 -1.1972 0.0009 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6582 2.1324 -0.0004 28 1 4.1205 2.1325 0.0001 29 1 8.0630 0.8460 0.9753 30 1 7.3326 1.0764 3.6937 31 1 8.0408 -0.5365 3.4379 32 1 10.0759 0.5098 2.4815 33 1 9.3670 2.1222 2.7376 34 1 12.7946 2.4376 4.0474 35 1 4.1205 -2.1325 0.0013 36 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273071906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:24 Heat of formation + Delta-G solvation = -121.596623 kcal Electronic energy + Delta-G solvation = -21563.806780 eV Core-core repulsion = 17876.227473 eV Total energy + Delta-G solvation = -3687.579307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.30582 -47.30671 -39.78749 -39.05972 -35.18430 -33.52831 -32.94428 -31.17047 -30.12934 -28.84203 -25.99691 -24.40810 -22.97880 -21.79949 -21.02511 -20.47571 -18.32939 -17.98105 -17.67880 -16.49292 -15.65449 -15.36947 -15.24368 -14.82378 -14.71859 -14.66324 -14.24960 -14.03115 -14.02207 -13.80121 -13.40630 -13.23064 -13.03875 -12.52255 -12.48267 -12.34720 -12.23219 -11.44813 -11.29611 -11.25285 -11.07206 -10.71580 -10.43190 -10.04842 -9.61139 -9.33103 -9.13309 -8.92714 -8.77008 -8.44695 -6.12830 -4.16591 0.91024 1.19934 2.34827 2.80631 3.29131 3.33302 3.36298 3.38663 3.72111 3.97293 4.37820 4.40372 4.62132 4.70924 4.72738 4.79330 5.13470 5.20145 5.24109 5.29711 5.46906 5.47629 5.76044 5.82178 6.09698 6.14443 6.20024 6.21778 6.33064 6.52646 6.64127 6.70600 7.41061 7.53671 7.62608 7.83898 8.09575 8.25604 8.88675 9.48464 10.98672 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031553 B = 0.003245 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.177037 B = 8625.548941 C = 8939.338248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.069 4.069 3 C -0.123 4.123 4 C -0.077 4.077 5 C -0.144 4.144 6 C 0.331 3.669 7 F -0.177 7.177 8 F -0.182 7.182 9 C 0.480 3.520 10 O -0.504 6.504 11 N -0.699 5.699 12 C 0.119 3.881 13 C 0.012 3.988 14 C -0.525 4.525 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.064 4.064 23 C -0.124 4.124 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.129 0.871 28 H 0.132 0.868 29 H 0.405 0.595 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.025 0.975 34 H 0.264 0.736 35 H 0.131 0.869 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.430 -3.371 -11.208 22.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.095 4.095 5 C -0.146 4.146 6 C 0.291 3.709 7 F -0.158 7.158 8 F -0.163 7.163 9 C 0.259 3.741 10 O -0.379 6.379 11 N -0.348 5.348 12 C -0.003 4.003 13 C -0.025 4.025 14 C -0.563 4.563 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.531 5.531 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.082 4.082 23 C -0.142 4.142 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.240 0.760 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.149 0.851 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.692 -3.603 -10.594 22.650 hybrid contribution 0.991 0.229 0.388 1.089 sum -18.701 -3.374 -10.207 21.570 Atomic orbital electron populations 1.20833 0.90841 1.03121 1.02486 1.20077 0.96349 0.93210 0.97267 1.20966 0.93453 0.97926 1.01798 1.20915 0.94657 0.97107 0.96802 1.19749 0.91311 0.95906 1.07594 1.19800 0.91214 0.72617 0.87277 1.93070 1.90112 1.50520 1.82074 1.93051 1.90021 1.50403 1.82820 1.20459 0.83503 0.81066 0.89054 1.90761 1.56250 1.45353 1.45578 1.46396 1.15612 1.59704 1.13124 1.21938 0.98378 1.01539 0.78402 1.19345 0.88382 0.96420 0.98390 1.20972 1.01255 1.41308 0.92796 0.92211 1.25000 0.96690 0.94972 0.97560 1.69946 1.10677 1.40531 1.31974 0.86547 0.77900 0.78484 0.84461 1.20074 1.21195 1.20076 1.20875 0.94469 0.97153 0.95733 1.20982 0.93501 0.97905 1.01768 0.90897 0.91268 0.91270 0.85308 0.85050 0.75984 0.91865 0.91856 0.95697 0.95676 0.92685 0.85109 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.01 36.01 0.36 -0.41 16 2 C -0.07 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.08 -0.95 9.40 -39.58 -0.37 -1.32 16 5 C -0.14 -2.00 4.39 -104.63 -0.46 -2.46 16 6 C 0.33 4.97 2.22 -29.03 -0.06 4.91 16 7 F -0.18 -2.64 16.20 2.25 0.04 -2.60 16 8 F -0.18 -2.60 15.66 2.25 0.04 -2.57 16 9 C 0.48 8.48 7.22 -10.98 -0.08 8.40 16 10 O -0.50 -10.18 16.23 5.56 0.09 -10.09 16 11 N -0.70 -12.58 5.49 -60.29 -0.33 -12.91 16 12 C 0.12 2.49 5.61 -4.04 -0.02 2.46 16 13 C 0.01 0.30 5.09 -27.89 -0.14 0.15 16 14 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.67 5.46 -17.81 -0.10 1.57 16 17 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 18 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 C -0.06 -0.81 9.35 -39.58 -0.37 -1.18 16 23 C -0.12 -1.29 9.70 -39.58 -0.38 -1.68 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 26 H 0.07 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.13 1.48 7.60 -52.49 -0.40 1.08 16 29 H 0.41 6.59 8.03 -40.82 -0.33 6.27 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.13 1.55 7.61 -52.49 -0.40 1.15 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -30.79 323.15 -6.99 -37.78 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.47 Total: 1.74 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.94 Total: -7.20 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.41 Total: -38.13 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.07 Total: -5.17 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.79 -6.99 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273071906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.816 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds