Wall clock time and date at job start Tue Mar 31 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46947 * 2 1 4 4 C 1.52999 * 109.47513 * 120.00383 * 2 1 3 5 5 C 1.52997 * 109.47083 * 64.99634 * 4 2 1 6 6 N 1.46501 * 109.47229 * 180.02562 * 5 4 2 7 7 C 1.46498 * 119.99929 * 270.00212 * 6 5 4 8 8 C 1.50695 * 109.47654 * 269.99775 * 7 6 5 9 9 H 1.08008 * 119.99809 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00557 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99908 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00061 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47157 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46816 * 120.00203 * 12 10 8 15 15 H 1.48500 * 109.46840 * 239.99863 * 12 10 8 16 16 C 1.38991 * 119.99830 * 90.00416 * 6 5 4 17 17 C 1.39301 * 120.08474 * 185.02663 * 16 6 5 18 18 N 1.31946 * 119.92829 * 179.97438 * 17 16 6 19 19 C 1.32234 * 120.09739 * 359.97438 * 18 17 16 20 20 C 1.38334 * 120.17441 * 0.02562 * 19 18 17 21 21 Cl 1.73602 * 119.96562 * 180.02562 * 20 19 18 22 22 N 1.32341 * 120.07693 * 359.97438 * 20 19 18 23 23 H 1.09004 * 109.46869 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46842 * 299.99119 * 1 2 3 25 25 H 1.08996 * 109.47447 * 59.99856 * 1 2 3 26 26 H 1.09005 * 109.46992 * 240.00352 * 2 1 3 27 27 H 1.09006 * 109.46740 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47164 * 300.00317 * 3 2 1 29 29 H 1.09000 * 109.47065 * 60.00835 * 3 2 1 30 30 H 1.09003 * 109.46949 * 305.00118 * 4 2 1 31 31 H 1.09003 * 109.47452 * 185.00044 * 4 2 1 32 32 H 1.09003 * 109.46833 * 60.00413 * 5 4 2 33 33 H 1.08994 * 109.47529 * 300.00505 * 5 4 2 34 34 H 1.09006 * 109.47270 * 30.00167 * 7 6 5 35 35 H 1.09006 * 109.46934 * 149.99789 * 7 6 5 36 36 H 0.97004 * 120.00102 * 180.02562 * 11 10 8 37 37 H 1.08003 * 120.03770 * 359.97438 * 17 16 6 38 38 H 1.08003 * 119.91130 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1878 6 7 2.1232 -2.8861 2.3842 7 6 3.4514 -3.5041 2.3828 8 6 3.3411 -4.9312 1.9117 9 1 2.3778 -5.3373 1.6400 10 6 4.4696 -5.7188 1.8274 11 7 5.6425 -5.2246 2.1586 12 14 4.3325 -7.4881 1.2441 13 1 2.9136 -7.7990 0.9354 14 1 5.1562 -7.6716 0.0222 15 1 4.8189 -8.3999 2.3105 16 6 1.3259 -2.9549 3.5206 17 6 1.8267 -3.5183 4.6920 18 7 1.0673 -3.5817 5.7691 19 6 -0.1679 -3.1106 5.7382 20 6 -0.6695 -2.5502 4.5771 21 17 -2.2917 -1.9329 4.5428 22 7 0.0862 -2.4832 3.4928 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6055 -0.2619 2.1369 31 1 3.1264 -0.6444 1.2951 32 1 2.0699 -2.6549 0.3001 33 1 0.5491 -2.2724 1.1419 34 1 4.1092 -2.9502 1.7129 35 1 3.8619 -3.4855 3.3924 36 1 6.4366 -5.7785 2.0989 37 1 2.8356 -3.9030 4.7185 38 1 -0.7871 -3.1644 6.6215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278946152.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:59 Heat of formation + Delta-G solvation = 26.896523 kcal Electronic energy + Delta-G solvation = -20220.455534 eV Core-core repulsion = 17123.404804 eV Total energy + Delta-G solvation = -3097.050730 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.56084 -37.49734 -36.53443 -35.51828 -33.64132 -32.64629 -30.43193 -28.97045 -27.06372 -26.76307 -24.44855 -23.75544 -22.80279 -20.79388 -19.77854 -17.33530 -17.17518 -16.65588 -15.92937 -15.19270 -14.96273 -14.77070 -14.69768 -14.11247 -13.57433 -13.29729 -12.86784 -12.53244 -12.45968 -12.14100 -11.92694 -11.78342 -11.40778 -11.29023 -11.22386 -11.13187 -11.00043 -10.88235 -10.79167 -10.60080 -10.50928 -10.31135 -10.08776 -9.84505 -9.12508 -8.76360 -8.61042 -7.06027 -6.23643 -4.34067 1.26300 1.70899 1.92730 3.18564 3.27454 3.31063 3.55107 4.15273 4.28898 4.80236 4.90132 4.93929 5.04493 5.08147 5.09101 5.18075 5.49350 5.64331 5.68990 5.78271 5.84599 5.85222 5.92419 5.96526 6.06644 6.19225 6.27826 6.34733 6.51465 6.60511 6.64044 6.79825 7.02441 7.33152 7.68339 7.86854 7.93665 8.06765 8.31223 8.74358 9.34258 10.80535 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011106 B = 0.006435 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2520.471412 B = 4349.855298 C = 6169.406760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.127 4.127 5 C 0.123 3.877 6 N -0.567 5.567 7 C 0.247 3.753 8 C -0.540 4.540 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.898 3.102 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.281 1.281 16 C 0.392 3.608 17 C 0.006 3.994 18 N -0.393 5.393 19 C -0.034 4.034 20 C 0.179 3.821 21 Cl -0.042 7.042 22 N -0.517 5.517 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.266 0.734 37 H 0.181 0.819 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.196 9.035 0.214 12.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.165 4.165 5 C -0.001 4.001 6 N -0.274 5.274 7 C 0.128 3.872 8 C -0.579 4.579 9 H 0.080 0.920 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.725 3.275 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.207 1.207 16 C 0.151 3.849 17 C -0.166 4.166 18 N -0.106 5.106 19 C -0.194 4.194 20 C 0.011 3.989 21 Cl -0.014 7.014 22 N -0.244 5.244 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.198 0.802 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.003 9.045 0.043 12.762 hybrid contribution -0.153 -0.930 -0.462 1.050 sum -9.156 8.115 -0.419 12.242 Atomic orbital electron populations 1.21859 0.95243 1.02068 1.01115 1.21043 0.95893 0.95891 0.98418 1.21819 1.00907 0.96188 1.01274 1.22011 1.01066 0.95872 0.97595 1.21467 1.00147 0.90856 0.87585 1.47346 1.17198 1.53939 1.08892 1.19547 0.76042 0.92864 0.98745 1.21516 0.94308 0.96227 1.45858 0.91998 1.24929 0.94999 0.98858 0.94883 1.69919 0.98539 1.36938 1.47394 0.86431 0.78338 0.84162 0.78527 1.19701 1.20775 1.20657 1.19312 0.86804 0.89857 0.88971 1.23510 1.02209 1.03024 0.87900 1.68343 1.03595 1.10881 1.27765 1.22856 0.94365 1.04478 0.97691 1.22388 0.88444 0.96595 0.91493 1.98374 1.18574 1.86003 1.98475 1.67137 1.04747 1.23860 1.28675 0.92236 0.92801 0.93339 0.91180 0.92780 0.93034 0.92959 0.92198 0.91856 0.90470 0.90257 0.93829 0.94229 0.92402 0.80197 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.95 37.16 0.33 -1.40 16 2 C -0.09 -1.16 2.92 -90.62 -0.26 -1.43 16 3 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 4 C -0.13 -1.89 5.01 -26.73 -0.13 -2.03 16 5 C 0.12 2.12 5.23 -4.04 -0.02 2.10 16 6 N -0.57 -11.31 2.57 -175.08 -0.45 -11.76 16 7 C 0.25 5.62 5.01 -5.20 -0.03 5.60 16 8 C -0.54 -13.76 9.39 -34.44 -0.32 -14.09 16 9 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 12 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 13 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 C 0.39 7.74 7.37 -154.74 -1.14 6.60 16 17 C 0.01 0.11 10.43 -17.11 -0.18 -0.07 16 18 N -0.39 -7.26 10.49 -12.85 -0.13 -7.39 16 19 C -0.03 -0.55 10.99 -17.34 -0.19 -0.74 16 20 C 0.18 2.98 7.28 -17.30 -0.13 2.86 16 21 Cl -0.04 -0.58 29.13 -51.86 -1.51 -2.09 16 22 N -0.52 -9.60 9.24 -9.36 -0.09 -9.68 16 23 H 0.06 0.75 6.57 -51.93 -0.34 0.41 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 33 H 0.08 1.37 5.74 -51.93 -0.30 1.07 16 34 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 35 H 0.04 0.93 6.00 -51.93 -0.31 0.62 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.18 3.64 6.04 -52.48 -0.32 3.33 16 38 H 0.16 2.09 8.06 -52.48 -0.42 1.67 16 LS Contribution 332.61 15.07 5.01 5.01 Total: -1.00 -26.36 332.61 -8.74 -35.09 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.46 Total: 0.88 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.83 Total: -2.21 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.06 Total: -52.11 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.51 Total: -2.09 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.36 -8.74 -35.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278946152.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.991 kcal (2) G-P(sol) polarization free energy of solvation -26.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds