Wall clock time and date at job start Tue Mar 31 2020 05:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86796 * 120.00155 * 2 1 4 4 H 1.48499 * 109.47261 * 269.99980 * 3 2 1 5 5 H 1.48499 * 109.47410 * 30.00110 * 3 2 1 6 6 H 1.48501 * 109.47471 * 150.00078 * 3 2 1 7 7 C 1.37872 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00180 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00074 * 0.02562 * 7 2 1 10 10 S 1.81406 * 109.47044 * 180.02562 * 9 7 2 11 11 C 1.76201 * 102.99596 * 180.02562 * 10 9 7 12 12 C 1.38724 * 120.10569 * 359.97438 * 11 10 9 13 13 C 1.38247 * 119.99820 * 179.97438 * 12 11 10 14 14 C 1.38275 * 120.19312 * 0.02562 * 13 12 11 15 15 C 1.38284 * 120.20418 * 0.02562 * 14 13 12 16 16 C 1.38641 * 120.00818 * 359.97438 * 15 14 13 17 17 N 1.40000 * 120.10373 * 179.97438 * 16 15 14 18 18 C 1.46502 * 119.99414 * 0.02562 * 17 16 15 19 19 C 1.53002 * 109.46867 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47412 * 179.97438 * 19 18 17 21 21 C 1.52993 * 109.47532 * 179.97438 * 20 19 18 22 22 F 1.39891 * 109.47672 * 180.02562 * 21 20 19 23 23 H 0.97006 * 119.99920 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47174 * 59.99905 * 9 7 2 25 25 H 1.09004 * 109.47152 * 299.99649 * 9 7 2 26 26 H 1.08007 * 120.00050 * 359.97438 * 12 11 10 27 27 H 1.07996 * 119.90240 * 180.28222 * 13 12 11 28 28 H 1.08004 * 119.89329 * 179.97438 * 14 13 12 29 29 H 1.07997 * 119.99813 * 179.97438 * 15 14 13 30 30 H 0.97001 * 120.00243 * 179.97438 * 17 16 15 31 31 H 1.08999 * 109.47103 * 299.99203 * 18 17 16 32 32 H 1.08999 * 109.47301 * 59.99857 * 18 17 16 33 33 H 1.09003 * 109.47155 * 299.99728 * 19 18 17 34 34 H 1.09004 * 109.47612 * 59.99753 * 19 18 17 35 35 H 1.09003 * 109.46792 * 300.00015 * 20 19 18 36 36 H 1.09004 * 109.46881 * 59.99370 * 20 19 18 37 37 H 1.09007 * 109.46854 * 300.00288 * 21 20 19 38 38 H 1.08999 * 109.47464 * 59.99046 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 16 2.4298 -3.8779 0.0021 11 6 1.3823 -5.2948 0.0011 12 6 0.0037 -5.1409 0.0001 13 6 -0.8161 -6.2541 -0.0012 14 6 -0.2660 -7.5228 -0.0009 15 6 1.1072 -7.6857 0.0012 16 6 1.9371 -6.5751 0.0025 17 7 3.3277 -6.7377 0.0051 18 6 3.9077 -8.0830 0.0060 19 6 5.4343 -7.9801 0.0083 20 6 6.0402 -9.3850 0.0098 21 6 7.5667 -9.2821 0.0115 22 9 8.1208 -10.5666 0.0123 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 -0.4293 -4.1514 0.0003 27 1 -1.8892 -6.1326 -0.0066 28 1 -0.9110 -8.3891 -0.0015 29 1 1.5332 -8.6780 0.0018 30 1 3.9070 -5.9597 0.0056 31 1 3.5782 -8.6202 0.8953 32 1 3.5815 -8.6199 -0.8847 33 1 5.7636 -7.4430 -0.8812 34 1 5.7610 -7.4429 0.8988 35 1 5.7109 -9.9217 0.8996 36 1 5.7136 -9.9225 -0.8804 37 1 7.8956 -8.7454 -0.8785 38 1 7.8937 -8.7443 0.9014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285347692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:36 Heat of formation + Delta-G solvation = -52.859564 kcal Electronic energy + Delta-G solvation = -18716.611995 eV Core-core repulsion = 15598.226527 eV Total energy + Delta-G solvation = -3118.385468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.90367 -39.01833 -36.55489 -33.98506 -33.22327 -30.70828 -29.80631 -28.55149 -27.15965 -23.90928 -23.16031 -22.51063 -21.45922 -20.90833 -17.60804 -16.83006 -16.41878 -16.25532 -15.97772 -15.85752 -15.30427 -15.12158 -14.69221 -14.18708 -13.61216 -13.56238 -13.50024 -12.92905 -12.77087 -12.36753 -12.27786 -12.18321 -12.02479 -11.52736 -11.47753 -11.14022 -10.96785 -10.94755 -10.90350 -10.68762 -9.97929 -9.85181 -9.66665 -9.12473 -9.06104 -8.62329 -7.49119 -6.33504 -6.25862 -4.31273 1.73233 1.97052 2.55034 3.22226 3.28215 3.32712 3.47520 3.75418 4.20624 4.24190 4.30126 4.37710 4.57215 4.76075 4.83891 4.98022 5.11615 5.20646 5.33552 5.36194 5.36551 5.40636 5.59442 5.67617 5.83358 5.86585 5.87787 6.06337 6.30624 6.52048 6.72616 6.97688 6.99719 7.02814 7.17392 7.58506 7.67126 7.91548 7.93475 8.69682 9.32419 10.85400 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015603 B = 0.003520 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.087280 B = 7953.724912 C = 9711.459206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.518 4.518 8 H 0.068 0.932 9 C 0.080 3.920 10 S -0.181 6.181 11 C -0.136 4.136 12 C -0.089 4.089 13 C -0.159 4.159 14 C -0.094 4.094 15 C -0.189 4.189 16 C 0.222 3.778 17 N -0.747 5.747 18 C 0.130 3.870 19 C -0.131 4.131 20 C -0.148 4.148 21 C 0.060 3.940 22 F -0.221 7.221 23 H 0.267 0.733 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.404 0.596 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 -17.410 0.013 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.557 4.557 8 H 0.086 0.914 9 C -0.067 4.067 10 S 0.063 5.937 11 C -0.253 4.253 12 C -0.114 4.114 13 C -0.181 4.181 14 C -0.116 4.116 15 C -0.214 4.214 16 C 0.115 3.885 17 N -0.380 5.380 18 C 0.006 3.994 19 C -0.169 4.169 20 C -0.187 4.187 21 C 0.005 3.995 22 F -0.202 7.202 23 H 0.076 0.924 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.148 0.852 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.241 0.759 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.463 -17.331 0.019 19.287 hybrid contribution -0.884 1.055 -0.013 1.376 sum 7.579 -16.276 0.006 17.954 Atomic orbital electron populations 1.69946 1.06144 1.27506 1.49109 1.24950 0.94991 0.99297 0.94460 0.86334 0.79725 0.82114 0.78391 1.20290 1.20898 1.19527 1.20629 0.93430 0.88644 1.53036 0.91436 1.21304 0.94174 0.90567 1.00681 1.84864 1.18613 0.98446 1.91740 1.21490 0.97089 0.95833 1.10868 1.21185 0.91715 0.99736 0.98766 1.20805 0.99170 0.92261 1.05819 1.20767 0.94107 0.96840 0.99863 1.20418 0.93428 0.96388 1.11143 1.17286 0.83583 0.91831 0.95830 1.44691 1.03102 1.07105 1.83069 1.21195 0.92177 0.85099 1.00969 1.21666 0.94952 0.96722 1.03589 1.22060 0.94465 0.98002 1.04134 1.22016 0.93417 0.80268 1.03771 1.92762 1.87031 1.42233 1.98207 0.92355 0.93927 0.93923 0.85218 0.86631 0.86721 0.86571 0.75917 0.92484 0.92495 0.90714 0.90718 0.90449 0.90457 0.90629 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.52 -14.28 9.13 -34.44 -0.31 -14.59 16 8 H 0.07 1.84 7.71 -52.48 -0.40 1.44 16 9 C 0.08 2.03 4.09 36.01 0.15 2.18 16 10 S -0.18 -3.90 20.37 -107.50 -2.19 -6.09 16 11 C -0.14 -2.64 6.12 -38.92 -0.24 -2.88 16 12 C -0.09 -1.69 9.36 -39.40 -0.37 -2.06 16 13 C -0.16 -2.54 10.04 -39.56 -0.40 -2.94 16 14 C -0.09 -1.34 10.04 -39.55 -0.40 -1.74 16 15 C -0.19 -2.76 9.31 -39.42 -0.37 -3.13 16 16 C 0.22 3.70 6.66 -83.49 -0.56 3.14 16 17 N -0.75 -10.50 5.68 -58.44 -0.33 -10.83 16 18 C 0.13 1.31 4.92 -4.04 -0.02 1.29 16 19 C -0.13 -1.02 5.33 -26.73 -0.14 -1.17 16 20 C -0.15 -0.99 5.67 -26.73 -0.15 -1.14 16 21 C 0.06 0.41 7.55 37.15 0.28 0.69 16 22 F -0.22 -2.14 17.36 2.25 0.04 -2.10 16 23 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.04 1.14 7.75 -51.92 -0.40 0.74 16 25 H 0.04 1.14 7.75 -51.92 -0.40 0.74 16 26 H 0.13 2.65 5.88 -52.48 -0.31 2.34 16 27 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 28 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.12 1.39 6.74 -52.49 -0.35 1.04 16 30 H 0.40 5.93 7.02 -40.82 -0.29 5.64 16 31 H 0.06 0.55 7.95 -51.93 -0.41 0.14 16 32 H 0.06 0.55 7.95 -51.93 -0.41 0.14 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 333.26 15.07 5.02 5.02 Total: -1.00 -29.58 333.26 -9.87 -39.45 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -5.50 Total: 3.89 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -2.62 Total: -20.59 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.40 Total: -35.52 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -3.90 SS G_CDS: -2.19 Total: -6.09 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.58 -9.87 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285347692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.410 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds