Wall clock time and date at job start Tue Mar 31 2020 05:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86789 * 120.00223 * 2 1 4 4 H 1.48502 * 109.47377 * 269.99782 * 3 2 1 5 5 H 1.48503 * 109.47363 * 29.99720 * 3 2 1 6 6 H 1.48499 * 109.47424 * 149.99975 * 3 2 1 7 7 C 1.38817 * 119.99926 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00514 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99688 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00077 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.01518 * 325.06266 * 10 9 7 12 12 C 1.53876 * 110.03606 * 86.45131 * 10 9 7 13 13 C 1.54258 * 106.60077 * 119.28555 * 12 10 9 14 14 C 1.54889 * 104.19575 * 336.39583 * 13 12 10 15 15 C 1.54271 * 110.03674 * 203.62016 * 10 9 7 16 16 H 1.09002 * 110.48471 * 145.64465 * 15 10 9 17 17 O 1.42895 * 110.48131 * 23.00311 * 15 10 9 18 18 C 1.35900 * 116.99724 * 160.44989 * 17 15 10 19 19 C 1.38705 * 120.02901 * 4.99235 * 18 17 15 20 20 C 1.38378 * 119.96827 * 179.81311 * 19 18 17 21 21 F 1.35100 * 119.98802 * 180.19103 * 20 19 18 22 22 C 1.38465 * 120.03085 * 0.44702 * 20 19 18 23 23 C 1.38459 * 120.05772 * 359.78828 * 22 20 19 24 24 F 1.35093 * 119.98455 * 179.97438 * 23 22 20 25 25 C 1.38379 * 120.02778 * 0.02562 * 23 22 20 26 26 H 0.97001 * 119.99794 * 0.02562 * 1 2 3 27 27 H 0.97000 * 120.00283 * 359.97438 * 9 7 2 28 28 H 1.09007 * 110.02711 * 0.02562 * 12 10 9 29 29 H 1.09000 * 110.03532 * 238.57478 * 12 10 9 30 30 H 1.09001 * 110.48914 * 217.71404 * 13 12 10 31 31 H 1.09008 * 110.48636 * 95.07024 * 13 12 10 32 32 H 1.09002 * 110.75720 * 156.25614 * 14 13 12 33 33 H 1.09009 * 110.75559 * 279.62426 * 14 13 12 34 34 H 1.07996 * 120.01364 * 0.02562 * 19 18 17 35 35 H 1.08001 * 119.96992 * 179.76291 * 22 20 19 36 36 H 1.07999 * 120.01309 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 1 2.9715 -3.5602 -0.5860 12 6 2.3989 -4.0687 1.4434 13 6 1.7084 -5.4260 1.6892 14 6 0.5456 -5.4514 0.6663 15 6 1.1720 -4.7785 -0.5802 16 1 1.7781 -5.4940 -1.1360 17 8 0.1528 -4.2280 -1.4168 18 6 -0.4358 -5.0695 -2.3070 19 6 -0.1149 -6.4189 -2.3034 20 6 -0.7178 -7.2752 -3.2078 21 9 -0.4083 -8.5903 -3.2021 22 6 -1.6343 -6.7840 -4.1222 23 6 -1.9520 -5.4364 -4.1300 24 9 -2.8459 -4.9586 -5.0231 25 6 -1.3533 -4.5785 -3.2241 26 1 -0.4850 0.8401 -0.0004 27 1 0.3555 -2.3881 0.0005 28 1 2.0191 -3.3247 2.1437 29 1 3.4780 -4.1727 1.5569 30 1 1.3223 -5.4789 2.7071 31 1 2.4010 -6.2462 1.4998 32 1 0.2491 -6.4765 0.4438 33 1 -0.3032 -4.8733 1.0318 34 1 0.6028 -6.8016 -1.5928 35 1 -2.1015 -7.4526 -4.8301 36 1 -1.6009 -3.5273 -3.2307 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285528964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:17 Heat of formation + Delta-G solvation = -91.944790 kcal Electronic energy + Delta-G solvation = -22141.989882 eV Core-core repulsion = 18455.696374 eV Total energy + Delta-G solvation = -3686.293507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.11754 -49.04328 -40.24588 -37.99359 -36.04932 -33.50392 -30.65469 -30.50700 -29.96400 -27.67583 -26.70115 -23.47301 -22.90538 -22.77373 -20.50580 -19.53037 -18.70482 -17.47359 -17.15630 -16.49321 -16.28253 -16.10560 -15.77461 -15.37093 -15.05731 -14.79484 -14.58465 -14.38002 -14.09989 -13.35841 -13.26225 -13.00813 -12.47104 -12.07228 -11.89981 -11.71210 -11.56637 -11.26874 -11.03832 -10.79253 -10.75418 -10.52803 -10.31673 -10.17761 -9.97285 -9.62676 -8.91568 -8.87032 -8.33251 -6.95027 -5.75276 -3.04269 0.89692 1.08648 3.12739 3.35998 3.43646 3.48872 3.50423 3.87676 4.34753 4.58457 4.75027 4.77912 4.81085 4.87361 4.95012 5.11160 5.20378 5.43913 5.57529 5.65622 5.75331 5.81049 5.87121 5.92677 5.97390 6.00440 6.06990 6.16825 6.34456 6.38204 6.47011 6.59532 6.68748 7.00363 7.51035 7.70696 8.42873 9.54982 10.11694 10.48278 11.46803 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016906 B = 0.005037 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.776887 B = 5557.290669 C = 6916.944089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.010 4.010 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.710 5.710 10 C 0.183 3.817 11 H 0.057 0.943 12 C -0.147 4.147 13 C -0.119 4.119 14 C -0.146 4.146 15 C 0.067 3.933 16 H 0.077 0.923 17 O -0.264 6.264 18 C 0.205 3.795 19 C -0.264 4.264 20 C 0.167 3.833 21 F -0.133 7.133 22 C -0.242 4.242 23 C 0.169 3.831 24 F -0.128 7.128 25 C -0.199 4.199 26 H 0.255 0.745 27 H 0.391 0.609 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.894 -15.569 -3.852 16.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.352 5.352 10 C 0.072 3.928 11 H 0.075 0.925 12 C -0.187 4.187 13 C -0.157 4.157 14 C -0.184 4.184 15 C 0.010 3.990 16 H 0.095 0.905 17 O -0.174 6.174 18 C 0.156 3.844 19 C -0.284 4.284 20 C 0.147 3.853 21 F -0.111 7.111 22 C -0.262 4.262 23 C 0.149 3.851 24 F -0.106 7.106 25 C -0.219 4.219 26 H 0.065 0.935 27 H 0.226 0.774 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.827 -15.212 -3.841 15.711 hybrid contribution 0.140 0.542 -0.133 0.576 sum -0.686 -14.669 -3.974 15.213 Atomic orbital electron populations 1.69676 1.05065 1.25579 1.57268 1.24724 0.95464 0.97573 1.02875 0.86230 0.78652 0.84011 0.77507 1.21753 1.21817 1.20803 1.19224 0.90904 0.84060 1.43084 0.91257 1.42243 1.06114 0.98865 1.87951 1.20908 0.93228 0.85713 0.92993 0.92517 1.23057 0.99291 0.96212 1.00172 1.22207 0.96692 0.98190 0.98597 1.23049 0.99597 1.00025 0.95722 1.23928 0.88249 0.97282 0.89583 0.90484 1.86408 1.49799 1.35475 1.45729 1.18431 0.90126 0.87825 0.88016 1.21315 1.08267 0.93330 1.05449 1.16874 0.95269 0.77702 0.95457 1.91515 1.91654 1.32187 1.95743 1.20767 1.05243 0.95269 1.04903 1.16788 0.89018 0.90904 0.88381 1.91532 1.64963 1.88649 1.65500 1.20448 1.01684 1.02210 0.97557 0.93535 0.77399 0.90180 0.92613 0.91733 0.92157 0.91801 0.89858 0.83442 0.83740 0.82760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.90 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -6.56 9.96 -15.06 -0.15 -6.70 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.71 -17.29 4.64 -52.34 -0.24 -17.53 16 10 C 0.18 3.45 3.50 -66.81 -0.23 3.22 16 11 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 12 C -0.15 -2.40 6.59 -25.62 -0.17 -2.57 16 13 C -0.12 -1.56 6.83 -25.08 -0.17 -1.73 16 14 C -0.15 -2.03 6.20 -24.74 -0.15 -2.18 16 15 C 0.07 1.05 2.60 -25.07 -0.07 0.98 16 16 H 0.08 1.04 6.54 -51.93 -0.34 0.70 16 17 O -0.26 -4.73 8.54 -19.43 -0.17 -4.90 16 18 C 0.20 3.13 6.62 -39.24 -0.26 2.87 16 19 C -0.26 -3.46 8.64 -39.36 -0.34 -3.80 16 20 C 0.17 2.07 7.30 -39.45 -0.29 1.79 16 21 F -0.13 -1.61 17.27 2.25 0.04 -1.57 16 22 C -0.24 -2.90 10.00 -39.42 -0.39 -3.29 16 23 C 0.17 2.25 7.30 -39.45 -0.29 1.96 16 24 F -0.13 -1.71 17.27 2.25 0.04 -1.67 16 25 C -0.20 -2.97 9.96 -39.36 -0.39 -3.36 16 26 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.39 10.30 7.02 -40.82 -0.29 10.01 16 28 H 0.08 1.53 7.92 -51.92 -0.41 1.11 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.06 0.75 7.19 -51.93 -0.37 0.37 16 33 H 0.08 1.31 8.14 -51.92 -0.42 0.88 16 34 H 0.15 1.72 5.26 -52.49 -0.28 1.45 16 35 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.15 2.38 8.06 -52.49 -0.42 1.95 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -29.15 309.49 -7.16 -36.30 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.19 Total: 7.80 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -3.00 Total: -13.20 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.48 Total: -44.57 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.17 Total: -4.90 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.15 -7.16 -36.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285528964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.641 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds