Wall clock time and date at job start Tue Mar 31 2020 05:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99938 * 2 1 4 4 H 1.48498 * 109.47067 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46794 * 299.99879 * 3 2 1 6 6 H 1.48498 * 109.47194 * 59.99661 * 3 2 1 7 7 C 1.37873 * 120.00406 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00516 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99571 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47238 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47217 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.46959 * 174.73922 * 11 10 9 13 13 C 1.48561 * 110.99991 * 174.68556 * 12 11 10 14 14 C 1.54379 * 104.59516 * 200.96450 * 13 12 11 15 15 C 1.54257 * 105.06190 * 23.85125 * 14 13 12 16 16 H 1.08998 * 110.32426 * 241.00556 * 15 14 13 17 17 N 1.46501 * 110.32655 * 118.89979 * 15 14 13 18 18 C 1.35041 * 126.03093 * 326.45185 * 17 15 14 19 19 C 1.35376 * 107.72428 * 179.97438 * 18 17 15 20 20 Cl 1.73603 * 126.04489 * 180.02562 * 19 18 17 21 21 C 1.39929 * 107.90947 * 359.97438 * 19 18 17 22 22 N 1.30849 * 108.21151 * 0.02562 * 21 19 18 23 23 C 1.48559 * 110.99659 * 59.26960 * 12 11 10 24 24 H 0.96998 * 120.00302 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47203 * 59.99896 * 9 7 2 26 26 H 1.08999 * 109.47478 * 299.99668 * 9 7 2 27 27 H 1.08998 * 109.47096 * 59.99845 * 10 9 7 28 28 H 1.09001 * 109.47081 * 299.99935 * 10 9 7 29 29 H 1.08996 * 109.47220 * 54.74723 * 11 10 9 30 30 H 1.08992 * 109.47197 * 294.74150 * 11 10 9 31 31 H 1.08994 * 110.41164 * 82.18257 * 13 12 11 32 32 H 1.09008 * 110.50910 * 319.78733 * 13 12 11 33 33 H 1.08999 * 110.32043 * 264.95473 * 14 13 12 34 34 H 1.09001 * 110.32580 * 142.74882 * 14 13 12 35 35 H 1.07998 * 126.14477 * 359.97438 * 18 17 15 36 36 H 1.07995 * 125.89275 * 180.02562 * 21 19 18 37 37 H 1.08994 * 110.41781 * 40.25802 * 23 12 11 38 38 H 1.09006 * 110.41185 * 277.81504 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9870 -0.0001 12 7 2.4299 -6.1007 -0.1271 13 6 1.7363 -7.4086 -0.0036 14 6 2.8503 -8.4047 0.3835 15 6 3.9489 -7.5427 1.0390 16 1 4.8773 -7.6182 0.4730 17 7 4.1642 -7.9612 2.4263 18 6 3.2205 -8.4330 3.2692 19 6 3.8224 -8.7054 4.4508 20 17 3.0475 -9.3361 5.8705 21 6 5.1798 -8.3898 4.3251 22 7 5.3853 -7.9436 3.1124 23 6 3.4061 -6.0981 0.9927 24 1 -0.4850 0.8400 -0.0004 25 1 0.6247 -2.5570 -0.8896 26 1 0.6241 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.7852 -5.0049 -0.8395 30 1 0.9258 -5.0869 0.9329 31 1 1.2869 -7.6919 -0.9553 32 1 0.9766 -7.3658 0.7769 33 1 3.2391 -8.9019 -0.5051 34 1 2.4712 -9.1393 1.0940 35 1 2.1735 -8.5688 3.0417 36 1 5.9286 -8.4961 5.0961 37 1 2.9089 -5.8487 1.9300 38 1 4.2141 -5.3947 0.7911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290095088.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:30 Heat of formation + Delta-G solvation = 68.766187 kcal Electronic energy + Delta-G solvation = -19533.967656 eV Core-core repulsion = 16438.732531 eV Total energy + Delta-G solvation = -3095.235125 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66785 -39.03258 -36.61653 -34.81541 -33.16679 -31.63723 -30.34741 -29.67554 -28.37356 -26.18539 -23.55041 -22.58324 -21.50096 -21.22552 -20.45649 -19.62500 -17.81956 -16.41006 -16.13251 -15.58153 -15.15286 -14.83657 -14.48155 -14.38355 -14.12090 -13.85847 -13.50041 -12.83178 -12.69895 -12.32707 -12.30802 -11.77995 -11.66110 -11.60771 -11.53114 -11.32422 -11.19573 -10.86975 -10.73167 -10.55890 -10.48689 -9.81076 -9.72477 -9.39080 -9.08061 -8.67347 -8.49529 -8.36754 -6.01784 -4.03984 1.46559 1.69580 2.33967 2.51205 3.30356 3.37860 3.42361 4.01596 4.05390 4.25960 4.42278 4.45728 4.60896 4.64141 4.91569 5.00089 5.24065 5.30556 5.34315 5.36762 5.46874 5.55082 5.59575 5.69084 5.81069 5.83649 6.09954 6.18311 6.48449 6.55132 6.66606 6.83194 7.08935 7.14739 7.29436 7.64787 7.78360 7.97898 8.40929 9.03181 9.60397 11.09682 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019657 B = 0.003173 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.122976 B = 8823.309796 C = 9372.126116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C 0.046 3.954 12 N -0.505 5.505 13 C 0.028 3.972 14 C -0.135 4.135 15 C 0.155 3.845 16 H 0.119 0.881 17 N -0.352 5.352 18 C 0.075 3.925 19 C -0.190 4.190 20 Cl -0.046 7.046 21 C 0.061 3.939 22 N -0.278 5.278 23 C 0.026 3.974 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.013 0.987 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.179 0.821 36 H 0.191 0.809 37 H 0.054 0.946 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 -21.671 5.855 23.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.082 4.082 12 N -0.229 5.229 13 C -0.100 4.100 14 C -0.173 4.173 15 C 0.053 3.947 16 H 0.136 0.864 17 N -0.134 5.134 18 C -0.073 4.073 19 C -0.229 4.229 20 Cl -0.018 7.018 21 C -0.125 4.125 22 N -0.099 5.099 23 C -0.103 4.103 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.197 0.803 36 H 0.208 0.792 37 H 0.072 0.928 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.597 -21.031 4.460 22.488 hybrid contribution -0.795 0.587 1.586 1.869 sum 5.802 -20.444 6.046 22.095 Atomic orbital electron populations 1.69969 1.06064 1.26505 1.51020 1.25026 0.94851 0.99296 0.95319 0.86543 0.80164 0.83774 0.77587 1.19705 1.20970 1.21020 1.21270 0.93079 0.91006 1.50370 0.92637 1.19069 0.93963 0.91357 0.97140 1.21680 0.99295 0.92773 1.00803 1.22511 0.94258 0.91045 1.00347 1.65568 1.14769 1.02088 1.40481 1.23166 0.95343 0.89826 1.01686 1.22797 0.95190 0.97804 1.01552 1.22255 1.01378 0.95039 0.76031 0.86352 1.48745 1.05237 1.48283 1.11105 1.22129 0.96680 0.98801 0.89713 1.20749 0.93788 1.17336 0.90994 1.98326 1.80547 1.85808 1.37122 1.23878 0.95040 0.98340 0.95268 1.77521 1.03611 1.22840 1.05906 1.23522 0.97742 0.94517 0.94511 0.93057 0.96486 0.96836 0.93625 0.92321 0.90380 0.94962 0.89246 0.93496 0.88896 0.90164 0.80345 0.79240 0.92778 0.88370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.75 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.18 4.86 -26.73 -0.13 -2.31 16 11 C 0.05 0.75 4.93 -3.82 -0.02 0.73 16 12 N -0.50 -6.78 5.45 -229.97 -1.25 -8.04 16 13 C 0.03 0.28 6.49 -2.18 -0.01 0.27 16 14 C -0.13 -1.11 6.50 -25.35 -0.16 -1.27 16 15 C 0.15 1.60 4.16 -66.55 -0.28 1.33 16 16 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 17 N -0.35 -3.95 3.55 -53.48 -0.19 -4.14 16 18 C 0.07 0.76 10.17 -17.16 -0.17 0.59 16 19 C -0.19 -1.99 6.65 -39.97 -0.27 -2.26 16 20 Cl -0.05 -0.44 29.30 -51.86 -1.52 -1.96 16 21 C 0.06 0.65 12.02 -17.34 -0.21 0.44 16 22 N -0.28 -3.47 12.57 30.64 0.39 -3.09 16 23 C 0.03 0.34 5.05 -2.18 -0.01 0.33 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.92 7.21 -51.93 -0.37 0.55 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.03 0.53 7.97 -51.93 -0.41 0.11 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.46 7.90 -51.92 -0.41 0.05 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.57 6.33 -51.93 -0.33 0.24 16 35 H 0.18 1.42 7.41 -52.49 -0.39 1.03 16 36 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.05 0.76 7.89 -51.93 -0.41 0.35 16 38 H 0.10 1.36 7.78 -51.93 -0.40 0.96 16 LS Contribution 328.98 15.07 4.96 4.96 Total: -1.00 -31.18 328.98 -9.37 -40.56 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -5.65 Total: -3.51 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.81 Total: -15.28 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.32 Total: -41.51 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.52 Total: -1.96 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.18 -9.37 -40.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290095088.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.321 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds