Wall clock time and date at job start Tue Mar 31 2020 05:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99741 * 2 1 4 4 H 1.48503 * 109.47240 * 270.00023 * 3 2 1 5 5 H 1.48491 * 109.47244 * 30.00201 * 3 2 1 6 6 H 1.48500 * 109.46962 * 150.00194 * 3 2 1 7 7 C 1.37877 * 120.00028 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99942 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46901 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47227 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99947 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00262 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99840 * 4.12303 * 13 11 10 15 15 C 1.53007 * 109.46972 * 269.99958 * 14 13 11 16 16 F 1.39901 * 109.46933 * 300.00039 * 15 14 13 17 17 F 1.39893 * 109.46917 * 59.99723 * 15 14 13 18 18 C 1.39929 * 120.00120 * 184.11937 * 13 11 10 19 19 C 1.38878 * 120.06701 * 55.60891 * 18 13 11 20 20 C 1.38111 * 119.92665 * 179.97438 * 19 18 13 21 21 C 1.38282 * 120.07008 * 359.97253 * 20 19 18 22 22 C 1.38284 * 120.14458 * 0.04576 * 21 20 19 23 23 C 1.38112 * 120.06964 * 359.95658 * 22 21 20 24 24 H 0.97001 * 120.00509 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47063 * 60.00102 * 9 7 2 26 26 H 1.09000 * 109.46903 * 299.99939 * 9 7 2 27 27 H 1.08999 * 109.47452 * 59.99543 * 10 9 7 28 28 H 1.09000 * 109.47375 * 299.99751 * 10 9 7 29 29 H 1.09000 * 109.47254 * 29.99969 * 14 13 11 30 30 H 1.09002 * 109.47294 * 150.00215 * 14 13 11 31 31 H 1.09000 * 109.46883 * 180.02562 * 15 14 13 32 32 H 1.08001 * 120.03527 * 359.70020 * 19 18 13 33 33 H 1.08003 * 119.96420 * 179.97438 * 20 19 18 34 34 H 1.08000 * 119.92704 * 180.02562 * 21 20 19 35 35 H 1.07995 * 119.96507 * 179.97438 * 22 21 20 36 36 H 1.07996 * 120.03808 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 6 1.4919 -4.9671 -0.0045 12 8 0.2790 -4.9672 -0.0045 13 7 2.1658 -6.1343 -0.0052 14 6 3.6279 -6.1360 0.0871 15 6 4.2277 -6.0833 -1.3195 16 9 3.8051 -7.2000 -2.0487 17 9 3.8024 -4.9170 -1.9644 18 6 1.4689 -7.3445 -0.0939 19 6 0.5977 -7.5698 -1.1517 20 6 -0.0882 -8.7655 -1.2367 21 6 0.0922 -9.7380 -0.2703 22 6 0.9587 -9.5166 0.7844 23 6 1.6476 -8.3230 0.8752 24 1 -0.4851 0.8400 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6240 -2.5574 0.8880 27 1 2.8720 -3.6051 0.8872 28 1 2.8719 -3.6035 -0.8927 29 1 3.9571 -5.2660 0.6553 30 1 3.9592 -7.0448 0.5896 31 1 5.3155 -6.0850 -1.2508 32 1 0.4533 -6.8090 -1.9046 33 1 -0.7662 -8.9412 -2.0588 34 1 -0.4450 -10.6724 -0.3393 35 1 1.0972 -10.2780 1.5377 36 1 2.3239 -8.1505 1.6993 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291547507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:39 Heat of formation + Delta-G solvation = -111.282623 kcal Electronic energy + Delta-G solvation = -22458.531006 eV Core-core repulsion = 18771.398948 eV Total energy + Delta-G solvation = -3687.132058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.95427 -46.96773 -40.33219 -38.26604 -35.59648 -33.51830 -31.40949 -30.92315 -30.41712 -28.67616 -25.81211 -23.70174 -23.00157 -22.28342 -21.06705 -18.95931 -17.93187 -17.51304 -17.13524 -17.01777 -16.37999 -15.91310 -15.49600 -15.03281 -14.49711 -14.37894 -14.26948 -13.75055 -13.42844 -13.36563 -13.17850 -12.82724 -12.63471 -12.53779 -12.28145 -12.18073 -11.58298 -11.46261 -11.13311 -11.10881 -10.90080 -10.59871 -9.90423 -9.68943 -9.56399 -9.24248 -9.05856 -8.90106 -8.32329 -8.14702 -5.95645 -4.00100 1.31005 1.43406 2.88065 3.01513 3.33784 3.39757 3.41986 3.70755 3.82150 4.14350 4.30802 4.46844 4.66901 4.90258 4.94994 5.06581 5.15943 5.16982 5.30577 5.39448 5.42239 5.60234 5.60750 6.02132 6.12232 6.28718 6.34232 6.46752 6.52494 6.64654 6.85046 7.13669 7.44758 7.73908 7.84923 8.06413 8.36474 8.57492 9.07619 9.63349 11.15400 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.023459 B = 0.004568 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.290981 B = 6127.854256 C = 6829.185331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.038 3.962 10 C -0.141 4.141 11 C 0.515 3.485 12 O -0.508 6.508 13 N -0.582 5.582 14 C 0.062 3.938 15 C 0.241 3.759 16 F -0.202 7.202 17 F -0.191 7.191 18 C 0.156 3.844 19 C -0.102 4.102 20 C -0.106 4.106 21 C -0.132 4.132 22 C -0.110 4.110 23 C -0.135 4.135 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.022 0.978 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.310 -19.472 0.050 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.001 3.999 10 C -0.181 4.181 11 C 0.307 3.693 12 O -0.380 6.380 13 N -0.313 5.313 14 C -0.062 4.062 15 C 0.186 3.814 16 F -0.184 7.184 17 F -0.172 7.172 18 C 0.065 3.935 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.150 4.150 22 C -0.129 4.129 23 C -0.155 4.155 24 H 0.071 0.929 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.138 0.862 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.447 -19.262 0.033 21.033 hybrid contribution 0.459 0.922 -0.102 1.035 sum 8.906 -18.341 -0.069 20.389 Atomic orbital electron populations 1.69997 1.06073 1.26593 1.50165 1.25019 0.94809 0.99214 0.95293 0.86589 0.79743 0.83515 0.78088 1.20650 1.21245 1.19882 1.21179 0.92902 0.90869 1.51413 0.92565 1.18901 0.93114 0.89355 0.98557 1.22228 1.01308 0.91072 1.03483 1.21911 0.88652 0.84957 0.73775 1.90706 1.14208 1.86732 1.46315 1.45800 1.05482 1.05013 1.74972 1.22852 0.81208 1.06961 0.95223 1.22562 0.99009 0.71758 0.88093 1.92999 1.92406 1.53070 1.79883 1.92984 1.92067 1.48563 1.83575 1.17684 0.95560 0.86152 0.94127 1.21182 0.96954 0.97221 0.96871 1.21022 0.99084 0.93212 0.99135 1.21104 0.99304 0.99360 0.95253 1.20921 0.96867 0.96723 0.98341 1.21057 1.02180 0.94518 0.97767 0.92944 0.95824 0.95945 0.90308 0.88026 0.86214 0.87357 0.86391 0.85928 0.85832 0.86133 0.85935 0.86010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.56 13.29 55.43 0.74 -26.82 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 10 C -0.14 -2.90 4.19 -27.89 -0.12 -3.02 16 11 C 0.52 10.33 7.17 -10.99 -0.08 10.25 16 12 O -0.51 -12.35 15.23 5.55 0.08 -12.27 16 13 N -0.58 -8.96 2.52 -113.45 -0.29 -9.24 16 14 C 0.06 0.64 5.52 -4.04 -0.02 0.62 16 15 C 0.24 2.51 5.60 37.16 0.21 2.72 16 16 F -0.20 -2.57 16.83 2.25 0.04 -2.53 16 17 F -0.19 -2.77 14.06 2.25 0.03 -2.74 16 18 C 0.16 2.37 4.76 -83.69 -0.40 1.97 16 19 C -0.10 -1.61 8.89 -39.39 -0.35 -1.96 16 20 C -0.11 -1.37 10.04 -39.61 -0.40 -1.76 16 21 C -0.13 -1.47 10.04 -39.55 -0.40 -1.87 16 22 C -0.11 -1.20 10.04 -39.61 -0.40 -1.60 16 23 C -0.14 -1.68 9.30 -39.39 -0.37 -2.05 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.08 1.42 7.27 -51.93 -0.38 1.04 16 28 H 0.10 1.98 5.22 -51.93 -0.27 1.71 16 29 H 0.12 1.07 6.47 -51.93 -0.34 0.73 16 30 H 0.11 0.78 7.27 -51.93 -0.38 0.40 16 31 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.12 2.12 7.97 -52.49 -0.42 1.70 16 33 H 0.12 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.12 1.24 7.76 -52.49 -0.41 0.83 16 LS Contribution 313.69 15.07 4.73 4.73 Total: -1.00 -36.05 313.69 -6.80 -42.85 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.26 Total: -1.22 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.85 Total: -9.40 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.45 Total: -36.06 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.07 Total: -5.27 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -36.05 -6.80 -42.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291547507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.432 kcal (2) G-P(sol) polarization free energy of solvation -36.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds