Wall clock time and date at job start Tue Mar 31 2020 06:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50696 * 120.00596 * 2 1 4 4 N 1.46901 * 109.47091 * 124.55928 * 3 2 1 5 5 C 1.46900 * 110.99748 * 164.23701 * 4 3 2 6 6 C 1.50700 * 109.47122 * 293.95063 * 5 4 3 7 7 H 1.08000 * 119.99804 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00021 * 180.02562 * 6 5 4 9 9 N 1.31520 * 119.99847 * 180.02562 * 8 6 5 10 10 Si 1.86790 * 120.00151 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.47392 * 90.00010 * 10 8 6 12 12 H 1.48499 * 109.47367 * 209.99935 * 10 8 6 13 13 H 1.48504 * 109.47279 * 330.00334 * 10 8 6 14 14 C 1.46902 * 110.99790 * 288.18634 * 4 3 2 15 15 C 1.50697 * 109.46794 * 160.40279 * 14 4 3 16 16 C 1.39867 * 126.05488 * 276.21178 * 15 14 4 17 17 C 1.50694 * 125.88425 * 0.02562 * 16 15 14 18 18 N 1.30830 * 108.22068 * 179.82083 * 16 15 14 19 19 N 1.40078 * 108.23850 * 0.43666 * 18 16 15 20 20 C 1.46503 * 126.03843 * 179.75319 * 19 18 16 21 21 C 1.34987 * 107.92874 * 359.71938 * 19 18 16 22 22 Cl 1.73595 * 126.14238 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99485 * 5.11542 * 1 2 3 24 24 H 1.07996 * 120.00890 * 185.11185 * 1 2 3 25 25 H 1.08003 * 119.99629 * 179.97438 * 2 1 3 26 26 H 1.08998 * 109.46781 * 4.56054 * 3 2 1 27 27 H 1.09002 * 109.47291 * 244.55913 * 3 2 1 28 28 H 1.09002 * 109.47318 * 53.94917 * 5 4 3 29 29 H 1.08997 * 109.47316 * 173.95438 * 5 4 3 30 30 H 0.96999 * 120.00118 * 180.02562 * 9 8 6 31 31 H 1.09005 * 109.46978 * 280.40455 * 14 4 3 32 32 H 1.08998 * 109.47334 * 40.40392 * 14 4 3 33 33 H 1.09010 * 109.47032 * 84.75793 * 17 16 15 34 34 H 1.08997 * 109.47366 * 204.75443 * 17 16 15 35 35 H 1.08997 * 109.47741 * 324.76260 * 17 16 15 36 36 H 1.09002 * 109.47315 * 269.96143 * 20 19 18 37 37 H 1.08999 * 109.46476 * 29.96252 * 20 19 18 38 38 H 1.09000 * 109.47248 * 149.95974 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9888 1.3361 1.1406 5 6 3.9922 2.3963 0.9756 6 6 4.8801 2.0694 -0.1974 7 1 4.7151 1.1649 -0.7639 8 6 5.9030 2.9252 -0.5472 9 7 6.6775 2.6402 -1.5713 10 14 6.1878 4.4900 0.4322 11 1 7.1331 4.2133 1.5435 12 1 6.7603 5.5330 -0.4565 13 1 4.8964 4.9679 0.9883 14 6 2.2594 1.4939 2.4059 15 6 3.1348 1.0494 3.5491 16 6 3.3025 -0.2659 3.9944 17 6 2.6380 -1.4869 3.4126 18 7 4.1390 -0.2537 5.0003 19 7 4.5237 1.0727 5.2345 20 6 5.4469 1.5313 6.2756 21 6 3.8943 1.8536 4.3312 22 17 4.0325 3.5788 4.1964 23 1 -0.5399 0.9317 -0.0834 24 1 -0.5401 -0.9315 0.0833 25 1 1.8499 -0.9354 0.0004 26 1 1.3581 2.1319 0.0817 27 1 2.6276 1.3989 -0.9280 28 1 3.4902 3.3472 0.7974 29 1 4.5967 2.4683 1.8798 30 1 7.3973 3.2420 -1.8172 31 1 1.9889 2.5412 2.5412 32 1 1.3554 0.8854 2.3826 33 1 3.2184 -1.8462 2.5627 34 1 2.5837 -2.2674 4.1715 35 1 1.6314 -1.2303 3.0826 36 1 4.8872 1.7598 7.1826 37 1 6.1754 0.7483 6.4857 38 1 5.9649 2.4271 5.9329 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292284910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:46 Heat of formation + Delta-G solvation = 100.704909 kcal Electronic energy + Delta-G solvation = -20701.591038 eV Core-core repulsion = 17607.740880 eV Total energy + Delta-G solvation = -3093.850158 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.14560 -37.21493 -36.68939 -33.95647 -33.18687 -32.26454 -30.42590 -29.47427 -27.77275 -26.45276 -24.74453 -23.27427 -20.70955 -20.50946 -19.36909 -19.15506 -16.92863 -16.66712 -15.76030 -15.01033 -14.94943 -14.34494 -14.31283 -13.65402 -13.57068 -13.27876 -13.06003 -12.69400 -12.54198 -12.47891 -12.25396 -12.12166 -11.97546 -11.54061 -11.39371 -11.17444 -10.98375 -10.83253 -10.46418 -10.33144 -10.15003 -9.83647 -9.31680 -8.91454 -8.90349 -8.52416 -8.14139 -7.32769 -6.02578 -3.98332 1.64565 1.84699 2.64438 2.78590 2.88178 3.28341 3.35568 3.38453 4.44322 4.49853 4.99850 5.09737 5.11260 5.30124 5.31437 5.35894 5.36858 5.47667 5.61697 5.76484 5.86370 6.01222 6.05478 6.09171 6.14419 6.27133 6.42177 6.55382 6.78343 6.87310 6.90988 6.99441 7.03456 7.20293 7.67328 7.77521 7.95904 8.11417 8.69765 9.06803 9.60378 11.10672 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011366 B = 0.008912 C = 0.005923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2462.975288 B = 3140.974320 C = 4725.903697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.117 4.117 3 C 0.080 3.920 4 N -0.516 5.516 5 C 0.163 3.837 6 C -0.505 4.505 7 H 0.082 0.918 8 C 0.070 3.930 9 N -0.901 5.901 10 Si 0.864 3.136 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.264 1.264 14 C 0.125 3.875 15 C -0.181 4.181 16 C 0.103 3.897 17 C -0.067 4.067 18 N -0.283 5.283 19 N -0.373 5.373 20 C 0.101 3.899 21 C 0.126 3.874 22 Cl -0.009 7.009 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.110 0.890 26 H 0.025 0.975 27 H 0.101 0.899 28 H -0.014 1.014 29 H 0.029 0.971 30 H 0.262 0.738 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 -2.426 13.155 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.135 4.135 3 C -0.047 4.047 4 N -0.240 5.240 5 C 0.037 3.963 6 C -0.544 4.544 7 H 0.100 0.900 8 C -0.131 4.131 9 N -0.541 5.541 10 Si 0.691 3.309 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.189 1.189 14 C -0.004 4.004 15 C -0.194 4.194 16 C -0.063 4.063 17 C -0.125 4.125 18 N -0.107 5.107 19 N -0.158 5.158 20 C -0.041 4.041 21 C -0.027 4.027 22 Cl 0.019 6.981 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.128 0.872 26 H 0.043 0.957 27 H 0.119 0.881 28 H 0.004 0.996 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.771 -3.259 14.033 16.369 hybrid contribution -0.201 2.504 -0.058 2.513 sum -7.972 -0.755 13.975 16.107 Atomic orbital electron populations 1.23699 0.95981 1.01142 1.05136 1.23130 0.95195 0.99533 0.95672 1.21201 0.94046 0.92692 0.96780 1.61861 1.13632 1.49475 0.99006 1.20211 0.90545 0.87595 0.97943 1.21070 1.12686 1.08545 1.12050 0.90046 1.24848 0.95775 0.97567 0.94916 1.69891 1.19257 1.37609 1.27297 0.87013 0.79083 0.84239 0.80565 1.20186 1.21278 1.18892 1.20336 0.94003 0.98383 0.87664 1.19529 1.06653 0.91607 1.01599 1.22042 0.95514 0.95366 0.93360 1.20158 0.99988 0.91933 1.00458 1.77394 1.18387 0.94350 1.20597 1.48329 1.36882 1.04058 1.26494 1.21860 0.92198 1.01285 0.88724 1.21440 1.00072 0.85185 0.96009 1.98400 1.97043 1.05644 1.96992 0.89261 0.89061 0.87152 0.95653 0.88124 0.99613 0.95263 0.92787 0.94800 0.90465 0.89604 0.91445 0.90369 0.90732 0.88871 0.89576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.85 14.31 29.02 0.42 -2.43 16 2 C -0.12 -1.77 8.74 -36.03 -0.32 -2.09 16 3 C 0.08 1.49 5.25 -4.98 -0.03 1.46 16 4 N -0.52 -10.56 4.36 -238.96 -1.04 -11.61 16 5 C 0.16 3.94 3.61 -4.98 -0.02 3.93 16 6 C -0.51 -14.30 8.84 -34.44 -0.30 -14.61 16 7 H 0.08 2.49 7.50 -52.49 -0.39 2.10 16 8 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 9 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 10 Si 0.86 21.79 27.47 -169.99 -4.67 17.12 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 14 C 0.13 2.19 4.97 -4.98 -0.02 2.17 16 15 C -0.18 -3.22 5.13 -105.00 -0.54 -3.76 16 16 C 0.10 1.72 7.22 -82.41 -0.59 1.13 16 17 C -0.07 -0.87 10.22 36.00 0.37 -0.50 16 18 N -0.28 -4.85 12.57 33.67 0.42 -4.42 16 19 N -0.37 -6.00 4.01 -64.90 -0.26 -6.26 16 20 C 0.10 1.14 11.31 59.85 0.68 1.81 16 21 C 0.13 2.20 6.77 -17.15 -0.12 2.08 16 22 Cl -0.01 -0.15 27.03 -51.86 -1.40 -1.55 16 23 H 0.09 1.11 7.86 -52.48 -0.41 0.70 16 24 H 0.09 1.00 8.06 -52.49 -0.42 0.58 16 25 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 26 H 0.03 0.45 7.71 -51.93 -0.40 0.05 16 27 H 0.10 2.14 6.59 -51.93 -0.34 1.80 16 28 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 29 H 0.03 0.73 5.04 -51.93 -0.26 0.46 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.03 0.60 7.58 -51.93 -0.39 0.21 16 32 H 0.08 1.19 6.54 -51.93 -0.34 0.85 16 33 H 0.09 1.16 8.14 -51.92 -0.42 0.74 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.91 7.56 -51.93 -0.39 0.51 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.91 7.81 -51.93 -0.41 0.50 16 LS Contribution 330.37 15.07 4.98 4.98 Total: -1.00 -32.28 330.37 -7.19 -39.47 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.42 Total: -1.87 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -0.58 Total: -8.87 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.11 Total: -49.28 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.40 Total: -1.55 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.28 -7.19 -39.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292284910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.174 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds