Wall clock time and date at job start Tue Mar 31 2020 06:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39905 * 109.47157 * 2 1 4 4 F 1.39900 * 109.47010 * 119.99609 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99756 * 2 1 3 6 6 C 1.38356 * 119.85557 * 269.72925 * 5 2 1 7 7 C 1.37960 * 120.14369 * 179.72062 * 6 5 2 8 8 C 1.39577 * 119.85443 * 0.54931 * 7 6 5 9 9 C 1.47841 * 120.14239 * 179.70527 * 8 7 6 10 10 O 1.21556 * 119.99579 * 180.02562 * 9 8 7 11 11 N 1.34774 * 120.00445 * 0.02562 * 9 8 7 12 12 C 1.46503 * 120.00293 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47190 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.46860 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00386 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00001 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99819 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00499 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47013 * 59.99658 * 18 16 14 20 20 H 1.48492 * 109.47411 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46840 * 300.00047 * 18 16 14 22 22 C 1.39580 * 119.70869 * 359.72289 * 8 7 6 23 23 C 1.37954 * 119.85419 * 0.02562 * 22 8 7 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00208 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00190 * 1 2 3 27 27 H 1.08004 * 119.92358 * 359.97438 * 6 5 2 28 28 H 1.08004 * 120.06803 * 180.25007 * 7 6 5 29 29 H 0.97001 * 119.99753 * 0.02562 * 11 9 8 30 30 H 1.09002 * 109.46925 * 300.00133 * 12 11 9 31 31 H 1.08996 * 109.46809 * 59.99892 * 12 11 9 32 32 H 1.09003 * 109.46794 * 299.99803 * 13 12 11 33 33 H 1.09002 * 109.47261 * 59.99517 * 13 12 11 34 34 H 0.97000 * 120.00384 * 180.02562 * 17 16 14 35 35 H 1.07998 * 120.07192 * 179.97438 * 22 8 7 36 36 H 1.07994 * 119.93054 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 1.1423 5 6 2.0324 -0.7104 -1.2304 6 6 2.2674 -2.0733 -1.1911 7 6 2.7218 -2.7307 -2.3156 8 6 2.9555 -2.0159 -3.4914 9 6 3.4488 -2.7128 -4.6984 10 8 3.6518 -2.0876 -5.7208 11 7 3.6733 -4.0413 -4.6650 12 6 4.1626 -4.7318 -5.8609 13 6 4.3329 -6.2214 -5.5559 14 6 4.8368 -6.9315 -6.7859 15 1 5.0172 -6.3760 -7.6943 16 6 5.0666 -8.2905 -6.7517 17 7 4.8465 -8.9671 -5.6456 18 14 5.6906 -9.1710 -8.2765 19 1 6.9991 -8.5959 -8.6795 20 1 5.8559 -10.6167 -7.9805 21 1 4.7133 -9.0001 -9.3815 22 6 2.7218 -0.6401 -3.5226 23 6 2.2624 0.0042 -2.3926 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 2.0907 -2.6244 -0.2792 28 1 2.9010 -3.7953 -2.2847 29 1 3.5109 -4.5403 -3.8492 30 1 3.4453 -4.6062 -6.6720 31 1 5.1231 -4.3097 -6.1566 32 1 5.0504 -6.3465 -4.7450 33 1 3.3726 -6.6437 -5.2598 34 1 5.0085 -9.9231 -5.6214 35 1 2.9011 -0.0812 -4.4292 36 1 2.0816 1.0687 -2.4153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293019619.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:21 Heat of formation + Delta-G solvation = -126.509790 kcal Electronic energy + Delta-G solvation = -20980.267319 eV Core-core repulsion = 17292.474961 eV Total energy + Delta-G solvation = -3687.792358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.34685 -47.35448 -40.16782 -38.41431 -35.01357 -33.44962 -32.85721 -31.32328 -30.43920 -29.28046 -25.58923 -24.33801 -22.93724 -22.13614 -21.05444 -20.21215 -18.38135 -17.76128 -17.32122 -16.67181 -16.45882 -15.64107 -15.08615 -15.03029 -14.61517 -14.54452 -14.17475 -14.02165 -13.86859 -13.70172 -13.48957 -13.28379 -12.99073 -12.92208 -12.60168 -12.42318 -12.31818 -11.44694 -11.29388 -11.23253 -11.05455 -10.69428 -10.38762 -9.95762 -9.56289 -9.31894 -9.29506 -9.27239 -8.61182 -8.40949 -6.12693 -4.15871 0.46968 1.05831 2.77979 3.26313 3.29242 3.33194 3.35451 3.50339 3.67775 3.72399 4.03589 4.29584 4.38834 4.56781 4.63196 4.83605 5.00592 5.04182 5.04845 5.24421 5.31860 5.38970 5.41647 5.67788 5.92314 6.00895 6.08835 6.27920 6.29433 6.49468 6.66369 6.78892 7.45759 7.55798 7.84363 7.87834 8.22545 8.48768 8.89645 9.49182 10.98871 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.037806 B = 0.002747 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.452929 B =10191.301251 C =10741.092848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.337 3.663 3 F -0.195 7.195 4 F -0.194 7.194 5 C -0.141 4.141 6 C -0.094 4.094 7 C -0.087 4.087 8 C -0.107 4.107 9 C 0.545 3.455 10 O -0.543 6.543 11 N -0.713 5.713 12 C 0.120 3.880 13 C 0.012 3.988 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.064 4.064 23 C -0.096 4.096 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.397 0.603 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.263 0.737 35 H 0.143 0.857 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 16.914 13.181 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.300 3.700 3 F -0.176 7.176 4 F -0.175 7.175 5 C -0.143 4.143 6 C -0.112 4.112 7 C -0.106 4.106 8 C -0.110 4.110 9 C 0.331 3.669 10 O -0.422 6.422 11 N -0.363 5.363 12 C -0.002 4.002 13 C -0.025 4.025 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.725 3.275 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.082 4.082 23 C -0.114 4.114 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.232 0.768 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.160 17.152 12.527 23.130 hybrid contribution 0.403 -0.821 -0.197 0.936 sum -8.756 16.330 12.330 22.257 Atomic orbital electron populations 1.22774 0.90440 1.05912 1.05511 1.19480 0.93755 0.75007 0.81725 1.93028 1.90654 1.37174 1.96717 1.93032 1.90643 1.80904 1.52924 1.20392 1.03702 0.95304 0.94856 1.20867 0.98304 0.92999 0.99011 1.21407 0.97028 1.00430 0.91704 1.20341 1.01408 0.94821 0.94413 1.18241 0.78542 0.82674 0.87472 1.90756 1.52625 1.66257 1.32570 1.46301 1.65798 1.07467 1.16743 1.21804 0.98235 0.94998 0.85117 1.19330 0.97755 0.87341 0.98077 1.21000 1.44850 0.93019 0.97339 0.92247 1.24994 0.95345 0.97553 0.96344 1.69940 1.48575 1.08189 1.26580 0.86558 0.79512 0.78389 0.83005 1.20086 1.21219 1.20085 1.21285 0.95185 0.93185 0.98583 1.20895 0.98556 1.00341 0.91625 0.88913 0.88975 0.89656 0.84502 0.84472 0.76768 0.92240 0.92248 0.95876 0.95881 0.92738 0.83882 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 9.37 37.16 0.35 -0.76 16 2 C 0.34 2.97 2.32 -27.89 -0.06 2.90 16 3 F -0.19 -1.95 16.19 2.25 0.04 -1.92 16 4 F -0.19 -1.96 16.19 2.25 0.04 -1.93 16 5 C -0.14 -1.38 5.00 -104.53 -0.52 -1.90 16 6 C -0.09 -0.91 9.38 -39.64 -0.37 -1.28 16 7 C -0.09 -0.96 9.54 -39.18 -0.37 -1.33 16 8 C -0.11 -1.42 5.87 -104.97 -0.62 -2.04 16 9 C 0.54 9.28 7.77 -12.33 -0.10 9.19 16 10 O -0.54 -11.07 16.35 5.32 0.09 -10.98 16 11 N -0.71 -12.25 5.51 -61.25 -0.34 -12.59 16 12 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 13 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 14 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 18 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 22 C -0.06 -0.76 9.60 -39.19 -0.38 -1.13 16 23 C -0.10 -0.95 9.38 -39.64 -0.37 -1.33 16 24 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.14 1.08 7.58 -52.48 -0.40 0.69 16 28 H 0.14 1.30 6.41 -52.48 -0.34 0.96 16 29 H 0.40 5.81 6.51 -40.82 -0.27 5.55 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.14 1.69 7.65 -52.49 -0.40 1.29 16 36 H 0.14 1.08 7.59 -52.49 -0.40 0.69 16 LS Contribution 320.67 15.07 4.83 4.83 Total: -1.00 -31.64 320.67 -6.95 -38.59 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.30 Total: 1.03 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: -3.02 Total: -8.12 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.40 Total: -37.66 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.07 Total: -3.85 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.64 -6.95 -38.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293019619.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.919 kcal (2) G-P(sol) polarization free energy of solvation -31.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds