Wall clock time and date at job start Tue Mar 31 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38285 * 119.93075 * 2 1 4 4 C 1.38108 * 120.06930 * 180.27712 * 3 2 1 5 5 C 1.38872 * 119.93244 * 359.46308 * 4 3 2 6 6 N 1.39918 * 120.07513 * 180.29716 * 5 4 3 7 7 C 1.46499 * 120.00412 * 175.73144 * 6 5 4 8 8 C 1.50708 * 109.46663 * 97.25170 * 7 6 5 9 9 H 1.08000 * 120.00053 * 0.02562 * 8 7 6 10 10 C 1.37878 * 119.99476 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99564 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00522 * 359.97438 * 10 8 7 13 13 H 1.48497 * 109.46969 * 89.99976 * 12 10 8 14 14 H 1.48492 * 109.47285 * 210.00593 * 12 10 8 15 15 H 1.48502 * 109.46738 * 330.00136 * 12 10 8 16 16 C 1.34782 * 120.00160 * 355.73762 * 6 5 4 17 17 O 1.21297 * 119.99602 * 358.89626 * 16 6 5 18 18 C 1.50696 * 120.00581 * 178.89393 * 16 6 5 19 19 C 1.52999 * 109.47042 * 277.70186 * 18 16 6 20 20 F 1.39903 * 109.46692 * 37.69653 * 18 16 6 21 21 F 1.39892 * 109.47337 * 157.69547 * 18 16 6 22 22 C 1.38873 * 119.85744 * 0.28080 * 5 4 3 23 23 C 1.38114 * 119.92924 * 359.97438 * 22 5 4 24 24 H 1.09003 * 109.47060 * 270.23642 * 1 2 3 25 25 H 1.09002 * 109.47070 * 30.23312 * 1 2 3 26 26 H 1.08998 * 109.47260 * 150.23425 * 1 2 3 27 27 H 1.07997 * 119.96428 * 0.04168 * 3 2 1 28 28 H 1.08000 * 120.03438 * 179.74063 * 4 3 2 29 29 H 1.09000 * 109.47609 * 217.24685 * 7 6 5 30 30 H 1.08994 * 109.46994 * 337.25462 * 7 6 5 31 31 H 0.96999 * 120.00336 * 179.97438 * 11 10 8 32 32 H 1.09000 * 109.47646 * 74.75549 * 19 18 16 33 33 H 1.09006 * 109.47195 * 194.75713 * 19 18 16 34 34 H 1.08997 * 109.47266 * 314.75159 * 19 18 16 35 35 H 1.07996 * 120.03729 * 180.02562 * 22 5 4 36 36 H 1.07997 * 119.97112 * 179.97438 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 0.0000 -0.0003 6 7 5.6731 -0.0001 0.0001 7 6 6.4056 -1.2648 0.1003 8 6 6.8125 -1.7201 -1.2776 9 1 6.5519 -1.1264 -2.1413 10 6 7.5174 -2.8945 -1.4353 11 7 7.8730 -3.2915 -2.6376 12 14 7.9688 -3.9209 0.0587 13 1 6.8854 -4.8987 0.3331 14 1 9.2366 -4.6477 -0.2047 15 1 8.1432 -3.0321 1.2355 16 6 6.3471 1.1635 -0.0915 17 8 5.7408 2.2090 -0.1945 18 6 7.8539 1.1657 -0.0659 19 6 8.3394 1.1000 1.3835 20 9 8.3337 0.0555 -0.7692 21 9 8.3288 2.3376 -0.6643 22 6 3.5781 -1.2018 0.0050 23 6 2.1969 -1.1984 0.0055 24 1 -0.3633 0.0042 1.0277 25 1 -0.3633 0.8879 -0.5175 26 1 -0.3634 -0.8920 -0.5102 27 1 1.6553 2.1327 0.0007 28 1 4.1163 2.1381 -0.0100 29 1 7.2955 -1.1218 0.7132 30 1 5.7664 -2.0196 0.5583 31 1 8.3692 -4.1175 -2.7487 32 1 8.2007 0.0895 1.7678 33 1 9.3966 1.3625 1.4248 34 1 7.7670 1.8014 1.9906 35 1 4.1163 -2.1381 0.0097 36 1 1.6551 -2.1326 0.0092 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293289317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:53 Heat of formation + Delta-G solvation = -78.417545 kcal Electronic energy + Delta-G solvation = -23130.525168 eV Core-core repulsion = 19444.818246 eV Total energy + Delta-G solvation = -3685.706922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -48.54912 -46.52684 -40.40112 -38.19256 -35.73178 -32.81855 -32.14929 -30.89355 -30.55478 -28.33965 -26.52350 -24.25530 -23.28545 -21.83941 -21.13748 -19.65846 -17.63939 -17.31047 -17.00750 -16.41535 -16.14494 -15.62334 -14.93944 -14.71137 -14.18930 -13.87946 -13.62917 -13.51874 -13.35377 -13.19144 -12.99760 -12.84352 -12.64320 -12.39765 -12.30139 -12.07542 -12.02894 -11.75281 -11.41001 -11.18180 -11.16404 -10.72970 -10.63577 -10.49100 -9.78959 -9.28484 -8.93376 -8.74920 -8.52021 -7.35005 -6.23974 -4.23246 1.55391 1.83457 2.63971 2.99060 3.12353 3.17052 3.23207 4.08347 4.21161 4.23210 4.26216 4.75651 4.91437 5.05589 5.17568 5.19764 5.42873 5.47783 5.53518 5.67661 5.70931 5.78754 5.82899 5.90233 5.98594 6.10169 6.24817 6.40742 6.50002 6.69875 6.77734 6.95229 7.02277 7.26382 7.55709 7.63428 8.16694 8.30659 8.79113 9.30699 10.88832 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014359 B = 0.007773 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.588782 B = 3601.335773 C = 5020.499215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.171 4.171 5 C 0.158 3.842 6 N -0.512 5.512 7 C 0.191 3.809 8 C -0.525 4.525 9 H 0.081 0.919 10 C 0.081 3.919 11 N -0.884 5.884 12 Si 0.866 3.134 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.488 3.512 17 O -0.510 6.510 18 C 0.277 3.723 19 C -0.195 4.195 20 F -0.139 7.139 21 F -0.184 7.184 22 C -0.138 4.138 23 C -0.101 4.101 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.118 0.882 28 H 0.178 0.822 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.267 0.733 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.102 5.098 9.316 12.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.190 4.190 5 C 0.064 3.936 6 N -0.231 5.231 7 C 0.071 3.929 8 C -0.563 4.563 9 H 0.099 0.901 10 C -0.123 4.123 11 N -0.522 5.522 12 Si 0.692 3.308 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.189 1.189 16 C 0.274 3.726 17 O -0.389 6.389 18 C 0.237 3.763 19 C -0.252 4.252 20 F -0.119 7.119 21 F -0.165 7.165 22 C -0.158 4.158 23 C -0.120 4.120 24 H 0.081 0.919 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.136 0.864 28 H 0.194 0.806 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.154 0.846 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.187 5.458 9.119 12.297 hybrid contribution 0.496 -0.874 0.386 1.076 sum -5.691 4.584 9.504 11.989 Atomic orbital electron populations 1.20685 0.91798 1.02190 1.01570 1.19843 0.95660 0.93442 1.03544 1.20919 0.93806 0.97029 1.00546 1.22659 0.94520 0.99928 1.01929 1.18022 0.81811 0.94633 0.99182 1.45576 1.04496 1.08512 1.64485 1.20433 0.92063 0.80239 1.00154 1.21092 1.36279 1.07898 0.91053 0.90124 1.24738 0.95026 0.96857 0.95646 1.69863 1.37991 1.22943 1.21361 0.87013 0.78970 0.81229 0.83550 1.19803 1.20564 1.18934 1.20977 0.89825 0.83976 0.77773 1.90348 1.67140 1.32205 1.49180 1.20727 0.90151 0.74026 0.91363 1.22861 1.04383 1.05978 0.92010 1.93470 1.89062 1.49372 1.80012 1.93030 1.88869 1.48779 1.85790 1.21039 0.94206 0.97306 1.03296 1.20749 0.93265 0.97308 1.00668 0.91902 0.92076 0.92008 0.86435 0.80593 0.93806 0.93755 0.92234 0.88460 0.88820 0.89402 0.84599 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.12 -1.83 5.88 -104.59 -0.62 -2.44 16 3 C -0.10 -1.65 9.69 -39.61 -0.38 -2.03 16 4 C -0.17 -3.18 9.04 -39.39 -0.36 -3.53 16 5 C 0.16 3.15 6.51 -83.70 -0.54 2.60 16 6 N -0.51 -10.67 2.70 -114.74 -0.31 -10.98 16 7 C 0.19 4.12 3.40 -5.19 -0.02 4.10 16 8 C -0.53 -13.68 7.19 -34.44 -0.25 -13.93 16 9 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 10 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 11 N -0.88 -25.54 13.96 55.43 0.77 -24.76 16 12 Si 0.87 19.22 27.47 -169.99 -4.67 14.55 16 13 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 15 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 16 C 0.49 10.04 6.67 -10.98 -0.07 9.96 16 17 O -0.51 -10.86 13.14 5.54 0.07 -10.78 16 18 C 0.28 5.26 2.05 -27.89 -0.06 5.20 16 19 C -0.19 -2.73 9.27 37.16 0.34 -2.38 16 20 F -0.14 -3.08 12.19 2.25 0.03 -3.06 16 21 F -0.18 -3.55 16.76 2.25 0.04 -3.52 16 22 C -0.14 -2.54 9.19 -39.39 -0.36 -2.90 16 23 C -0.10 -1.59 9.69 -39.61 -0.38 -1.97 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 28 H 0.18 3.44 4.53 -56.26 -0.25 3.19 16 29 H 0.04 0.90 3.88 -51.93 -0.20 0.70 16 30 H 0.04 0.91 5.42 -51.93 -0.28 0.63 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.10 1.32 6.41 -51.93 -0.33 0.99 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 35 H 0.14 2.54 6.11 -52.49 -0.32 2.21 16 36 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 300.37 15.07 4.53 4.53 Total: -1.00 -29.80 300.37 -5.91 -35.71 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -3.93 Total: 4.38 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.43 Total: -6.07 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.46 Total: -35.75 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 9 Polarization: -6.64 SS G_CDS: 0.07 Total: -6.57 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.67 Total: 14.55 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.80 -5.91 -35.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293289317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.708 kcal (2) G-P(sol) polarization free energy of solvation -29.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds