Wall clock time and date at job start Tue Mar 31 2020 06:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99885 * 2 1 4 4 N 1.46899 * 109.47536 * 123.82187 * 3 2 1 5 5 C 1.46906 * 110.99892 * 288.09725 * 4 3 2 6 6 C 1.50698 * 109.47193 * 72.75798 * 5 4 3 7 7 H 1.08007 * 120.00116 * 2.75784 * 6 5 4 8 8 C 1.37876 * 120.00273 * 182.74961 * 6 5 4 9 9 N 1.31511 * 120.00498 * 180.02562 * 8 6 5 10 10 Si 1.86801 * 119.99703 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47114 * 89.99518 * 10 8 6 12 12 H 1.48495 * 109.47407 * 209.99858 * 10 8 6 13 13 H 1.48500 * 109.47188 * 329.99898 * 10 8 6 14 14 C 1.46891 * 111.00264 * 164.13994 * 4 3 2 15 15 C 1.50700 * 109.47304 * 287.89534 * 14 4 3 16 16 C 1.38481 * 119.99703 * 98.13086 * 15 14 4 17 17 F 1.35098 * 119.96411 * 0.02562 * 16 15 14 18 18 C 1.38408 * 120.07378 * 179.72175 * 16 15 14 19 19 C 1.38233 * 120.07092 * 0.28505 * 18 16 15 20 20 C 1.38588 * 119.99329 * 359.97438 * 19 18 16 21 21 O 1.35997 * 120.04041 * 180.02562 * 20 19 18 22 22 C 1.38296 * 119.99838 * 278.40829 * 15 14 4 23 23 F 1.35107 * 120.03078 * 0.02562 * 22 15 14 24 24 H 1.08007 * 119.99650 * 180.02562 * 1 2 3 25 25 H 1.07994 * 120.00518 * 359.97438 * 1 2 3 26 26 H 1.07994 * 120.00518 * 180.02562 * 2 1 3 27 27 H 1.09005 * 109.46966 * 3.82012 * 3 2 1 28 28 H 1.08998 * 109.47323 * 243.82353 * 3 2 1 29 29 H 1.08999 * 109.47109 * 192.76043 * 5 4 3 30 30 H 1.08997 * 109.47078 * 312.76069 * 5 4 3 31 31 H 0.97006 * 120.00432 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.47036 * 167.89676 * 14 4 3 33 33 H 1.09004 * 109.47281 * 47.90051 * 14 4 3 34 34 H 1.08005 * 119.96670 * 180.29480 * 18 16 15 35 35 H 1.07999 * 120.00404 * 180.02562 * 19 18 16 36 36 H 0.96698 * 114.00813 * 89.99730 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9759 1.3438 1.1506 5 6 2.2326 1.5118 2.4065 6 6 1.5191 0.2280 2.7435 7 1 1.6443 -0.6407 2.1141 8 6 0.7064 0.1623 3.8554 9 7 0.0841 -0.9582 4.1498 10 14 0.4894 1.6649 4.9437 11 1 -0.6616 2.4669 4.4566 12 1 0.2348 1.2316 6.3410 13 1 1.7226 2.4911 4.8986 14 6 3.9824 2.4015 0.9890 15 6 4.9719 1.9954 -0.0726 16 6 4.8344 2.4713 -1.3658 17 9 3.8132 3.3001 -1.6747 18 6 5.7456 2.1039 -2.3407 19 6 6.7916 1.2564 -2.0270 20 6 6.9289 0.7741 -0.7350 21 8 7.9579 -0.0594 -0.4252 22 6 6.0140 1.1428 0.2433 23 9 6.1452 0.6733 1.5034 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9352 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3571 2.1325 0.0685 28 1 2.6377 1.3931 -0.9222 29 1 2.9266 1.7632 3.2086 30 1 1.5033 2.3138 2.2926 31 1 -0.4880 -1.0043 4.9319 32 1 4.5048 2.5533 1.9335 33 1 3.4912 3.3283 0.6924 34 1 5.6394 2.4800 -3.3476 35 1 7.5022 0.9708 -2.7884 36 1 8.7577 0.3962 -0.1289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293810183.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:42 Heat of formation + Delta-G solvation = -69.567285 kcal Electronic energy + Delta-G solvation = -22603.044903 eV Core-core repulsion = 18917.721757 eV Total energy + Delta-G solvation = -3685.323146 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.05077 -48.75508 -39.58485 -37.66342 -36.42873 -32.99657 -32.47158 -31.08432 -29.39451 -27.87886 -26.28732 -23.96481 -22.80318 -21.76652 -20.43772 -19.05749 -18.46908 -18.08428 -17.52426 -16.68786 -16.21559 -15.74158 -15.53323 -15.05889 -14.74528 -14.52098 -14.42604 -14.20075 -13.73037 -13.66006 -13.50283 -12.80958 -12.52725 -12.21852 -12.12945 -11.76879 -11.60686 -11.41014 -11.11851 -10.82296 -10.62658 -10.40123 -10.14007 -9.86197 -9.37141 -8.93902 -8.61352 -8.55368 -8.08125 -7.51192 -5.96430 -3.91132 0.76094 0.88059 3.09951 3.29382 3.32313 3.38612 3.40833 3.71797 3.98176 4.35321 4.47239 4.47631 4.58615 4.89821 4.99304 5.33880 5.34901 5.55842 5.75677 5.79429 5.83963 5.89335 5.91154 5.92959 6.00660 6.11288 6.40832 6.53331 6.74845 6.77428 6.95820 7.38225 7.52827 7.62065 7.67458 7.90767 7.99805 8.70954 9.15637 9.64661 11.16077 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019908 B = 0.005491 C = 0.005035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.126253 B = 5097.611304 C = 5559.197731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.106 4.106 3 C 0.094 3.906 4 N -0.518 5.518 5 C 0.163 3.837 6 C -0.496 4.496 7 H 0.092 0.908 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.868 3.132 11 H -0.279 1.279 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.087 3.913 15 C -0.125 4.125 16 C 0.123 3.877 17 F -0.128 7.128 18 C -0.153 4.153 19 C -0.094 4.094 20 C 0.058 3.942 21 O -0.483 6.483 22 C 0.132 3.868 23 F -0.111 7.111 24 H 0.089 0.911 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.027 0.973 30 H -0.013 1.013 31 H 0.261 0.739 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.781 7.970 -12.961 20.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.125 4.125 3 C -0.033 4.033 4 N -0.241 5.241 5 C 0.037 3.963 6 C -0.534 4.534 7 H 0.109 0.891 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.696 3.304 11 H -0.205 1.205 12 H -0.213 1.213 13 H -0.194 1.194 14 C -0.041 4.041 15 C -0.127 4.127 16 C 0.103 3.897 17 F -0.107 7.107 18 C -0.172 4.172 19 C -0.113 4.113 20 C 0.012 3.988 21 O -0.293 6.293 22 C 0.111 3.889 23 F -0.090 7.090 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.121 0.879 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.004 0.996 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 13.465 7.020 -12.886 19.916 hybrid contribution -0.501 1.881 1.120 2.246 sum 12.964 8.902 -11.765 19.640 Atomic orbital electron populations 1.23350 0.95747 1.00458 1.03015 1.22316 0.95273 0.97267 0.97601 1.21113 0.93807 0.95615 0.92807 1.62038 1.15413 1.42980 1.03696 1.20287 0.92248 0.97602 0.86119 1.21114 1.25161 0.96990 1.10163 0.89065 1.24830 0.95670 0.95428 0.97221 1.69876 1.30978 1.25630 1.27448 0.86985 0.78748 0.84144 0.80569 1.20517 1.21254 1.19444 1.20920 0.92914 0.93980 0.96258 1.19960 0.97770 0.99799 0.95209 1.17227 0.87079 0.92872 0.92525 1.91519 1.56864 1.69077 1.93228 1.20982 0.95367 1.01063 0.99766 1.21049 0.98708 0.95974 0.95572 1.18404 0.92085 0.96300 0.92041 1.84933 1.23408 1.33113 1.87828 1.17564 0.95824 0.95244 0.80265 1.91578 1.95097 1.85986 1.36291 0.89255 0.90007 0.87924 0.95109 0.92268 0.95508 0.99583 0.92868 0.89374 0.93582 0.83807 0.83625 0.75461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.86 13.85 29.01 0.40 -3.46 16 2 C -0.11 -2.23 6.59 -36.03 -0.24 -2.47 16 3 C 0.09 1.86 5.26 -4.98 -0.03 1.84 16 4 N -0.52 -11.00 4.44 -238.96 -1.06 -12.06 16 5 C 0.16 3.99 3.81 -4.97 -0.02 3.97 16 6 C -0.50 -13.97 8.09 -34.44 -0.28 -14.25 16 7 H 0.09 2.78 6.04 -52.48 -0.32 2.46 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 10 Si 0.87 21.74 27.41 -169.99 -4.66 17.08 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.27 -6.50 6.62 56.52 0.37 -6.13 16 14 C 0.09 1.53 4.74 -4.98 -0.02 1.51 16 15 C -0.12 -1.90 4.90 -104.51 -0.51 -2.41 16 16 C 0.12 1.62 6.20 -39.43 -0.24 1.37 16 17 F -0.13 -1.78 15.54 2.25 0.04 -1.74 16 18 C -0.15 -1.55 10.02 -39.52 -0.40 -1.94 16 19 C -0.09 -0.91 9.98 -39.45 -0.39 -1.30 16 20 C 0.06 0.70 6.71 -39.20 -0.26 0.44 16 21 O -0.48 -5.30 13.37 -19.73 -0.26 -5.56 16 22 C 0.13 1.98 7.25 -39.30 -0.29 1.69 16 23 F -0.11 -1.94 16.47 2.25 0.04 -1.90 16 24 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 25 H 0.08 1.62 7.84 -52.49 -0.41 1.20 16 26 H 0.10 2.23 7.92 -52.49 -0.42 1.81 16 27 H 0.03 0.62 7.50 -51.93 -0.39 0.23 16 28 H 0.06 1.06 5.49 -51.93 -0.29 0.78 16 29 H 0.03 0.66 6.96 -51.93 -0.36 0.30 16 30 H -0.01 -0.33 7.13 -51.93 -0.37 -0.70 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.09 1.53 7.47 -51.93 -0.39 1.14 16 33 H 0.05 0.76 7.32 -51.93 -0.38 0.38 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.64 16 35 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.39 2.19 9.06 45.56 0.41 2.60 16 LS Contribution 310.10 15.07 4.67 4.67 Total: -1.00 -32.67 310.10 -6.18 -38.85 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.34 Total: 0.61 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -2.37 Total: -13.10 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: -0.29 Total: -38.90 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.26 Total: -5.56 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.07 Total: -3.65 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.66 Total: 17.08 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.67 -6.18 -38.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293810183.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.721 kcal (2) G-P(sol) polarization free energy of solvation -32.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds