Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 120.00061 * 2 1 4 4 H 1.48497 * 109.47192 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46814 * 299.99723 * 3 2 1 6 6 H 1.48499 * 109.47277 * 59.99862 * 3 2 1 7 7 C 1.37876 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99813 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99801 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00456 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00341 * 179.97438 * 13 11 10 15 15 H 1.09003 * 109.46756 * 35.00840 * 14 13 11 16 16 C 1.50702 * 109.47266 * 154.99966 * 14 13 11 17 17 C 1.38234 * 120.00271 * 220.00163 * 16 14 13 18 18 C 1.38230 * 119.99880 * 179.97438 * 17 16 14 19 19 C 1.38235 * 120.00326 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99485 * 39.98291 * 16 14 13 22 22 C 1.52993 * 109.47545 * 275.00706 * 14 13 11 23 23 F 1.39898 * 109.47239 * 180.02562 * 22 14 13 24 24 F 1.39909 * 109.47085 * 299.99708 * 22 14 13 25 25 H 0.97001 * 120.00002 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46639 * 60.00164 * 9 7 2 27 27 H 1.08999 * 109.47036 * 300.00074 * 9 7 2 28 28 H 1.09000 * 109.47145 * 60.00054 * 10 9 7 29 29 H 1.09003 * 109.47525 * 300.00372 * 10 9 7 30 30 H 0.96999 * 120.00011 * 0.02562 * 13 11 10 31 31 H 1.08001 * 119.99769 * 359.97438 * 17 16 14 32 32 H 1.08000 * 120.00376 * 180.02562 * 18 17 16 33 33 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 34 34 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 35 35 H 1.07997 * 120.00489 * 0.02562 * 21 16 14 36 36 H 1.08997 * 109.47461 * 59.99804 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4918 -4.9672 0.0020 12 8 0.2789 -4.9672 0.0030 13 7 2.1657 -6.1343 0.0014 14 6 1.4332 -7.4031 0.0024 15 1 0.5219 -7.2969 -0.5861 16 6 2.2965 -8.4821 -0.5989 17 6 1.7380 -9.4247 -1.4417 18 6 2.5300 -10.4140 -1.9937 19 6 3.8807 -10.4605 -1.7033 20 6 4.4395 -9.5173 -0.8613 21 6 3.6471 -8.5289 -0.3079 22 6 1.0709 -7.7817 1.4398 23 9 0.3720 -8.9936 1.4408 24 9 2.2407 -7.9180 2.1952 25 1 -0.4850 0.8401 -0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6247 -2.5563 0.8920 28 1 2.8726 -3.6039 0.8909 29 1 2.8713 -3.6047 -0.8890 30 1 3.1357 -6.1344 0.0009 31 1 0.6827 -9.3881 -1.6689 32 1 2.0938 -11.1503 -2.6525 33 1 4.4987 -11.2361 -2.1310 34 1 5.4947 -9.5537 -0.6341 35 1 4.0835 -7.7925 0.3506 36 1 0.4464 -7.0013 1.8747 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294026359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = -127.206188 kcal Electronic energy + Delta-G solvation = -21742.517685 eV Core-core repulsion = 18054.695129 eV Total energy + Delta-G solvation = -3687.822556 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.99514 -46.97967 -40.00931 -38.93186 -35.32976 -33.52261 -31.86468 -31.15117 -30.76098 -28.50590 -25.72697 -23.96074 -23.01166 -21.94224 -20.83143 -19.84818 -17.97041 -17.43502 -17.05963 -16.89800 -16.67565 -15.76666 -15.66644 -15.14831 -14.84523 -14.49782 -14.22843 -13.88606 -13.61300 -13.41840 -13.34541 -13.15197 -12.90849 -12.66336 -12.23052 -12.18431 -11.74532 -11.28380 -11.22769 -11.13025 -10.97383 -10.61238 -10.03143 -9.76898 -9.40713 -9.19817 -9.15474 -9.09940 -8.97545 -8.36133 -5.99903 -4.04440 1.00681 1.16044 2.93900 3.11814 3.30671 3.38172 3.41291 3.47733 3.89859 4.08140 4.27872 4.44670 4.58606 4.74397 4.77689 4.85348 5.00434 5.17514 5.22929 5.31749 5.35480 5.58662 5.66869 5.77755 6.13169 6.14675 6.16118 6.21349 6.25356 6.42903 6.70985 6.79702 7.61023 7.70100 7.79442 8.01714 8.32090 8.53557 9.03692 9.59576 11.11018 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.003497 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.327860 B = 8005.580328 C = 8419.047020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.512 3.488 12 O -0.529 6.529 13 N -0.732 5.732 14 C 0.143 3.857 15 H 0.123 0.877 16 C -0.101 4.101 17 C -0.095 4.095 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.099 4.099 22 C 0.253 3.747 23 F -0.201 7.201 24 F -0.201 7.201 25 H 0.261 0.739 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.404 0.596 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.600 -21.422 -1.424 22.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.302 3.698 12 O -0.404 6.404 13 N -0.388 5.388 14 C 0.036 3.964 15 H 0.141 0.859 16 C -0.102 4.102 17 C -0.113 4.113 18 C -0.138 4.138 19 C -0.132 4.132 20 C -0.137 4.137 21 C -0.118 4.118 22 C 0.197 3.803 23 F -0.182 7.182 24 F -0.183 7.183 25 H 0.070 0.930 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.241 0.759 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.557 -21.288 -1.407 22.319 hybrid contribution 0.935 0.749 0.092 1.201 sum 7.491 -20.539 -1.314 21.902 Atomic orbital electron populations 1.70002 1.06061 1.26542 1.50175 1.25024 0.94832 0.99276 0.95240 0.86529 0.80012 0.83777 0.77607 1.19728 1.21005 1.20998 1.21240 0.92993 0.90922 1.51432 0.92495 1.18924 0.93145 0.89338 0.98713 1.21902 1.00840 0.91257 1.02883 1.21814 0.88781 0.85543 0.73695 1.90692 1.14315 1.87457 1.47914 1.46279 1.10455 1.03989 1.78029 1.20663 0.97832 0.84077 0.93818 0.85933 1.19675 0.94369 0.96821 0.99335 1.21027 1.00173 0.94220 0.95875 1.21133 0.94016 0.98548 1.00131 1.21221 0.95282 0.98740 0.98002 1.21137 0.99957 0.95080 0.97541 1.20998 0.93007 0.98702 0.99055 1.22443 0.80716 0.84390 0.92704 1.92968 1.79190 1.48840 1.97208 1.92959 1.50754 1.96454 1.78094 0.92964 0.95725 0.95735 0.89851 0.89874 0.75940 0.85553 0.85727 0.85943 0.85710 0.85673 0.86363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.53 -14.65 9.11 -34.44 -0.31 -14.97 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 10 C -0.13 -2.48 5.64 -27.89 -0.16 -2.64 16 11 C 0.51 9.14 7.79 -10.99 -0.09 9.05 16 12 O -0.53 -11.44 15.65 5.55 0.09 -11.36 16 13 N -0.73 -9.75 4.95 -54.93 -0.27 -10.02 16 14 C 0.14 1.79 2.42 -69.08 -0.17 1.62 16 15 H 0.12 1.62 7.44 -51.93 -0.39 1.24 16 16 C -0.10 -1.14 4.63 -104.62 -0.48 -1.62 16 17 C -0.09 -0.97 9.67 -39.59 -0.38 -1.35 16 18 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 19 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 20 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 21 C -0.10 -1.01 8.30 -39.58 -0.33 -1.34 16 22 C 0.25 3.23 5.07 37.15 0.19 3.42 16 23 F -0.20 -2.64 17.04 2.25 0.04 -2.60 16 24 F -0.20 -2.65 16.21 2.25 0.04 -2.62 16 25 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.40 4.41 6.87 -40.82 -0.28 4.13 16 31 H 0.13 1.15 8.04 -52.49 -0.42 0.72 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 1.15 6.79 -52.49 -0.36 0.79 16 36 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 LS Contribution 320.46 15.07 4.83 4.83 Total: -1.00 -32.99 320.46 -7.07 -40.06 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.36 Total: 1.32 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.14 Total: -9.71 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.46 Total: -36.29 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.07 Total: -5.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.99 -7.07 -40.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294026359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.149 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds