Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38205 * 119.99831 * 2 1 4 4 C 1.38431 * 119.99752 * 180.02562 * 3 2 1 5 5 F 1.35104 * 120.00085 * 179.97438 * 4 3 2 6 6 C 1.38467 * 120.00175 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.00096 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47320 * 279.97240 * 7 6 4 9 9 O 1.21276 * 119.99663 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00211 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99855 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00196 * 180.02562 * 10 8 7 13 13 C 1.50696 * 109.46986 * 89.99751 * 12 10 8 14 14 H 1.07999 * 120.00730 * 0.02562 * 13 12 10 15 15 C 1.37883 * 119.99911 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99595 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00279 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47165 * 59.98999 * 17 15 13 19 19 H 1.48487 * 109.47158 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46550 * 299.99728 * 17 15 13 21 21 C 1.38165 * 120.00095 * 359.97438 * 6 4 3 22 22 C 1.38422 * 120.00010 * 180.02562 * 2 1 3 23 23 F 1.35104 * 119.99809 * 359.95913 * 22 2 1 24 24 H 1.08997 * 109.47395 * 89.99805 * 1 2 3 25 25 H 1.08992 * 109.47218 * 210.00380 * 1 2 3 26 26 H 1.09007 * 109.47002 * 330.00483 * 1 2 3 27 27 H 1.08000 * 120.00631 * 359.74532 * 3 2 1 28 28 H 1.08999 * 109.47234 * 39.97669 * 7 6 4 29 29 H 1.09009 * 109.46690 * 159.97333 * 7 6 4 30 30 H 1.09005 * 109.46992 * 90.00072 * 11 10 8 31 31 H 1.09000 * 109.47424 * 209.99849 * 11 10 8 32 32 H 1.09003 * 109.47445 * 330.00451 * 11 10 8 33 33 H 1.08995 * 109.47018 * 209.99768 * 12 10 8 34 34 H 1.09000 * 109.46998 * 330.00027 * 12 10 8 35 35 H 0.97001 * 119.99342 * 179.97438 * 16 15 13 36 36 H 1.07999 * 120.00220 * 180.02562 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5823 1.1969 -0.0005 5 9 4.2579 2.3669 -0.0011 6 6 4.2747 -0.0023 -0.0016 7 6 5.7817 -0.0023 -0.0016 8 6 6.2840 0.2450 -1.4007 9 8 5.4959 0.4059 -2.3083 10 7 7.6091 0.2874 -1.6433 11 6 8.5611 0.0936 -0.5468 12 6 8.0975 0.5284 -3.0033 13 6 8.2656 2.0099 -3.2215 14 1 8.0324 2.7028 -2.4266 15 6 8.7171 2.4810 -4.4362 16 7 9.0015 1.6373 -5.4041 17 14 8.9262 4.3175 -4.7065 18 1 9.9053 4.8537 -3.7272 19 1 9.4211 4.5617 -6.0850 20 1 7.6187 4.9969 -4.5218 21 6 3.5839 -1.1988 -0.0016 22 6 2.1991 -1.1988 -0.0005 23 9 1.5236 -2.3688 -0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6581 2.1323 -0.0042 28 1 6.1450 0.7846 0.6593 29 1 6.1449 -0.9682 0.3495 30 1 8.7968 -0.9666 -0.4534 31 1 9.4738 0.6517 -0.7551 32 1 8.1209 0.4512 0.3841 33 1 9.0574 0.0300 -3.1383 34 1 7.3792 0.1344 -3.7224 35 1 9.3188 1.9687 -6.2587 36 1 4.1239 -2.1341 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294586587.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = -107.107598 kcal Electronic energy + Delta-G solvation = -21982.801692 eV Core-core repulsion = 18295.850676 eV Total energy + Delta-G solvation = -3686.951016 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.96473 -48.76882 -39.56865 -38.44613 -34.86743 -33.84978 -32.58888 -30.21286 -30.02583 -27.77630 -26.07008 -25.22247 -23.14656 -22.73209 -21.25758 -18.58679 -17.44583 -17.13807 -17.00271 -16.52648 -16.41666 -15.77703 -15.28400 -15.13566 -14.73483 -14.38677 -14.30930 -14.07005 -13.48296 -13.32459 -13.03821 -12.96844 -12.71760 -12.45710 -12.17695 -12.07887 -11.88409 -11.56036 -11.44750 -11.22347 -11.01471 -10.88608 -10.54697 -10.14902 -9.63853 -9.19515 -8.84444 -8.42458 -8.38749 -7.65793 -6.03294 -4.07950 0.93466 1.00054 3.25170 3.32950 3.36659 3.37492 3.43449 3.96935 4.13111 4.20110 4.43003 4.47410 4.56944 4.74767 5.03721 5.19640 5.27827 5.32010 5.34071 5.38816 5.46028 5.55907 5.69947 5.82639 5.83401 5.90564 6.02429 6.09934 6.15397 6.20213 6.77584 7.04253 7.43799 7.52938 7.92981 8.24119 8.38640 8.90186 9.07027 9.57036 11.04828 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.022752 B = 0.004303 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.340165 B = 6506.135821 C = 6914.144064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.129 4.129 4 C 0.116 3.884 5 F -0.128 7.128 6 C -0.068 4.068 7 C -0.106 4.106 8 C 0.507 3.493 9 O -0.533 6.533 10 N -0.602 5.602 11 C 0.082 3.918 12 C 0.246 3.754 13 C -0.527 4.527 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.111 4.111 22 C 0.083 3.917 23 F -0.137 7.137 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.144 0.856 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 -5.172 15.330 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.148 4.148 4 C 0.096 3.904 5 F -0.106 7.106 6 C -0.069 4.069 7 C -0.146 4.146 8 C 0.293 3.707 9 O -0.410 6.410 10 N -0.334 5.334 11 C -0.062 4.062 12 C 0.127 3.873 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.130 4.130 22 C 0.064 3.936 23 F -0.116 7.116 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.162 0.838 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -11.610 -5.097 14.629 19.359 hybrid contribution 0.377 1.053 -0.244 1.144 sum -11.234 -4.044 14.385 18.694 Atomic orbital electron populations 1.20729 0.89621 1.03369 1.03174 1.19661 0.97129 0.91075 1.01848 1.20809 0.91982 0.98749 1.03243 1.17447 0.89818 0.81289 1.01803 1.91539 1.80199 1.45408 1.93472 1.19237 0.95558 0.91393 1.00747 1.20729 0.90822 1.04958 0.98043 1.20020 0.83005 0.78300 0.89414 1.90695 1.54769 1.49501 1.46083 1.48138 1.04528 1.69391 1.11356 1.21668 0.94624 1.00253 0.89693 1.19293 0.94979 0.96568 0.76475 1.21401 1.44318 0.92080 0.98770 0.92488 1.24932 0.95309 0.98124 0.95691 1.69926 1.45110 1.34282 1.04131 0.86559 0.78537 0.85208 0.77146 1.20223 1.21157 1.20155 1.20808 0.92062 0.98657 1.01456 1.17358 0.89737 0.81005 1.05497 1.91475 1.80178 1.45809 1.94098 0.90425 0.90970 0.90792 0.83841 0.87792 0.87869 0.93634 0.90634 0.92437 0.94943 0.93841 0.92669 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.83 36.01 0.35 -0.63 16 2 C -0.10 -1.15 5.88 -104.57 -0.62 -1.77 16 3 C -0.13 -1.65 9.68 -39.52 -0.38 -2.03 16 4 C 0.12 1.79 7.13 -39.43 -0.28 1.51 16 5 F -0.13 -2.20 16.66 2.25 0.04 -2.16 16 6 C -0.07 -1.02 4.43 -104.56 -0.46 -1.48 16 7 C -0.11 -1.55 4.11 -29.04 -0.12 -1.67 16 8 C 0.51 10.59 7.66 -10.99 -0.08 10.50 16 9 O -0.53 -13.65 15.53 5.56 0.09 -13.56 16 10 N -0.60 -12.79 2.86 -182.96 -0.52 -13.31 16 11 C 0.08 1.26 10.24 59.85 0.61 1.87 16 12 C 0.25 6.50 5.16 -5.20 -0.03 6.48 16 13 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 16 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 17 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 C -0.11 -1.47 9.65 -39.52 -0.38 -1.86 16 22 C 0.08 1.08 7.24 -39.43 -0.29 0.79 16 23 F -0.14 -1.73 16.47 2.25 0.04 -1.69 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.59 7.64 -51.93 -0.40 0.19 16 26 H 0.07 0.51 8.09 -51.92 -0.42 0.10 16 27 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.10 1.37 7.21 -51.93 -0.37 1.00 16 29 H 0.10 1.16 7.97 -51.92 -0.41 0.75 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 32 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 33 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.14 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 320.92 15.07 4.84 4.84 Total: -1.00 -34.31 320.92 -6.30 -40.61 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: -4.40 Total: -3.61 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -2.09 Total: -2.09 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.21 Total: -39.47 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.07 Total: -3.86 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.31 -6.30 -40.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294586587.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.500 kcal (2) G-P(sol) polarization free energy of solvation -34.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds