Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38204 * 119.99835 * 2 1 4 4 C 1.38431 * 119.99787 * 180.02562 * 3 2 1 5 5 F 1.35104 * 120.00113 * 179.97438 * 4 3 2 6 6 C 1.38466 * 120.00179 * 359.97438 * 4 3 2 7 7 C 1.50701 * 120.00117 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47236 * 279.97308 * 7 6 4 9 9 O 1.21288 * 119.99922 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00443 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00222 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46788 * 35.00516 * 11 10 8 13 13 C 1.52995 * 109.47105 * 275.00062 * 11 10 8 14 14 C 1.50706 * 109.46802 * 154.99971 * 11 10 8 15 15 H 1.07994 * 120.00207 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99613 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00491 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99832 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.46813 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46994 * 119.99821 * 18 16 14 21 21 H 1.48506 * 109.46878 * 239.99613 * 18 16 14 22 22 C 1.38165 * 120.00095 * 359.97438 * 6 4 3 23 23 C 1.38423 * 120.00047 * 179.97438 * 2 1 3 24 24 F 1.35104 * 119.99808 * 0.03042 * 23 2 1 25 25 H 1.08997 * 109.46689 * 90.00237 * 1 2 3 26 26 H 1.08996 * 109.47392 * 210.00332 * 1 2 3 27 27 H 1.09002 * 109.47389 * 330.00848 * 1 2 3 28 28 H 1.08003 * 120.00624 * 0.03629 * 3 2 1 29 29 H 1.08997 * 109.47208 * 39.97356 * 7 6 4 30 30 H 1.09003 * 109.46867 * 159.97884 * 7 6 4 31 31 H 0.97001 * 119.99945 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.46309 * 179.97438 * 13 11 10 33 33 H 1.08996 * 109.47304 * 299.99534 * 13 11 10 34 34 H 1.09002 * 109.47011 * 60.00444 * 13 11 10 35 35 H 0.97000 * 120.00327 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.00192 * 179.75095 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5823 1.1969 -0.0005 5 9 4.2579 2.3669 -0.0011 6 6 4.2747 -0.0022 -0.0005 7 6 5.7817 -0.0022 -0.0005 8 6 6.2840 0.2438 -1.3998 9 8 5.4959 0.4030 -2.3079 10 7 7.6090 0.2860 -1.6426 11 6 8.0974 0.5246 -3.0030 12 1 7.4250 1.2132 -3.5148 13 6 8.1483 -0.8003 -3.7664 14 6 9.4791 1.1233 -2.9430 15 1 9.9465 1.3079 -1.9871 16 6 10.1460 1.4362 -4.1084 17 7 9.5767 1.2119 -5.2724 18 14 11.8590 2.1776 -4.0340 19 1 12.2718 2.3285 -2.6156 20 1 12.8157 1.2849 -4.7362 21 1 11.8510 3.5094 -4.6911 22 6 3.5839 -1.1988 0.0005 23 6 2.1991 -1.1988 0.0005 24 9 1.5236 -2.3688 0.0004 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5137 28 1 1.6581 2.1323 0.0006 29 1 6.1450 0.7853 0.6596 30 1 6.1450 -0.9678 0.3513 31 1 8.2394 0.1576 -0.9166 32 1 8.5112 -0.6225 -4.7787 33 1 8.8207 -1.4888 -3.2546 34 1 7.1489 -1.2333 -3.8098 35 1 10.0460 1.4317 -6.0924 36 1 4.1239 -2.1341 -0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294612751.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = -118.152718 kcal Electronic energy + Delta-G solvation = -21741.946751 eV Core-core repulsion = 18054.516783 eV Total energy + Delta-G solvation = -3687.429968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.99244 -48.83124 -39.55181 -38.42024 -34.89631 -33.80703 -32.39075 -30.30607 -30.15360 -28.55309 -25.57322 -25.22368 -23.16745 -21.86964 -20.81561 -19.43472 -17.50325 -17.41570 -17.14454 -16.89152 -16.02433 -15.64705 -15.25940 -15.13969 -14.63492 -14.41957 -14.23920 -14.09628 -13.51492 -13.30239 -13.09317 -13.03380 -12.78549 -12.39788 -12.14811 -11.96401 -11.53942 -11.50432 -11.15424 -11.03774 -10.94262 -10.71825 -10.30630 -10.24617 -9.26824 -9.04851 -8.91854 -8.56147 -8.43371 -7.92352 -6.12642 -4.22011 0.89675 0.96291 3.22081 3.23480 3.31196 3.33638 3.36388 4.01326 4.14923 4.17638 4.36492 4.45186 4.53372 4.70960 5.01142 5.19657 5.24682 5.34072 5.35706 5.41624 5.51555 5.63783 5.79814 5.81549 5.99178 6.06384 6.11665 6.73980 6.82003 6.95583 7.14596 7.45073 7.55202 7.68855 7.91111 8.14524 8.64708 8.77476 9.10851 9.45635 10.93391 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032905 B = 0.003596 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.738252 B = 7785.119647 C = 8098.642875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.129 4.129 4 C 0.114 3.886 5 F -0.129 7.129 6 C -0.066 4.066 7 C -0.109 4.109 8 C 0.504 3.496 9 O -0.548 6.548 10 N -0.708 5.708 11 C 0.264 3.736 12 H 0.048 0.952 13 C -0.147 4.147 14 C -0.533 4.533 15 H 0.062 0.938 16 C 0.065 3.935 17 N -0.883 5.883 18 Si 0.902 3.098 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.111 4.111 23 C 0.084 3.916 24 F -0.137 7.137 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.144 0.856 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.389 0.611 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.264 0.736 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 -3.455 13.507 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.148 4.148 4 C 0.095 3.905 5 F -0.107 7.107 6 C -0.068 4.068 7 C -0.149 4.149 8 C 0.288 3.712 9 O -0.426 6.426 10 N -0.356 5.356 11 C 0.162 3.838 12 H 0.066 0.934 13 C -0.205 4.205 14 C -0.572 4.572 15 H 0.080 0.920 16 C -0.138 4.138 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.130 4.130 23 C 0.065 3.935 24 F -0.115 7.115 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.162 0.838 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.221 0.779 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.074 0.926 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.961 -3.310 12.618 19.107 hybrid contribution 1.367 0.311 0.238 1.422 sum -12.594 -2.999 12.856 18.245 Atomic orbital electron populations 1.20731 0.89603 1.03399 1.03175 1.19667 0.97148 0.91078 1.01850 1.20804 0.91974 0.98737 1.03264 1.17433 0.89806 0.81235 1.02037 1.91528 1.80219 1.45459 1.93535 1.19208 0.95521 0.91363 1.00686 1.20716 0.90956 1.05293 0.97906 1.20139 0.83635 0.78066 0.89396 1.90685 1.55431 1.50364 1.46148 1.46499 1.05192 1.70478 1.13400 1.18756 0.94479 0.93873 0.76665 0.93378 1.22074 0.97129 0.97454 1.03870 1.21257 1.00371 1.42437 0.93098 0.91990 1.24896 0.98317 0.95358 0.95190 1.69913 1.37723 1.47047 0.97402 0.86390 0.83654 0.78859 0.78172 1.19721 1.20874 1.20867 1.20831 0.92081 0.98733 1.01351 1.17369 0.89747 0.81023 1.05373 1.91478 1.80168 1.45801 1.94073 0.90424 0.90950 0.90782 0.83843 0.87716 0.87689 0.77862 0.89148 0.95465 0.96687 0.92625 0.83804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.83 36.01 0.35 -0.59 16 2 C -0.10 -1.11 5.88 -104.57 -0.62 -1.72 16 3 C -0.13 -1.56 9.68 -39.52 -0.38 -1.95 16 4 C 0.11 1.67 7.13 -39.43 -0.28 1.39 16 5 F -0.13 -2.07 16.66 2.25 0.04 -2.03 16 6 C -0.07 -0.95 4.43 -104.56 -0.46 -1.41 16 7 C -0.11 -1.51 5.55 -29.04 -0.16 -1.68 16 8 C 0.50 9.95 7.78 -10.99 -0.09 9.86 16 9 O -0.55 -13.20 15.61 5.55 0.09 -13.12 16 10 N -0.71 -14.61 5.07 -54.93 -0.28 -14.89 16 11 C 0.26 6.76 2.56 -69.08 -0.18 6.58 16 12 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 13 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 14 C -0.53 -14.17 8.73 -34.44 -0.30 -14.47 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.88 -25.03 11.32 55.43 0.63 -24.40 16 18 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.11 -1.44 9.65 -39.52 -0.38 -1.82 16 23 C 0.08 1.06 7.24 -39.43 -0.29 0.77 16 24 F -0.14 -1.69 16.47 2.25 0.04 -1.66 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.57 7.64 -51.93 -0.40 0.17 16 27 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 28 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 29 H 0.10 1.28 7.94 -51.93 -0.41 0.87 16 30 H 0.10 1.13 8.00 -51.93 -0.42 0.71 16 31 H 0.39 6.79 8.54 -40.82 -0.35 6.44 16 32 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 33 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.14 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 319.45 15.07 4.81 4.81 Total: -1.00 -31.76 319.45 -6.58 -38.35 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.36 Total: 3.96 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.53 Total: -6.66 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.35 Total: -39.29 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.12 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.07 Total: -3.69 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.76 -6.58 -38.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294612751.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.806 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds