Wall clock time and date at job start Tue Mar 31 2020 05:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38204 * 119.99835 * 2 1 4 4 C 1.38431 * 119.99787 * 180.02562 * 3 2 1 5 5 F 1.35104 * 120.00113 * 179.97438 * 4 3 2 6 6 C 1.38466 * 120.00179 * 359.97438 * 4 3 2 7 7 C 1.50701 * 120.00117 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47236 * 279.97308 * 7 6 4 9 9 O 1.21288 * 119.99922 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00443 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00222 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.46788 * 35.00516 * 11 10 8 13 13 C 1.52995 * 109.47105 * 275.00062 * 11 10 8 14 14 C 1.50706 * 109.46802 * 154.99971 * 11 10 8 15 15 H 1.07994 * 120.00207 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99613 * 180.02562 * 14 11 10 17 17 N 1.31513 * 120.00491 * 359.97438 * 16 14 11 18 18 Si 1.86808 * 119.99832 * 180.02562 * 16 14 11 19 19 H 1.48494 * 109.46813 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46994 * 119.99821 * 18 16 14 21 21 H 1.48506 * 109.46878 * 239.99613 * 18 16 14 22 22 C 1.38165 * 120.00095 * 359.97438 * 6 4 3 23 23 C 1.38423 * 120.00047 * 179.97438 * 2 1 3 24 24 F 1.35104 * 119.99808 * 0.03042 * 23 2 1 25 25 H 1.08997 * 109.46689 * 90.00237 * 1 2 3 26 26 H 1.08996 * 109.47392 * 210.00332 * 1 2 3 27 27 H 1.09002 * 109.47389 * 330.00848 * 1 2 3 28 28 H 1.08003 * 120.00624 * 0.03629 * 3 2 1 29 29 H 1.08997 * 109.47208 * 39.97356 * 7 6 4 30 30 H 1.09003 * 109.46867 * 159.97884 * 7 6 4 31 31 H 0.97001 * 119.99945 * 0.02562 * 10 8 7 32 32 H 1.09003 * 109.46309 * 179.97438 * 13 11 10 33 33 H 1.08996 * 109.47304 * 299.99534 * 13 11 10 34 34 H 1.09002 * 109.47011 * 60.00444 * 13 11 10 35 35 H 0.97000 * 120.00327 * 180.02562 * 17 16 14 36 36 H 1.07995 * 120.00192 * 179.75095 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5823 1.1969 -0.0005 5 9 4.2579 2.3669 -0.0011 6 6 4.2747 -0.0022 -0.0005 7 6 5.7817 -0.0022 -0.0005 8 6 6.2840 0.2438 -1.3998 9 8 5.4959 0.4030 -2.3079 10 7 7.6090 0.2860 -1.6426 11 6 8.0974 0.5246 -3.0030 12 1 7.4250 1.2132 -3.5148 13 6 8.1483 -0.8003 -3.7664 14 6 9.4791 1.1233 -2.9430 15 1 9.9465 1.3079 -1.9871 16 6 10.1460 1.4362 -4.1084 17 7 9.5767 1.2119 -5.2724 18 14 11.8590 2.1776 -4.0340 19 1 12.2718 2.3285 -2.6156 20 1 12.8157 1.2849 -4.7362 21 1 11.8510 3.5094 -4.6911 22 6 3.5839 -1.1988 0.0005 23 6 2.1991 -1.1988 0.0005 24 9 1.5236 -2.3688 0.0004 25 1 -0.3632 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8901 0.5137 28 1 1.6581 2.1323 0.0006 29 1 6.1450 0.7853 0.6596 30 1 6.1450 -0.9678 0.3513 31 1 8.2394 0.1576 -0.9166 32 1 8.5112 -0.6225 -4.7787 33 1 8.8207 -1.4888 -3.2546 34 1 7.1489 -1.2333 -3.8098 35 1 10.0460 1.4317 -6.0924 36 1 4.1239 -2.1341 -0.0035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294612751.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:32 Heat of formation + Delta-G solvation = -137.526185 kcal Electronic energy + Delta-G solvation = -21742.786848 eV Core-core repulsion = 18054.516783 eV Total energy + Delta-G solvation = -3688.270065 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.97464 -49.95666 -40.87651 -39.71656 -36.75114 -34.87646 -34.31036 -31.65193 -31.16534 -30.08436 -27.35779 -26.56812 -24.14422 -23.34363 -22.20615 -21.14742 -19.04921 -18.47875 -18.20631 -18.06215 -17.58776 -17.07939 -16.84156 -16.36058 -16.02948 -15.91366 -15.37381 -15.28563 -14.74436 -14.43088 -14.23180 -14.18130 -14.04523 -13.93750 -13.70666 -13.04684 -12.99654 -12.85867 -12.77883 -12.63257 -12.47877 -12.28079 -12.12716 -12.02108 -11.09937 -10.82822 -10.60042 -9.99053 -9.74953 -9.46225 -8.18061 -6.35735 -0.11129 -0.00511 1.44146 1.45167 1.57335 1.81419 2.17374 2.38830 2.74437 3.10800 3.12674 3.17678 3.42597 3.58814 3.80674 4.07350 4.11719 4.35768 4.46508 4.53280 4.68304 4.74279 4.75758 4.82783 4.91752 4.96891 5.08692 5.11177 5.16695 5.18124 5.43482 5.61103 5.68724 5.77956 5.90753 6.09740 6.72861 6.96018 7.32275 7.56487 8.88475 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032905 B = 0.003596 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.738252 B = 7785.119647 C = 8098.642875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.092 4.092 3 C -0.129 4.129 4 C 0.088 3.912 5 F -0.144 7.144 6 C -0.086 4.086 7 C -0.095 4.095 8 C 0.499 3.501 9 O -0.597 6.597 10 N -0.704 5.704 11 C 0.270 3.730 12 H -0.005 1.005 13 C -0.133 4.133 14 C -0.546 4.546 15 H 0.075 0.925 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.973 3.027 19 H -0.258 1.258 20 H -0.278 1.278 21 H -0.285 1.285 22 C -0.114 4.114 23 C 0.074 3.926 24 F -0.136 7.136 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.166 0.834 29 H 0.125 0.875 30 H 0.144 0.856 31 H 0.407 0.593 32 H 0.065 0.935 33 H 0.043 0.957 34 H 0.011 0.989 35 H 0.265 0.735 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.380 -3.804 15.434 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.148 4.148 4 C 0.068 3.932 5 F -0.123 7.123 6 C -0.088 4.088 7 C -0.134 4.134 8 C 0.286 3.714 9 O -0.478 6.478 10 N -0.354 5.354 11 C 0.166 3.834 12 H 0.012 0.988 13 C -0.191 4.191 14 C -0.584 4.584 15 H 0.093 0.907 16 C -0.187 4.187 17 N -0.557 5.557 18 Si 0.798 3.202 19 H -0.182 1.182 20 H -0.204 1.204 21 H -0.211 1.211 22 C -0.133 4.133 23 C 0.054 3.946 24 F -0.115 7.115 25 H 0.102 0.898 26 H 0.097 0.903 27 H 0.114 0.886 28 H 0.184 0.816 29 H 0.143 0.857 30 H 0.162 0.838 31 H 0.243 0.757 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.880 -3.674 14.600 20.477 hybrid contribution 1.222 0.403 -0.372 1.339 sum -12.658 -3.272 14.228 19.323 Atomic orbital electron populations 1.20840 0.87245 1.04869 1.03941 1.20041 0.98856 0.90367 1.00061 1.21086 0.91210 1.00057 1.02426 1.17843 0.90951 0.80983 1.03383 1.91483 1.80668 1.46276 1.93853 1.19313 0.95699 0.91755 1.02005 1.20683 0.90939 1.08059 0.93706 1.21126 0.82610 0.76241 0.91414 1.90659 1.56474 1.52216 1.48476 1.46244 1.06327 1.70710 1.12078 1.18332 0.93295 0.92871 0.78884 0.98756 1.21884 0.97071 0.97573 1.02614 1.21594 1.00643 1.42413 0.93746 0.90697 1.25828 1.02437 0.95700 0.94775 1.70066 1.39472 1.48022 0.98150 0.85277 0.78558 0.77605 0.78769 1.18217 1.20383 1.21086 1.21044 0.92494 0.99012 1.00713 1.17563 0.89931 0.81479 1.05610 1.91479 1.80100 1.45799 1.94086 0.89834 0.90292 0.88598 0.81617 0.85727 0.83827 0.75733 0.91662 0.93832 0.96990 0.92585 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.83 71.24 0.70 -0.90 16 2 C -0.09 -1.96 5.88 -19.83 -0.12 -2.07 16 3 C -0.13 -2.97 9.68 22.31 0.22 -2.75 16 4 C 0.09 2.51 7.13 22.37 0.16 2.67 16 5 F -0.14 -4.63 16.66 44.97 0.75 -3.88 16 6 C -0.09 -2.37 4.43 -19.83 -0.09 -2.46 16 7 C -0.09 -2.47 5.55 29.10 0.16 -2.30 16 8 C 0.50 19.61 7.78 87.66 0.68 20.29 16 9 O -0.60 -29.53 15.61 -3.05 -0.05 -29.58 16 10 N -0.70 -28.83 5.07 -446.09 -2.26 -31.09 16 11 C 0.27 14.11 2.56 44.24 0.11 14.22 16 12 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 13 C -0.13 -6.76 9.26 71.98 0.67 -6.10 16 14 C -0.55 -28.96 8.73 25.60 0.22 -28.74 16 15 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 16 C 0.01 0.67 5.30 84.65 0.45 1.12 16 17 N -0.92 -53.18 11.32 21.44 0.24 -52.94 16 18 Si 0.97 42.07 29.54 68.60 2.03 44.10 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 C -0.11 -2.78 9.65 22.31 0.22 -2.56 16 23 C 0.07 1.74 7.24 22.37 0.16 1.90 16 24 F -0.14 -3.15 16.47 44.97 0.74 -2.41 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.04 7.64 -2.39 -0.02 1.02 16 27 H 0.10 0.95 8.09 -2.39 -0.02 0.94 16 28 H 0.17 2.90 8.06 -2.91 -0.02 2.88 16 29 H 0.12 2.77 7.94 -2.39 -0.02 2.75 16 30 H 0.14 2.61 8.00 -2.39 -0.02 2.59 16 31 H 0.41 13.56 8.54 -92.71 -0.79 12.77 16 32 H 0.06 3.66 6.07 -2.39 -0.01 3.64 16 33 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.16 3.21 8.04 -2.91 -0.02 3.19 16 Total: -1.00 -70.82 319.45 5.32 -65.50 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.32 Total: 17.98 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 3.54 Total: -7.67 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -2.02 Total: -84.03 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.05 Total: -29.58 kcal Atomic # 9 Polarization: -7.78 SS G_CDS: 1.49 Total: -6.29 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.82 5.32 -65.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294612751.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.027 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds