Wall clock time and date at job start Tue Mar 31 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38205 * 119.99831 * 2 1 4 4 C 1.38431 * 119.99752 * 180.02562 * 3 2 1 5 5 F 1.35104 * 120.00085 * 179.97438 * 4 3 2 6 6 C 1.38467 * 120.00175 * 0.02562 * 4 3 2 7 7 C 1.50700 * 120.00096 * 180.02562 * 6 4 3 8 8 C 1.50698 * 109.47320 * 279.97240 * 7 6 4 9 9 O 1.21276 * 119.99663 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00211 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00196 * 180.02562 * 10 8 7 12 12 C 1.52991 * 109.47221 * 179.97438 * 11 10 8 13 13 C 1.50701 * 109.47401 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99830 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00314 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00007 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99879 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47353 * 90.00236 * 17 15 13 19 19 H 1.48507 * 109.46689 * 209.99795 * 17 15 13 20 20 H 1.48494 * 109.47218 * 329.99728 * 17 15 13 21 21 C 1.38165 * 120.00095 * 359.97438 * 6 4 3 22 22 C 1.38422 * 120.00010 * 180.02562 * 2 1 3 23 23 F 1.35104 * 119.99809 * 359.95913 * 22 2 1 24 24 H 1.08997 * 109.47395 * 89.99805 * 1 2 3 25 25 H 1.08992 * 109.47218 * 210.00380 * 1 2 3 26 26 H 1.09007 * 109.47002 * 330.00483 * 1 2 3 27 27 H 1.08000 * 120.00631 * 359.74532 * 3 2 1 28 28 H 1.08999 * 109.47234 * 39.97669 * 7 6 4 29 29 H 1.09009 * 109.46690 * 159.97333 * 7 6 4 30 30 H 0.97007 * 119.99809 * 359.97438 * 10 8 7 31 31 H 1.08999 * 109.47020 * 299.99988 * 11 10 8 32 32 H 1.09000 * 109.46950 * 59.99766 * 11 10 8 33 33 H 1.09007 * 109.47330 * 299.99668 * 12 11 10 34 34 H 1.09000 * 109.47272 * 60.00058 * 12 11 10 35 35 H 0.97001 * 119.99829 * 180.02562 * 16 15 13 36 36 H 1.07999 * 120.00220 * 180.02562 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1969 0.0000 4 6 3.5823 1.1969 -0.0005 5 9 4.2579 2.3669 -0.0011 6 6 4.2747 -0.0023 -0.0016 7 6 5.7817 -0.0023 -0.0016 8 6 6.2840 0.2450 -1.4007 9 8 5.4959 0.4059 -2.3083 10 7 7.6091 0.2874 -1.6433 11 6 8.0975 0.5284 -3.0033 12 6 9.6274 0.5282 -3.0033 13 6 10.1298 0.7755 -4.4024 14 1 9.4280 0.9188 -5.2108 15 6 11.4853 0.8197 -4.6504 16 7 11.9237 1.0350 -5.8716 17 14 12.6992 0.5725 -3.2523 18 1 13.0212 -0.8716 -3.1258 19 1 13.9423 1.3339 -3.5357 20 1 12.0991 1.0588 -1.9840 21 6 3.5839 -1.1988 -0.0016 22 6 2.1991 -1.1988 -0.0005 23 9 1.5236 -2.3688 -0.0002 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5138 27 1 1.6581 2.1323 -0.0042 28 1 6.1450 0.7846 0.6593 29 1 6.1449 -0.9682 0.3495 30 1 8.2394 0.1591 -0.9172 31 1 7.7337 -0.2580 -3.6646 32 1 7.7345 1.4946 -3.3538 33 1 9.9908 1.3149 -2.3421 34 1 9.9907 -0.4378 -2.6527 35 1 12.8774 1.0658 -6.0461 36 1 4.1239 -2.1341 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294922093.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:28 Heat of formation + Delta-G solvation = -120.532530 kcal Electronic energy + Delta-G solvation = -21175.127288 eV Core-core repulsion = 17487.594124 eV Total energy + Delta-G solvation = -3687.533165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.14676 -49.04855 -39.87510 -38.76000 -35.09254 -34.07116 -32.82450 -30.79460 -30.38719 -29.57230 -26.18069 -24.47189 -23.34574 -21.74551 -20.82258 -20.17098 -17.67914 -17.41062 -17.30183 -17.05357 -16.76612 -15.99745 -15.44983 -15.25992 -15.17580 -14.56027 -14.48797 -14.20223 -13.72614 -13.65153 -13.41234 -13.38670 -13.27999 -12.93413 -12.61472 -12.28611 -11.99612 -11.70257 -11.50903 -11.28989 -11.20809 -10.41580 -10.30430 -9.98679 -9.65713 -9.35123 -9.17845 -8.66595 -8.63864 -8.56450 -6.12437 -4.12770 0.69707 0.77686 2.86031 3.00509 3.23879 3.31515 3.32767 3.61261 3.90547 3.95195 4.19316 4.33805 4.36234 4.50323 4.81871 5.02126 5.07797 5.10264 5.20373 5.21630 5.23322 5.40097 5.59236 5.64679 5.81617 5.87237 5.89964 6.08692 6.18373 6.53647 6.55150 6.70818 7.10876 7.20961 7.64855 7.84034 8.41385 8.51296 8.91907 9.47482 11.00647 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.034781 B = 0.002994 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.838542 B = 9348.726333 C = 9502.230779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.128 4.128 4 C 0.114 3.886 5 F -0.130 7.130 6 C -0.073 4.073 7 C -0.106 4.106 8 C 0.508 3.492 9 O -0.538 6.538 10 N -0.725 5.725 11 C 0.130 3.870 12 C -0.022 4.022 13 C -0.524 4.524 14 H 0.076 0.924 15 C 0.069 3.931 16 N -0.898 5.898 17 Si 0.883 3.117 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.110 4.110 22 C 0.086 3.914 23 F -0.135 7.135 24 H 0.078 0.922 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.397 0.603 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.265 0.735 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.452 -3.056 18.087 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.095 3.905 5 F -0.108 7.108 6 C -0.074 4.074 7 C -0.146 4.146 8 C 0.293 3.707 9 O -0.416 6.416 10 N -0.375 5.375 11 C 0.008 3.992 12 C -0.059 4.059 13 C -0.562 4.562 14 H 0.094 0.906 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.129 4.129 22 C 0.066 3.934 23 F -0.114 7.114 24 H 0.097 0.903 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.163 0.837 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.230 0.770 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.840 -2.911 17.286 26.475 hybrid contribution 1.216 -0.179 0.873 1.508 sum -18.624 -3.090 18.159 26.195 Atomic orbital electron populations 1.20752 0.89460 1.03556 1.03293 1.19712 0.97282 0.91056 1.01363 1.20826 0.91952 0.98835 1.03082 1.17426 0.89863 0.81137 1.02119 1.91526 1.80205 1.45513 1.93570 1.19142 0.95214 0.91464 1.01590 1.20662 0.91292 1.05741 0.96908 1.20258 0.82959 0.77472 0.90010 1.90718 1.55300 1.49336 1.46205 1.46293 1.06215 1.72343 1.12679 1.21520 0.96455 1.00999 0.80232 1.19793 0.90276 0.96839 0.99036 1.20921 0.92820 1.49875 0.92583 0.90637 1.25007 0.98351 0.94404 0.95548 1.69907 1.14596 1.49434 1.19722 0.86741 0.80754 0.78488 0.83025 1.20221 1.21259 1.19067 1.20840 0.92154 0.98696 1.01185 1.17378 0.89740 0.81100 1.05156 1.91491 1.80137 1.45716 1.94011 0.90303 0.90839 0.90672 0.83711 0.87338 0.87228 0.76990 0.91936 0.91921 0.95969 0.96424 0.92529 0.83697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.83 36.01 0.35 -0.44 16 2 C -0.09 -0.91 5.88 -104.57 -0.62 -1.52 16 3 C -0.13 -1.31 9.68 -39.52 -0.38 -1.69 16 4 C 0.11 1.40 7.13 -39.43 -0.28 1.12 16 5 F -0.13 -1.75 16.66 2.25 0.04 -1.72 16 6 C -0.07 -0.86 4.43 -104.56 -0.46 -1.32 16 7 C -0.11 -1.15 5.55 -29.04 -0.16 -1.31 16 8 C 0.51 8.02 7.82 -10.99 -0.09 7.94 16 9 O -0.54 -10.81 15.95 5.56 0.09 -10.72 16 10 N -0.72 -11.55 5.56 -60.30 -0.33 -11.88 16 11 C 0.13 2.64 5.61 -4.05 -0.02 2.62 16 12 C -0.02 -0.49 4.16 -27.89 -0.12 -0.61 16 13 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 14 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.35 13.96 55.43 0.77 -26.57 16 17 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -5.93 6.54 56.52 0.37 -5.56 16 21 C -0.11 -1.18 9.65 -39.52 -0.38 -1.56 16 22 C 0.09 0.92 7.24 -39.43 -0.29 0.64 16 23 F -0.13 -1.47 16.47 2.25 0.04 -1.43 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.48 7.64 -51.93 -0.40 0.09 16 26 H 0.07 0.39 8.09 -51.92 -0.42 -0.03 16 27 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.11 0.98 7.95 -51.93 -0.41 0.57 16 29 H 0.11 0.85 8.00 -51.92 -0.42 0.43 16 30 H 0.40 5.06 8.47 -40.82 -0.35 4.72 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 34 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.15 1.28 8.04 -52.49 -0.42 0.85 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -33.45 320.66 -6.56 -40.01 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -4.46 Total: 0.50 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.87 Total: -9.26 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.44 Total: -38.46 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.15 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.45 -6.56 -40.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294922093.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.519 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds