Wall clock time and date at job start Tue Mar 31 2020 05:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86800 * 119.99895 * 2 1 4 4 H 1.48503 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47384 * 300.00282 * 3 2 1 6 6 H 1.48506 * 109.46773 * 60.00053 * 3 2 1 7 7 C 1.38658 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99616 * 180.02562 * 7 2 1 9 9 O 1.34828 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.35743 * 117.00215 * 185.05398 * 9 7 2 11 11 C 1.38878 * 120.06866 * 354.46573 * 10 9 7 12 12 C 1.38100 * 119.93122 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06970 * 0.02749 * 12 11 10 14 14 C 1.50701 * 119.92879 * 179.97438 * 13 12 11 15 15 N 1.46898 * 109.46963 * 89.99892 * 14 13 12 16 16 C 1.47452 * 110.99853 * 169.99790 * 15 14 13 17 17 C 1.54317 * 107.37100 * 236.66319 * 16 15 14 18 18 H 1.08992 * 110.70650 * 96.17716 * 17 16 15 19 19 F 1.39904 * 110.70412 * 219.41670 * 17 16 15 20 20 C 1.55397 * 102.89476 * 337.89173 * 17 16 15 21 21 H 1.09008 * 111.05614 * 153.65805 * 20 17 16 22 22 F 1.39899 * 110.87332 * 277.39301 * 20 17 16 23 23 C 1.47839 * 111.00216 * 49.15548 * 15 14 13 24 24 C 1.38300 * 120.13694 * 0.22896 * 13 12 11 25 25 C 1.38098 * 120.06956 * 359.48854 * 24 13 12 26 26 H 0.96998 * 120.00424 * 359.97438 * 1 2 3 27 27 H 1.08009 * 120.03693 * 359.95818 * 11 10 9 28 28 H 1.08009 * 119.96320 * 179.97438 * 12 11 10 29 29 H 1.09002 * 109.47171 * 329.99581 * 14 13 12 30 30 H 1.09005 * 109.46526 * 209.99700 * 14 13 12 31 31 H 1.09003 * 109.88645 * 356.14607 * 16 15 14 32 32 H 1.08995 * 109.88668 * 117.16920 * 16 15 14 33 33 H 1.08996 * 110.37573 * 265.19069 * 23 15 14 34 34 H 1.09006 * 110.37626 * 27.53505 * 23 15 14 35 35 H 1.08002 * 119.96600 * 179.72888 * 24 13 12 36 36 H 1.08000 * 120.03556 * 180.25677 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7095 1.3464 0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8907 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0001 9 8 1.3347 -2.3685 -0.0016 10 6 2.0699 -3.5046 0.1045 11 6 3.4571 -3.4395 0.0921 12 6 4.2023 -4.5971 0.2007 13 6 3.5685 -5.8205 0.3212 14 6 4.3848 -7.0818 0.4389 15 7 4.6561 -7.3589 1.8558 16 6 5.2431 -8.7005 2.0288 17 6 4.3355 -9.4780 3.0051 18 1 3.6263 -10.1002 2.4594 19 9 5.1020 -10.2523 3.8827 20 6 3.5966 -8.3444 3.7691 21 1 2.6311 -8.6876 4.1411 22 9 4.3859 -7.8502 4.8131 23 6 3.4167 -7.2804 2.6578 24 6 2.1873 -5.8891 0.3285 25 6 1.4365 -4.7346 0.2261 26 1 -0.4851 0.8400 0.0004 27 1 3.9527 -2.4845 -0.0027 28 1 5.2812 -4.5471 0.1907 29 1 5.3275 -6.9555 -0.0936 30 1 3.8312 -7.9146 0.0053 31 1 5.2815 -9.2150 1.0686 32 1 6.2473 -8.6151 2.4440 33 1 3.3106 -6.2881 3.0962 34 1 2.5499 -7.5185 2.0413 35 1 1.6952 -6.8464 0.4184 36 1 0.3579 -4.7885 0.2361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295092537.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:09 Heat of formation + Delta-G solvation = -90.585844 kcal Electronic energy + Delta-G solvation = -21737.807003 eV Core-core repulsion = 18051.572424 eV Total energy + Delta-G solvation = -3686.234579 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.37026 -47.26990 -39.48352 -38.39252 -36.38014 -32.55357 -31.78512 -30.28947 -29.31267 -28.40815 -25.75490 -24.55925 -22.24378 -21.52342 -21.48948 -20.31158 -18.09298 -17.60510 -16.97886 -16.93529 -15.92649 -15.48680 -15.00594 -14.81438 -14.77827 -14.55888 -14.21985 -13.81424 -13.67313 -13.60040 -13.51312 -12.98136 -12.81810 -12.50681 -12.33628 -11.86762 -11.66477 -11.57110 -11.26937 -11.02482 -10.84014 -10.77495 -10.63529 -10.52599 -10.44308 -9.38115 -8.88861 -8.46429 -8.24287 -7.25534 -6.49970 -4.08697 2.12920 2.19729 3.09720 3.12037 3.17472 3.64796 3.72270 3.93197 4.03076 4.09233 4.32992 4.52662 4.59821 4.88929 5.01828 5.05676 5.15540 5.17454 5.21663 5.31367 5.54268 5.65323 5.71507 5.80193 5.82675 5.90570 6.14088 6.35150 6.61433 6.69914 6.84137 6.85610 7.01737 7.17133 7.33478 7.38806 7.74960 7.95172 8.95903 9.64652 10.67903 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.032648 B = 0.003346 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.431318 B = 8365.448877 C = 8475.470942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.941 3.059 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.392 4.392 8 H 0.094 0.906 9 O -0.176 6.176 10 C 0.157 3.843 11 C -0.235 4.235 12 C -0.046 4.046 13 C -0.192 4.192 14 C 0.107 3.893 15 N -0.516 5.516 16 C 0.017 3.983 17 C 0.046 3.954 18 H 0.107 0.893 19 F -0.195 7.195 20 C 0.057 3.943 21 H 0.106 0.894 22 F -0.189 7.189 23 C 0.023 3.977 24 C -0.069 4.069 25 C -0.194 4.194 26 H 0.270 0.730 27 H 0.127 0.873 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.828 -16.158 2.798 17.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.079 6.079 10 C 0.103 3.897 11 C -0.254 4.254 12 C -0.065 4.065 13 C -0.194 4.194 14 C -0.019 4.019 15 N -0.240 5.240 16 C -0.112 4.112 17 C 0.008 3.992 18 H 0.125 0.875 19 F -0.176 7.176 20 C 0.020 3.980 21 H 0.124 0.876 22 F -0.170 7.170 23 C -0.105 4.105 24 C -0.088 4.088 25 C -0.213 4.213 26 H 0.080 0.920 27 H 0.145 0.855 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.794 -15.557 2.973 17.235 hybrid contribution -0.014 0.230 -0.203 0.307 sum 6.781 -15.328 2.770 16.988 Atomic orbital electron populations 1.70041 1.05995 1.27673 1.45897 1.25305 0.95850 0.98896 0.96435 0.85639 0.79197 0.80274 0.78295 1.19023 1.20113 1.20078 1.21400 0.91885 0.80743 1.52801 0.88910 1.83970 1.34479 1.11532 1.77955 1.19402 0.90321 0.88033 0.91948 1.21182 0.93771 0.99006 1.11458 1.20586 0.98449 0.91483 0.96002 1.19046 0.93072 0.93858 1.13390 1.21073 0.98942 0.94806 0.87074 1.63832 1.25377 1.25112 1.09707 1.23495 0.99812 0.88981 0.98899 1.23525 0.93660 0.91683 0.90310 0.87511 1.92840 1.77373 1.76512 1.70880 1.23331 0.93916 0.94262 0.86541 0.87599 1.92857 1.76452 1.88724 1.58946 1.23714 0.92912 1.00375 0.93469 1.20473 0.92846 0.96497 0.98987 1.20158 0.99483 0.90312 1.11339 0.92002 0.85507 0.87332 0.90237 0.94477 0.91008 0.88841 0.87860 0.90660 0.87529 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.93 13.67 55.48 0.76 -24.17 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.29 29.55 -169.99 -5.02 15.27 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.39 -10.80 9.49 30.89 0.29 -10.50 16 8 H 0.09 2.37 5.20 -52.48 -0.27 2.10 16 9 O -0.18 -4.94 9.76 0.08 0.00 -4.93 16 10 C 0.16 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.23 -4.96 9.17 -39.40 -0.36 -5.32 16 12 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 13 C -0.19 -3.03 4.63 -104.57 -0.48 -3.51 16 14 C 0.11 1.32 5.01 -4.98 -0.02 1.30 16 15 N -0.52 -6.33 5.31 -232.69 -1.24 -7.57 16 16 C 0.02 0.17 6.69 -2.83 -0.02 0.15 16 17 C 0.05 0.43 4.66 -24.77 -0.12 0.31 16 18 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 19 F -0.20 -2.27 16.92 2.25 0.04 -2.23 16 20 C 0.06 0.60 4.75 -24.45 -0.12 0.48 16 21 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 22 F -0.19 -2.64 16.97 2.25 0.04 -2.60 16 23 C 0.02 0.27 5.17 -2.30 -0.01 0.26 16 24 C -0.07 -1.12 8.19 -39.61 -0.32 -1.44 16 25 C -0.19 -3.86 9.99 -39.39 -0.39 -4.26 16 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.13 2.72 5.64 -52.48 -0.30 2.42 16 28 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 29 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.04 0.40 7.90 -51.93 -0.41 -0.01 16 31 H 0.07 0.58 7.49 -51.93 -0.39 0.19 16 32 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.08 0.79 5.71 -51.93 -0.30 0.50 16 35 H 0.11 1.39 7.12 -52.49 -0.37 1.01 16 36 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 307.18 15.07 4.63 4.63 Total: -1.00 -30.75 307.18 -7.22 -37.97 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.13 Total: 2.98 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -2.30 Total: -19.35 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: -0.48 Total: -31.74 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: 0.00 Total: -4.93 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.08 Total: -4.83 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.75 -7.22 -37.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295092537.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.612 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds