Wall clock time and date at job start Tue Mar 31 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 F 1.39903 * 109.46881 * 2 1 4 4 F 1.39898 * 109.47072 * 240.00215 * 2 1 3 5 5 C 1.53000 * 109.47204 * 119.99699 * 2 1 3 6 6 C 1.52999 * 109.47108 * 179.97438 * 5 2 1 7 7 N 1.46492 * 109.47134 * 180.02562 * 6 5 2 8 8 C 1.34777 * 120.00403 * 180.02562 * 7 6 5 9 9 O 1.21592 * 119.99740 * 0.02562 * 8 7 6 10 10 C 1.47639 * 120.00339 * 180.02562 * 8 7 6 11 11 C 1.40007 * 119.89573 * 0.24611 * 10 8 7 12 12 C 1.36318 * 120.10468 * 180.25591 * 11 10 8 13 13 C 1.40884 * 119.89177 * 359.47662 * 12 11 10 14 14 C 1.41116 * 120.10368 * 180.29746 * 13 12 11 15 15 H 1.07997 * 120.00134 * 154.53831 * 14 13 12 16 16 C 1.40227 * 119.99714 * 334.53632 * 14 13 12 17 17 N 1.30644 * 120.00033 * 343.04996 * 16 14 13 18 18 Si 1.86799 * 119.99848 * 163.05218 * 16 14 13 19 19 H 1.48501 * 109.47314 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47265 * 119.99809 * 18 16 14 21 21 H 1.48498 * 109.47305 * 239.99792 * 18 16 14 22 22 C 1.40889 * 119.79628 * 0.27580 * 13 12 11 23 23 C 1.36316 * 119.88883 * 359.97438 * 22 13 12 24 24 H 1.09004 * 109.47263 * 300.00220 * 1 2 3 25 25 H 1.08998 * 109.47243 * 60.00215 * 1 2 3 26 26 H 1.09003 * 109.47507 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46730 * 60.00110 * 5 2 1 28 28 H 1.08995 * 109.47087 * 300.00466 * 5 2 1 29 29 H 1.09000 * 109.46513 * 60.00323 * 6 5 2 30 30 H 1.08994 * 109.47508 * 300.00819 * 6 5 2 31 31 H 0.97005 * 120.00342 * 0.02562 * 7 6 5 32 32 H 1.08000 * 119.95276 * 0.03420 * 11 10 8 33 33 H 1.08007 * 120.05277 * 179.74755 * 12 11 10 34 34 H 0.97005 * 119.99903 * 179.97438 * 17 16 14 35 35 H 1.08002 * 120.05358 * 180.02562 * 22 13 12 36 36 H 1.08002 * 119.94674 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0400 -0.7212 1.2493 6 6 3.5700 -0.7217 1.2489 7 7 4.0583 -1.4128 2.4448 8 6 5.3834 -1.5360 2.6580 9 8 6.1736 -1.0732 1.8581 10 6 5.8756 -2.2330 3.8629 11 6 4.9638 -2.7696 4.7800 12 6 5.4135 -3.4094 5.8966 13 6 6.7982 -3.5398 6.1214 14 6 7.2686 -4.2067 7.2726 15 1 8.2447 -4.6689 7.2679 16 6 6.4686 -4.2694 8.4226 17 7 5.4567 -3.4545 8.5596 18 14 6.8499 -5.5180 9.7586 19 1 8.0378 -6.3173 9.3647 20 1 7.1301 -4.8092 11.0331 21 1 5.6846 -6.4204 9.9400 22 6 7.7118 -3.0027 5.1930 23 6 7.2526 -2.3602 4.0820 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.6767 -1.7488 1.2493 28 1 1.6766 -0.2074 2.1392 29 1 3.9336 0.3058 1.2487 30 1 3.9330 -1.2357 0.3590 31 1 3.4280 -1.7817 3.0832 32 1 3.9026 -2.6734 4.6044 33 1 4.7094 -3.8194 6.6055 34 1 4.9031 -3.4981 9.3550 35 1 8.7742 -3.1007 5.3610 36 1 7.9522 -1.9477 3.3699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295638897.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:19 Heat of formation + Delta-G solvation = -139.738469 kcal Electronic energy + Delta-G solvation = -21155.834137 eV Core-core repulsion = 17467.468140 eV Total energy + Delta-G solvation = -3688.365997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.14113 -47.11512 -39.12622 -37.19185 -35.30839 -33.88595 -32.85382 -30.52573 -29.48526 -29.12518 -26.01879 -23.84099 -21.84767 -21.66136 -20.89128 -19.66258 -17.82753 -17.55399 -17.09302 -16.77124 -16.10006 -15.51622 -15.25703 -15.05693 -14.07351 -14.04030 -13.85433 -13.50473 -13.40354 -13.33920 -13.21498 -12.86517 -12.76620 -12.47691 -12.17845 -11.97513 -11.85614 -11.62904 -11.37807 -11.29632 -11.09725 -10.95796 -10.66253 -10.05535 -9.58598 -9.38705 -9.00775 -8.66054 -7.74688 -7.55886 -7.05230 -4.62658 2.20277 2.88939 2.93725 2.99330 3.01264 3.35205 3.72260 3.72644 3.84862 3.95960 4.15148 4.28449 4.54683 4.84290 4.86147 5.09152 5.32592 5.34613 5.46227 5.54461 5.77499 5.85453 6.00292 6.12473 6.30080 6.74611 6.80883 6.85874 7.01944 7.10812 7.41515 7.62161 7.75705 7.83885 8.04960 8.18864 8.37767 8.61080 8.72840 9.04032 9.86906 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.031909 B = 0.003049 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.296339 B = 9179.898960 C = 9803.205426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.292 3.708 3 F -0.199 7.199 4 F -0.199 7.199 5 C -0.175 4.175 6 C 0.121 3.879 7 N -0.742 5.742 8 C 0.572 3.428 9 O -0.573 6.573 10 C -0.284 4.284 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.442 4.442 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.773 5.773 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.269 1.269 22 C -0.238 4.238 23 C -0.022 4.022 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.398 0.602 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.286 0.714 35 H 0.099 0.901 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.754 2.435 -7.424 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.255 3.745 3 F -0.180 7.180 4 F -0.180 7.180 5 C -0.213 4.213 6 C -0.004 4.004 7 N -0.396 5.396 8 C 0.366 3.634 9 O -0.454 6.454 10 C -0.288 4.288 11 C -0.082 4.082 12 C -0.196 4.196 13 C 0.125 3.875 14 C -0.470 4.470 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.396 5.396 18 Si 0.737 3.263 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.257 4.257 23 C -0.041 4.041 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.233 0.767 32 H 0.106 0.894 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.360 2.864 -7.859 14.107 hybrid contribution -0.252 -0.529 0.898 1.072 sum -11.612 2.335 -6.961 13.738 Atomic orbital electron populations 1.22770 0.91384 1.05531 1.05426 1.21000 0.93713 0.75795 0.83992 1.93030 1.90572 1.37570 1.96860 1.93027 1.90574 1.80911 1.53536 1.22852 0.97967 1.03252 0.97254 1.21081 0.90917 0.98632 0.89735 1.45824 1.08016 1.60767 1.24962 1.18606 0.80752 0.78087 0.85920 1.90648 1.55443 1.51100 1.48252 1.18884 0.94311 1.16753 0.98874 1.20462 0.96120 0.97250 0.94414 1.20973 0.96143 1.05091 0.97429 1.17799 0.91715 0.86814 0.91135 1.19884 1.02676 1.28714 0.95738 0.89663 1.26099 0.93705 0.94941 0.99970 1.69747 1.13461 1.29129 1.27299 0.86162 0.79993 0.80582 0.79562 1.18066 1.19667 1.19399 1.20736 0.98167 1.08147 0.98695 1.20372 0.93533 0.94769 0.95421 0.89129 0.89976 0.89141 0.88068 0.88034 0.91235 0.91245 0.76719 0.89356 0.86183 0.90303 0.88322 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.21 9.38 37.16 0.35 -0.86 16 2 C 0.29 2.87 2.11 -26.73 -0.06 2.82 16 3 F -0.20 -2.40 16.54 2.25 0.04 -2.36 16 4 F -0.20 -2.39 16.54 2.25 0.04 -2.35 16 5 C -0.18 -1.68 4.92 -26.73 -0.13 -1.82 16 6 C 0.12 1.73 5.43 -4.05 -0.02 1.71 16 7 N -0.74 -12.28 5.50 -61.32 -0.34 -12.62 16 8 C 0.57 12.30 7.76 -12.42 -0.10 12.20 16 9 O -0.57 -14.00 16.32 5.29 0.09 -13.91 16 10 C -0.28 -6.48 5.89 -104.73 -0.62 -7.10 16 11 C -0.06 -1.38 9.47 -39.61 -0.38 -1.75 16 12 C -0.18 -4.28 8.63 -39.27 -0.34 -4.62 16 13 C 0.13 3.25 5.57 -106.80 -0.59 2.66 16 14 C -0.44 -10.92 9.05 -37.74 -0.34 -11.26 16 15 H 0.09 2.02 7.90 -52.49 -0.41 1.60 16 16 C 0.07 1.70 5.15 -17.31 -0.09 1.61 16 17 N -0.77 -18.28 10.95 55.56 0.61 -17.67 16 18 Si 0.91 17.07 29.59 -169.99 -5.03 12.04 16 19 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 21 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 22 C -0.24 -5.75 9.73 -39.27 -0.38 -6.14 16 23 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 24 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 1.09 7.80 -51.93 -0.41 0.69 16 30 H 0.07 1.08 7.80 -51.93 -0.41 0.68 16 31 H 0.40 5.61 6.47 -40.82 -0.26 5.35 16 32 H 0.09 1.60 6.37 -52.49 -0.33 1.26 16 33 H 0.12 2.92 6.18 -52.48 -0.32 2.60 16 34 H 0.29 6.04 8.29 -40.82 -0.34 5.71 16 35 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.10 2.33 7.63 -52.49 -0.40 1.93 16 LS Contribution 316.62 15.07 4.77 4.77 Total: -1.00 -29.45 316.62 -7.12 -36.57 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -4.22 Total: 8.96 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -3.07 Total: -13.43 kcal Atomic # 7 Polarization: -30.56 SS G_CDS: 0.27 Total: -30.29 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 9 Polarization: -4.79 SS G_CDS: 0.07 Total: -4.71 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.03 Total: 12.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.45 -7.12 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295638897.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.167 kcal (2) G-P(sol) polarization free energy of solvation -29.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds