Wall clock time and date at job start Tue Mar 31 2020 05:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.09005 * 110.80636 * 325.70047 * 11 10 9 13 13 C 1.54807 * 110.90955 * 89.33199 * 11 10 9 14 14 C 1.54100 * 104.19117 * 97.31357 * 13 11 10 15 15 O 1.43746 * 107.28949 * 357.97256 * 14 13 11 16 16 C 1.44469 * 106.98843 * 26.51622 * 15 14 13 17 17 H 1.09003 * 110.62462 * 78.42406 * 16 15 14 18 18 C 1.50699 * 110.65455 * 201.45025 * 16 15 14 19 19 C 1.38261 * 119.96386 * 214.03653 * 18 16 15 20 20 C 1.38206 * 120.07172 * 180.02562 * 19 18 16 21 21 C 1.38414 * 119.99999 * 0.02562 * 20 19 18 22 22 F 1.35109 * 120.03546 * 180.02562 * 21 20 19 23 23 C 1.38644 * 119.93041 * 0.02562 * 21 20 19 24 24 F 1.35102 * 120.03829 * 180.02562 * 23 21 20 25 25 C 1.38211 * 119.96705 * 33.76519 * 18 16 15 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.00895 * 111.00143 * 56.04990 * 10 9 7 30 30 H 1.08999 * 110.48952 * 215.99693 * 13 11 10 31 31 H 1.09000 * 110.48413 * 338.49891 * 13 11 10 32 32 H 1.09001 * 109.87712 * 117.39516 * 14 13 11 33 33 H 1.08999 * 109.87792 * 238.39700 * 14 13 11 34 34 H 1.08004 * 119.96563 * 359.97398 * 19 18 16 35 35 H 1.08001 * 120.00090 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.99874 * 359.97438 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5806 -4.8462 0.5728 13 6 1.2276 -5.3842 -1.4474 14 6 2.3782 -6.3637 -1.7496 15 8 3.2368 -6.3828 -0.5969 16 6 2.4209 -6.0331 0.5430 17 1 1.8271 -6.8879 0.8668 18 6 3.2772 -5.5215 1.6726 19 6 2.9198 -5.7819 2.9826 20 6 3.7031 -5.3133 4.0204 21 6 4.8465 -4.5821 3.7488 22 9 5.6131 -4.1241 4.7627 23 6 5.2044 -4.3201 2.4352 24 9 6.3203 -3.6071 2.1676 25 6 4.4219 -4.7974 1.3980 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8405 -3.5488 0.7808 30 1 0.2667 -5.8958 -1.5025 31 1 1.2499 -4.5413 -2.1381 32 1 1.9780 -7.3613 -1.9303 33 1 2.9344 -6.0238 -2.6232 34 1 2.0270 -6.3513 3.1953 35 1 3.4226 -5.5170 5.0432 36 1 4.7026 -4.5988 0.3742 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298456250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:14 Heat of formation + Delta-G solvation = -105.462127 kcal Electronic energy + Delta-G solvation = -22490.019352 eV Core-core repulsion = 18803.139689 eV Total energy + Delta-G solvation = -3686.879663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.34931 -48.41707 -40.15704 -38.18661 -34.90597 -32.58607 -31.71664 -30.83259 -30.18680 -27.68229 -25.85370 -23.46749 -22.98018 -22.01582 -21.27777 -20.01361 -17.91218 -17.19876 -17.09388 -16.56447 -16.17666 -15.96350 -15.58154 -15.06459 -14.82794 -14.72631 -14.42152 -14.37204 -13.91699 -13.55002 -13.06001 -12.82207 -12.51745 -12.40050 -12.10549 -11.59548 -11.49762 -11.27056 -11.25464 -11.00254 -10.84310 -10.63056 -10.56927 -9.93410 -9.52496 -9.26063 -8.94731 -8.57991 -8.51006 -7.40530 -6.06434 -4.08298 0.87468 1.04251 3.29557 3.33273 3.36460 3.40645 3.82087 3.94968 4.37471 4.41044 4.52161 4.66310 4.83972 4.94052 4.98637 5.17504 5.26449 5.29604 5.30036 5.44450 5.66310 5.76709 5.85016 5.90049 5.92026 5.99298 6.03197 6.15068 6.35376 6.47518 6.76488 6.96941 7.18869 7.34238 7.74361 8.07797 8.29678 8.53582 9.00228 9.56965 11.04524 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.006858 C = 0.004935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.641332 B = 4082.091115 C = 5672.554087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.287 1.287 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.195 3.805 10 N -0.679 5.679 11 C 0.061 3.939 12 H 0.057 0.943 13 C -0.145 4.145 14 C 0.056 3.944 15 O -0.364 6.364 16 C 0.116 3.884 17 H 0.084 0.916 18 C -0.065 4.065 19 C -0.092 4.092 20 C -0.128 4.128 21 C 0.066 3.934 22 F -0.131 7.131 23 C 0.069 3.931 24 F -0.127 7.127 25 C -0.088 4.088 26 H 0.262 0.738 27 H -0.014 1.014 28 H 0.029 0.971 29 H 0.333 0.667 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.168 -14.913 4.094 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.314 5.314 11 C -0.050 4.050 12 H 0.075 0.925 13 C -0.183 4.183 14 C -0.020 4.020 15 O -0.284 6.284 16 C 0.058 3.942 17 H 0.102 0.898 18 C -0.066 4.066 19 C -0.110 4.110 20 C -0.147 4.147 21 C 0.046 3.954 22 F -0.110 7.110 23 C 0.049 3.951 24 F -0.105 7.105 25 C -0.106 4.106 26 H 0.072 0.928 27 H 0.004 0.996 28 H 0.047 0.953 29 H 0.155 0.845 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.397 -14.765 3.442 15.785 hybrid contribution 0.093 1.298 0.998 1.640 sum 4.490 -13.467 4.439 14.873 Atomic orbital electron populations 1.69946 1.06043 1.26931 1.50772 1.24961 0.94868 0.99314 0.95225 0.86569 0.79486 0.82659 0.78797 1.21284 1.20198 1.20081 1.21112 0.93464 0.90186 1.50594 0.92094 1.19595 0.90520 0.87259 0.95725 1.60853 1.20834 1.00169 1.49534 1.22975 0.95546 0.91456 0.95035 0.92498 1.23009 0.97622 0.99762 0.97955 1.23055 0.91878 0.97819 0.89284 1.88867 1.33532 1.90433 1.15519 1.22115 0.90208 0.96243 0.85670 0.89827 1.19491 0.95260 0.97917 0.93938 1.20842 0.99693 0.99642 0.90863 1.20944 0.93499 0.99125 1.01136 1.17731 0.93136 1.01334 0.83200 1.91515 1.74241 1.87139 1.58102 1.17686 0.87002 0.98273 0.92185 1.91536 1.48875 1.75641 1.94483 1.21085 0.93491 0.96125 0.99948 0.92841 0.99632 0.95305 0.84550 0.91259 0.89033 0.93020 0.89808 0.84243 0.83652 0.82193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 5.00 5.32 -4.98 -0.03 4.97 16 10 N -0.68 -14.06 6.15 -105.87 -0.65 -14.72 16 11 C 0.06 1.01 3.20 -65.70 -0.21 0.80 16 12 H 0.06 0.95 7.87 -51.93 -0.41 0.54 16 13 C -0.15 -2.09 6.75 -25.20 -0.17 -2.26 16 14 C 0.06 0.72 7.70 37.73 0.29 1.01 16 15 O -0.36 -5.38 10.41 -35.23 -0.37 -5.74 16 16 C 0.12 1.59 3.47 -26.83 -0.09 1.49 16 17 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 18 C -0.07 -0.91 4.34 -104.62 -0.45 -1.37 16 19 C -0.09 -1.07 9.69 -39.58 -0.38 -1.45 16 20 C -0.13 -1.51 10.02 -39.53 -0.40 -1.91 16 21 C 0.07 0.95 7.31 -39.37 -0.29 0.67 16 22 F -0.13 -1.96 17.18 2.25 0.04 -1.92 16 23 C 0.07 1.08 7.31 -39.37 -0.29 0.80 16 24 F -0.13 -2.14 17.18 2.25 0.04 -2.10 16 25 C -0.09 -1.36 7.03 -39.53 -0.28 -1.64 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H -0.01 -0.38 8.09 -51.92 -0.42 -0.80 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.33 6.82 4.89 -39.29 -0.19 6.62 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 1.52 8.06 -51.93 -0.42 1.10 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 35 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.16 2.62 7.62 -52.49 -0.40 2.22 16 LS Contribution 311.40 15.07 4.69 4.69 Total: -1.00 -30.71 311.40 -7.59 -38.29 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -4.34 Total: 2.65 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.71 Total: -12.21 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.09 Total: -40.56 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.37 Total: -5.74 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.08 Total: -4.02 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.71 -7.59 -38.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298456250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.169 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds