Wall clock time and date at job start Tue Mar 31 2020 05:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86793 * 120.00047 * 2 1 4 4 H 1.48507 * 109.47107 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46934 * 120.00121 * 3 2 1 6 6 H 1.48495 * 109.47287 * 240.00163 * 3 2 1 7 7 C 1.38815 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99810 * 201.58354 * 7 2 1 9 9 N 1.36937 * 119.99751 * 21.58386 * 7 2 1 10 10 C 1.46496 * 120.00312 * 35.48267 * 9 7 2 11 11 C 1.53001 * 109.47243 * 90.00046 * 10 9 7 12 12 H 1.09002 * 109.47154 * 304.99995 * 11 10 9 13 13 O 1.42904 * 109.47085 * 64.99932 * 11 10 9 14 14 C 1.50697 * 109.47336 * 185.00113 * 11 10 9 15 15 C 1.38237 * 119.98734 * 264.99960 * 14 11 10 16 16 C 1.38186 * 120.05037 * 179.97438 * 15 14 11 17 17 C 1.38495 * 120.02553 * 359.97438 * 16 15 14 18 18 F 1.35095 * 120.01480 * 179.97438 * 17 16 15 19 19 C 1.38403 * 119.97529 * 0.02562 * 17 16 15 20 20 C 1.38438 * 119.94875 * 359.76639 * 19 17 16 21 21 F 1.35104 * 120.01621 * 180.23467 * 20 19 17 22 22 C 1.46505 * 119.99719 * 215.48537 * 9 7 2 23 23 C 1.52996 * 117.49852 * 10.93718 * 22 9 7 24 24 C 1.53004 * 60.00258 * 252.51329 * 23 22 9 25 25 H 0.97000 * 120.00016 * 357.45889 * 1 2 3 26 26 H 1.09005 * 109.47258 * 209.99952 * 10 9 7 27 27 H 1.08998 * 109.47200 * 329.99666 * 10 9 7 28 28 H 0.96701 * 113.99876 * 60.00555 * 13 11 10 29 29 H 1.07999 * 119.97150 * 359.97438 * 15 14 11 30 30 H 1.07997 * 119.98673 * 179.97438 * 16 15 14 31 31 H 1.07999 * 120.02270 * 179.97438 * 19 17 16 32 32 H 1.08994 * 115.55136 * 156.64980 * 22 9 7 33 33 H 1.08996 * 117.49945 * 359.97438 * 23 22 9 34 34 H 1.08997 * 117.50164 * 145.02447 * 23 22 9 35 35 H 1.09001 * 117.49772 * 252.51405 * 24 23 22 36 36 H 1.08997 * 117.49970 * 107.48484 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2851 2.7464 0.0006 5 1 3.1039 1.6963 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0334 -1.2351 0.3435 9 7 1.3975 -2.3463 -0.4373 10 6 0.4411 -2.2878 -1.5454 11 6 1.1820 -2.4844 -2.8696 12 1 1.9847 -1.7512 -2.9491 13 8 1.7339 -3.8017 -2.9156 14 6 0.2201 -2.3023 -4.0153 15 6 -0.3995 -3.4022 -4.5786 16 6 -1.2822 -3.2368 -5.6288 17 6 -1.5474 -1.9685 -6.1180 18 9 -2.4099 -1.8070 -7.1451 19 6 -0.9276 -0.8666 -5.5548 20 6 -0.0468 -1.0331 -4.4998 21 9 0.5554 0.0420 -3.9460 22 6 1.6985 -3.6288 0.2037 23 6 2.4983 -3.5965 1.5075 24 6 3.1585 -4.0865 0.2171 25 1 -0.4850 0.8392 0.0372 26 1 -0.3030 -3.0752 -1.4251 27 1 -0.0544 -1.3170 -1.5469 28 1 1.0752 -4.5066 -2.8499 29 1 -0.1936 -4.3915 -4.1974 30 1 -1.7654 -4.0968 -6.0684 31 1 -1.1335 0.1227 -5.9359 32 1 0.9314 -4.3965 0.1023 33 1 2.8010 -2.6210 1.8882 34 1 2.2575 -4.3429 2.2644 35 1 3.3517 -5.1553 0.1250 36 1 3.8949 -3.4333 -0.2510 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299512351.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:32 Heat of formation + Delta-G solvation = -63.613497 kcal Electronic energy + Delta-G solvation = -22706.726225 eV Core-core repulsion = 19021.661255 eV Total energy + Delta-G solvation = -3685.064970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.95883 -48.63916 -39.18190 -37.26359 -35.97153 -33.40913 -31.26402 -30.77477 -30.25281 -27.02727 -24.60883 -23.03555 -22.64714 -21.30333 -20.87248 -19.87520 -18.18745 -17.09741 -17.07669 -16.07349 -15.79162 -15.63538 -15.43932 -15.05186 -14.80836 -14.36170 -14.32210 -14.06248 -13.76734 -13.55667 -12.95473 -12.50905 -12.31003 -11.92419 -11.73524 -11.39491 -11.17172 -10.82757 -10.81779 -10.65656 -10.54183 -10.43271 -10.06297 -9.60957 -9.59965 -9.23064 -8.97381 -8.47238 -8.40412 -6.54189 -5.86392 -3.41713 1.05756 1.10352 3.34225 3.40682 3.43660 3.45509 3.98628 4.39334 4.55256 4.65606 4.76416 4.85933 4.97240 5.00334 5.30104 5.33240 5.37876 5.80174 5.86991 5.92284 5.99348 6.04640 6.08819 6.12813 6.25223 6.31200 6.34490 6.54188 6.63620 6.84122 6.93986 7.04827 7.19742 7.41847 7.77115 8.14672 8.42754 9.09314 9.72743 10.27800 11.12332 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016993 B = 0.006462 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.330702 B = 4331.670986 C = 5564.550722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.016 3.984 3 Si 0.898 3.102 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.540 5.540 10 C 0.126 3.874 11 C 0.122 3.878 12 H 0.111 0.889 13 O -0.546 6.546 14 C -0.140 4.140 15 C -0.063 4.063 16 C -0.163 4.163 17 C 0.112 3.888 18 F -0.138 7.138 19 C -0.192 4.192 20 C 0.141 3.859 21 F -0.119 7.119 22 C 0.134 3.866 23 C -0.200 4.200 24 C -0.215 4.215 25 H 0.258 0.742 26 H 0.031 0.969 27 H 0.112 0.888 28 H 0.358 0.642 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.801 -6.490 -9.326 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.185 4.185 3 Si 0.727 3.273 4 H -0.215 1.215 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.255 5.255 10 C -0.001 4.001 11 C 0.061 3.939 12 H 0.128 0.872 13 O -0.350 6.350 14 C -0.142 4.142 15 C -0.081 4.081 16 C -0.182 4.182 17 C 0.093 3.907 18 F -0.117 7.117 19 C -0.212 4.212 20 C 0.121 3.879 21 F -0.097 7.097 22 C 0.024 3.976 23 C -0.239 4.239 24 C -0.256 4.256 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.129 0.871 28 H 0.204 0.796 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.162 0.838 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.402 -5.912 -9.389 11.352 hybrid contribution -0.159 0.919 -0.085 0.937 sum -2.562 -4.993 -9.474 11.011 Atomic orbital electron populations 1.69877 1.05568 1.26164 1.51080 1.25130 0.95057 0.98699 0.99587 0.86442 0.79299 0.83131 0.78464 1.21464 1.20650 1.20589 1.18931 0.94697 0.85122 1.40356 0.91808 1.43200 1.48706 1.01677 1.31876 1.21645 0.90726 1.04030 0.83724 1.21870 0.95130 0.84875 0.92051 0.87158 1.86669 1.37152 1.14825 1.96326 1.21133 1.01326 0.91852 0.99923 1.20597 0.94287 0.98722 0.94531 1.21077 1.01705 0.95865 0.99526 1.17227 0.91943 0.93746 0.87791 1.91493 1.67446 1.96446 1.56305 1.20995 1.00908 0.99970 0.99294 1.17123 0.94185 0.83586 0.92993 1.91600 1.81035 1.53210 1.83897 1.21006 0.90884 0.90008 0.95663 1.23110 1.07401 1.02108 0.91296 1.23270 1.01028 0.98906 1.02402 0.93213 0.95051 0.87076 0.79597 0.84219 0.84390 0.83770 0.89896 0.88443 0.90913 0.91076 0.89784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.49 11.33 55.49 0.63 -23.86 16 2 C 0.02 0.43 4.97 -17.43 -0.09 0.34 16 3 Si 0.90 21.41 29.61 -169.99 -5.03 16.38 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.26 -6.88 8.21 -15.06 -0.12 -7.01 16 8 H 0.06 1.71 7.14 -52.49 -0.37 1.34 16 9 N -0.54 -12.81 2.76 -165.66 -0.46 -13.27 16 10 C 0.13 2.75 4.97 -4.04 -0.02 2.73 16 11 C 0.12 2.31 3.22 -27.88 -0.09 2.22 16 12 H 0.11 2.43 7.80 -51.93 -0.40 2.03 16 13 O -0.55 -9.34 12.55 -35.23 -0.44 -9.78 16 14 C -0.14 -2.28 5.07 -104.54 -0.53 -2.81 16 15 C -0.06 -0.81 9.30 -39.60 -0.37 -1.18 16 16 C -0.16 -1.94 10.03 -39.51 -0.40 -2.34 16 17 C 0.11 1.50 7.30 -39.43 -0.29 1.21 16 18 F -0.14 -1.81 17.27 2.25 0.04 -1.77 16 19 C -0.19 -2.77 10.01 -39.45 -0.39 -3.17 16 20 C 0.14 2.39 7.24 -39.43 -0.29 2.10 16 21 F -0.12 -2.34 16.57 2.25 0.04 -2.30 16 22 C 0.13 2.78 6.20 -67.93 -0.42 2.36 16 23 C -0.20 -3.98 9.78 -26.73 -0.26 -4.24 16 24 C -0.22 -4.13 10.18 -26.73 -0.27 -4.40 16 25 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 26 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 27 H 0.11 2.79 5.37 -51.93 -0.28 2.52 16 28 H 0.36 4.69 7.32 45.56 0.33 5.02 16 29 H 0.14 1.41 6.40 -52.49 -0.34 1.07 16 30 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 33 H 0.10 2.15 6.78 -51.93 -0.35 1.79 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 LS Contribution 313.71 15.07 4.73 4.73 Total: -1.00 -28.57 313.71 -7.54 -36.11 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -3.50 Total: 7.95 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -3.54 Total: -14.19 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.17 Total: -37.13 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.44 Total: -9.78 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.08 Total: -4.07 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.57 -7.54 -36.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299512351.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.503 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds