Wall clock time and date at job start Tue Mar 31 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00130 * 2 1 4 4 H 1.48496 * 109.47154 * 271.82213 * 3 2 1 5 5 H 1.48497 * 109.47161 * 31.82696 * 3 2 1 6 6 H 1.48504 * 109.47055 * 151.82363 * 3 2 1 7 7 C 1.38819 * 120.00162 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99053 * 344.58317 * 7 2 1 9 9 N 1.36929 * 120.00373 * 164.58214 * 7 2 1 10 10 C 1.46506 * 119.99745 * 124.48590 * 9 7 2 11 11 C 1.53005 * 109.46736 * 90.00543 * 10 9 7 12 12 H 1.09001 * 109.46970 * 59.99813 * 11 10 9 13 13 O 1.42904 * 109.47024 * 299.99744 * 11 10 9 14 14 C 1.50698 * 109.46966 * 179.97438 * 11 10 9 15 15 C 1.38237 * 119.98661 * 94.72441 * 14 11 10 16 16 C 1.38174 * 120.05259 * 180.27500 * 15 14 11 17 17 C 1.38495 * 120.02604 * 0.02562 * 16 15 14 18 18 F 1.35106 * 120.01501 * 180.02562 * 17 16 15 19 19 C 1.38400 * 119.97615 * 359.97438 * 17 16 15 20 20 C 1.38439 * 119.94339 * 0.02562 * 19 17 16 21 21 F 1.35101 * 120.00864 * 180.02562 * 20 19 17 22 22 C 1.46495 * 120.00421 * 304.49404 * 9 7 2 23 23 C 1.53004 * 117.49449 * 3.04609 * 22 9 7 24 24 C 1.53000 * 117.49541 * 294.38894 * 22 9 7 25 25 H 0.97001 * 119.99860 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47297 * 330.00530 * 10 9 7 27 27 H 1.09004 * 109.47033 * 209.99961 * 10 9 7 28 28 H 0.96696 * 113.99616 * 300.00365 * 13 11 10 29 29 H 1.08006 * 119.96929 * 0.27565 * 15 14 11 30 30 H 1.08003 * 119.98965 * 180.02562 * 16 15 14 31 31 H 1.07995 * 120.02929 * 180.02562 * 19 17 16 32 32 H 1.09001 * 115.55261 * 148.71690 * 22 9 7 33 33 H 1.08997 * 117.49914 * 0.02562 * 23 22 9 34 34 H 1.09004 * 117.49624 * 145.02446 * 23 22 9 35 35 H 1.09003 * 117.49995 * 214.97594 * 24 22 9 36 36 H 1.08997 * 117.50150 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4591 2.0686 -1.3993 5 1 1.4675 2.6412 0.7383 6 1 3.5665 1.4293 0.6611 7 6 2.0103 -1.2022 -0.0005 8 1 1.4993 -2.1207 0.2477 9 7 3.3426 -1.2234 -0.3158 10 6 4.3073 -1.8082 0.6190 11 6 4.4736 -3.2984 0.3144 12 1 4.8355 -3.4224 -0.7063 13 8 3.2133 -3.9571 0.4562 14 6 5.4663 -3.8998 1.2755 15 6 5.0231 -4.5172 2.4302 16 6 5.9324 -5.0641 3.3152 17 6 7.2893 -4.9938 3.0465 18 9 8.1782 -5.5291 3.9118 19 6 7.7342 -4.3759 1.8908 20 6 6.8221 -3.8283 1.0049 21 9 7.2550 -3.2254 -0.1239 22 6 3.8035 -0.6613 -1.5877 23 6 2.7576 -0.0014 -2.4886 24 6 3.3525 -1.3585 -2.8728 25 1 -0.4850 0.8401 0.0004 26 1 3.9453 -1.6842 1.6396 27 1 5.2685 -1.3058 0.5108 28 1 2.8308 -3.8877 1.3416 29 1 3.9652 -4.5721 2.6407 30 1 5.5850 -5.5466 4.2169 31 1 8.7920 -4.3210 1.6802 32 1 4.8031 -0.2268 -1.5749 33 1 1.7268 0.0149 -2.1347 34 1 3.0693 0.8671 -3.0689 35 1 4.0553 -1.3822 -3.7057 36 1 2.7133 -2.2355 -2.7719 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299512353.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:36 Heat of formation + Delta-G solvation = -58.742415 kcal Electronic energy + Delta-G solvation = -22508.439475 eV Core-core repulsion = 18823.585731 eV Total energy + Delta-G solvation = -3684.853744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.12539 -49.00453 -39.38444 -37.50012 -36.15915 -32.80272 -31.87583 -31.04744 -30.77210 -27.36153 -24.35109 -23.25553 -22.79541 -21.52360 -21.13768 -19.76417 -18.40440 -17.33256 -17.06462 -16.64718 -16.06227 -15.81576 -15.41622 -15.29062 -14.88432 -14.64681 -14.44752 -14.19862 -14.05881 -13.41243 -13.10729 -12.64962 -12.53857 -12.18089 -11.86918 -11.78551 -11.52704 -11.17271 -10.84616 -10.65974 -10.45530 -10.39601 -9.94808 -9.79598 -9.38946 -9.18601 -9.11629 -8.69093 -8.38940 -6.44032 -6.00898 -3.70791 0.84750 0.89664 3.25025 3.38226 3.47160 3.53955 3.76023 4.31556 4.46507 4.48863 4.52875 4.68625 4.83593 4.89260 5.05262 5.17488 5.31808 5.53840 5.66797 5.75772 5.83357 5.84792 5.87693 5.93784 6.04978 6.12213 6.17245 6.39332 6.54303 6.60329 6.63067 6.67756 7.06716 7.33519 8.07746 8.13468 8.56389 8.99243 9.63725 10.12476 11.07650 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.024942 B = 0.004939 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.343328 B = 5667.916236 C = 5997.146246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.305 1.305 6 H -0.273 1.273 7 C -0.279 4.279 8 H 0.079 0.921 9 N -0.562 5.562 10 C 0.129 3.871 11 C 0.128 3.872 12 H 0.105 0.895 13 O -0.534 6.534 14 C -0.145 4.145 15 C -0.057 4.057 16 C -0.159 4.159 17 C 0.116 3.884 18 F -0.136 7.136 19 C -0.191 4.191 20 C 0.133 3.867 21 F -0.127 7.127 22 C 0.105 3.895 23 C -0.196 4.196 24 C -0.211 4.211 25 H 0.264 0.736 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.368 0.632 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 -7.673 4.467 15.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.147 4.147 3 Si 0.710 3.290 4 H -0.196 1.196 5 H -0.233 1.233 6 H -0.198 1.198 7 C -0.408 4.408 8 H 0.096 0.904 9 N -0.280 5.280 10 C 0.002 3.998 11 C 0.065 3.935 12 H 0.122 0.878 13 O -0.339 6.339 14 C -0.147 4.147 15 C -0.075 4.075 16 C -0.178 4.178 17 C 0.096 3.904 18 F -0.115 7.115 19 C -0.211 4.211 20 C 0.113 3.887 21 F -0.105 7.105 22 C -0.003 4.003 23 C -0.234 4.234 24 C -0.252 4.252 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.216 0.784 29 H 0.163 0.837 30 H 0.159 0.841 31 H 0.163 0.837 32 H 0.104 0.896 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.052 -7.684 3.859 15.630 hybrid contribution 0.699 1.088 0.432 1.363 sum 13.752 -6.596 4.291 15.844 Atomic orbital electron populations 1.69864 1.06226 1.27008 1.50517 1.25887 0.94978 0.98465 0.95358 0.86857 0.80114 0.83783 0.78278 1.19588 1.23300 1.19757 1.18656 0.82929 0.93391 1.45801 0.90394 1.43402 1.04087 1.67663 1.12891 1.21546 0.93446 0.90159 0.94692 1.21635 0.81272 0.93807 0.96744 0.87771 1.86666 1.34445 1.76551 1.36216 1.21167 0.93809 1.00931 0.98817 1.20716 1.00530 0.94666 0.91564 1.21168 0.90989 1.03628 1.01992 1.17269 0.86930 0.97596 0.88556 1.91513 1.67865 1.83878 1.68225 1.20972 1.01160 1.03895 0.95066 1.17080 0.91508 0.96195 0.83878 1.91537 1.90166 1.80667 1.48177 1.21348 0.95015 1.00067 0.83854 1.23500 1.01810 0.94511 1.03610 1.23370 1.04630 0.96891 1.00293 0.92595 0.91859 0.93653 0.78428 0.83687 0.84086 0.83681 0.89647 0.86191 0.90826 0.91178 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.97 55.49 0.78 -25.37 16 2 C 0.06 1.52 3.73 -17.43 -0.07 1.45 16 3 Si 0.88 21.65 24.89 -169.99 -4.23 17.42 16 4 H -0.27 -6.39 5.79 56.52 0.33 -6.07 16 5 H -0.31 -7.69 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.28 -7.31 8.73 -15.06 -0.13 -7.44 16 8 H 0.08 2.24 7.39 -52.49 -0.39 1.85 16 9 N -0.56 -12.66 2.00 -165.66 -0.33 -13.00 16 10 C 0.13 2.41 5.41 -4.04 -0.02 2.38 16 11 C 0.13 2.11 3.25 -27.88 -0.09 2.02 16 12 H 0.10 1.86 7.78 -51.93 -0.40 1.46 16 13 O -0.53 -9.42 11.78 -35.23 -0.42 -9.84 16 14 C -0.14 -1.98 5.07 -104.55 -0.53 -2.51 16 15 C -0.06 -0.65 9.30 -39.61 -0.37 -1.01 16 16 C -0.16 -1.65 10.02 -39.51 -0.40 -2.04 16 17 C 0.12 1.30 7.30 -39.43 -0.29 1.02 16 18 F -0.14 -1.54 17.27 2.25 0.04 -1.51 16 19 C -0.19 -2.20 10.01 -39.45 -0.39 -2.60 16 20 C 0.13 1.76 7.24 -39.43 -0.29 1.48 16 21 F -0.13 -1.81 16.56 2.25 0.04 -1.77 16 22 C 0.10 2.24 5.16 -67.93 -0.35 1.89 16 23 C -0.20 -4.33 6.69 -26.69 -0.18 -4.50 16 24 C -0.21 -4.28 10.36 -26.69 -0.28 -4.55 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 27 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 28 H 0.37 5.43 7.32 45.56 0.33 5.77 16 29 H 0.15 1.40 6.41 -52.48 -0.34 1.07 16 30 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.12 3.06 5.08 -51.93 -0.26 2.80 16 34 H 0.07 1.49 7.86 -51.93 -0.41 1.08 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -29.47 305.56 -6.52 -35.99 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -3.63 Total: 7.89 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -3.38 Total: -14.43 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.44 Total: -38.36 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.42 Total: -9.84 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.08 Total: -3.28 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.23 Total: 17.42 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.47 -6.52 -35.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299512353.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.748 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds