Wall clock time and date at job start Tue Mar 31 2020 05:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31607 * 1 3 3 Si 1.86802 * 120.00089 * 2 1 4 4 H 1.48500 * 109.47362 * 269.99745 * 3 2 1 5 5 H 1.48504 * 109.46969 * 29.99622 * 3 2 1 6 6 H 1.48497 * 109.47598 * 149.99669 * 3 2 1 7 7 C 1.38813 * 120.00330 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99980 * 160.38042 * 7 2 1 9 9 N 1.36932 * 119.99887 * 340.38247 * 7 2 1 10 10 C 1.46504 * 119.99926 * 320.44706 * 9 7 2 11 11 C 1.50702 * 109.47016 * 269.99429 * 10 9 7 12 12 C 1.38259 * 119.94555 * 269.72777 * 11 10 9 13 13 C 1.38149 * 120.05092 * 179.71930 * 12 11 10 14 14 C 1.38730 * 119.94465 * 0.57839 * 13 12 11 15 15 O 1.35905 * 120.05654 * 179.67819 * 14 13 12 16 16 C 1.42900 * 116.99859 * 0.02562 * 15 14 13 17 17 F 1.39905 * 109.47339 * 300.00072 * 16 15 14 18 18 F 1.39900 * 109.47474 * 59.99710 * 16 15 14 19 19 C 1.38726 * 119.88915 * 359.69532 * 14 13 12 20 20 C 1.38139 * 119.94659 * 0.02562 * 19 14 13 21 21 C 1.46503 * 120.00240 * 140.44269 * 9 7 2 22 22 C 1.52998 * 117.49748 * 3.29006 * 21 9 7 23 23 C 1.53000 * 60.00195 * 252.50949 * 22 21 9 24 24 H 0.97004 * 120.00303 * 355.02648 * 1 2 3 25 25 H 1.09000 * 109.47037 * 149.99840 * 10 9 7 26 26 H 1.09001 * 109.47285 * 30.00010 * 10 9 7 27 27 H 1.07997 * 119.97555 * 359.97438 * 12 11 10 28 28 H 1.08005 * 120.02414 * 180.24757 * 13 12 11 29 29 H 1.09001 * 109.47065 * 180.02562 * 16 15 14 30 30 H 1.08003 * 120.02666 * 179.97438 * 19 14 13 31 31 H 1.07999 * 119.97906 * 180.02562 * 20 19 14 32 32 H 1.08998 * 115.55081 * 148.99414 * 21 9 7 33 33 H 1.09004 * 117.50038 * 359.97438 * 22 21 9 34 34 H 1.09000 * 117.50281 * 145.01568 * 22 21 9 35 35 H 1.08994 * 117.50051 * 252.51153 * 23 22 21 36 36 H 1.09003 * 117.51808 * 107.47937 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0431 -1.2293 -0.3135 9 7 1.3852 -2.3534 0.3992 10 6 0.4631 -2.3299 1.5374 11 6 1.2263 -2.6032 2.8079 12 6 1.3748 -3.9020 3.2580 13 6 2.0790 -4.1555 4.4192 14 6 2.6270 -3.1045 5.1402 15 8 3.3145 -3.3508 6.2863 16 6 3.4348 -4.7163 6.6900 17 9 2.1604 -5.2568 6.8926 18 9 4.0954 -5.4412 5.6922 19 6 2.4717 -1.8018 4.6894 20 6 1.7717 -1.5540 3.5246 21 6 1.6385 -3.6087 -0.3125 22 6 2.6691 -3.5842 -1.4430 23 6 1.1787 -3.7001 -1.7690 24 1 -0.4851 0.8369 0.0728 25 1 -0.3016 -3.0947 1.4014 26 1 -0.0102 -1.3502 1.6015 27 1 0.9436 -4.7194 2.6991 28 1 2.1981 -5.1706 4.7683 29 1 4.0045 -4.7721 7.6176 30 1 2.8970 -0.9819 5.2491 31 1 1.6508 -0.5400 3.1729 32 1 1.5762 -4.5130 0.2927 33 1 3.1584 -2.6341 -1.6575 34 1 3.2853 -4.4725 -1.5817 35 1 0.8143 -4.6648 -2.1221 36 1 0.6875 -2.8265 -2.1975 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299528775.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:31 Heat of formation + Delta-G solvation = -71.255081 kcal Electronic energy + Delta-G solvation = -22327.505638 eV Core-core repulsion = 18642.109304 eV Total energy + Delta-G solvation = -3685.396334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.35725 -47.35430 -39.61838 -37.61907 -36.54298 -33.52658 -31.36879 -30.51387 -29.31287 -26.50900 -25.05296 -23.49379 -22.39861 -21.38528 -20.86366 -19.74670 -18.79748 -18.01915 -17.91549 -16.46798 -15.87172 -15.40761 -14.93664 -14.70370 -14.48237 -14.38377 -13.88742 -13.77981 -13.66266 -13.54981 -13.06453 -12.80938 -12.72818 -12.38269 -11.92981 -11.60757 -11.35398 -11.01891 -10.78871 -10.67665 -10.60491 -10.31181 -10.11270 -9.84574 -9.61444 -9.28726 -8.53707 -8.48612 -7.76595 -6.57388 -5.84131 -3.48799 1.84641 1.85345 2.67488 3.30306 3.39227 3.42849 3.45306 4.19079 4.25929 4.43183 4.62762 4.95536 5.17710 5.25821 5.28237 5.37350 5.65861 5.82062 5.91683 5.98292 6.07345 6.14875 6.27104 6.38602 6.51615 6.61845 6.64411 6.68713 6.91525 7.03577 7.05978 7.24502 7.30478 7.52651 7.61778 7.76119 8.45595 9.09570 9.70398 10.29724 11.11152 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.019028 B = 0.005204 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.147189 B = 5379.696457 C = 6190.630047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.016 3.984 3 Si 0.891 3.109 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.254 4.254 8 H 0.063 0.937 9 N -0.543 5.543 10 C 0.180 3.820 11 C -0.089 4.089 12 C -0.087 4.087 13 C -0.192 4.192 14 C 0.075 3.925 15 O -0.326 6.326 16 C 0.412 3.588 17 F -0.202 7.202 18 F -0.201 7.201 19 C -0.136 4.136 20 C -0.066 4.066 21 C 0.121 3.879 22 C -0.195 4.195 23 C -0.219 4.219 24 H 0.256 0.744 25 H 0.038 0.962 26 H 0.103 0.897 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.175 0.825 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 -8.055 11.554 14.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.185 4.185 3 Si 0.719 3.281 4 H -0.211 1.211 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.259 5.259 10 C 0.054 3.946 11 C -0.092 4.092 12 C -0.106 4.106 13 C -0.210 4.210 14 C 0.032 3.968 15 O -0.244 6.244 16 C 0.321 3.679 17 F -0.184 7.184 18 F -0.183 7.183 19 C -0.155 4.155 20 C -0.085 4.085 21 C 0.012 3.988 22 C -0.234 4.234 23 C -0.260 4.260 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.121 0.879 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.191 0.809 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.207 -7.780 11.578 14.570 hybrid contribution 0.481 0.495 -0.165 0.709 sum 4.687 -7.286 11.413 14.329 Atomic orbital electron populations 1.70050 1.05490 1.26308 1.50395 1.25209 0.94965 0.98717 0.99635 0.86507 0.79750 0.83747 0.78090 1.21101 1.21288 1.20095 1.18995 0.93309 0.85088 1.41006 0.91985 1.43269 1.51148 1.03272 1.28164 1.19978 0.89923 1.03254 0.81433 1.21256 0.98638 0.92038 0.97299 1.20853 0.97935 0.96930 0.94840 1.21335 1.03542 0.97556 0.98598 1.18718 0.96754 0.94966 0.86326 1.86544 1.71608 1.25218 1.41027 1.23234 0.78567 0.75991 0.90100 1.93085 1.43702 1.86428 1.95197 1.93094 1.80780 1.78699 1.65712 1.20394 1.03339 0.93278 0.98494 1.20967 0.95177 1.00101 0.92288 1.21201 1.00726 0.90431 0.86393 1.23016 0.92196 1.01812 1.06330 1.23343 0.96814 1.00970 1.04847 0.93411 0.94344 0.87900 0.86378 0.86025 0.80874 0.85836 0.85128 0.89707 0.88476 0.90865 0.91281 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.05 11.50 55.49 0.64 -23.41 16 2 C 0.02 0.41 4.98 -17.44 -0.09 0.32 16 3 Si 0.89 20.70 29.60 -169.99 -5.03 15.67 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.25 -6.62 8.47 -15.06 -0.13 -6.74 16 8 H 0.06 1.65 6.75 -52.49 -0.35 1.30 16 9 N -0.54 -12.99 2.73 -167.02 -0.46 -13.45 16 10 C 0.18 4.03 5.46 -5.19 -0.03 4.00 16 11 C -0.09 -1.79 5.46 -104.60 -0.57 -2.36 16 12 C -0.09 -1.57 9.69 -39.61 -0.38 -1.95 16 13 C -0.19 -3.26 8.26 -39.43 -0.33 -3.58 16 14 C 0.07 1.26 6.48 -39.22 -0.25 1.01 16 15 O -0.33 -4.62 10.43 -19.44 -0.20 -4.82 16 16 C 0.41 4.38 5.98 101.05 0.60 4.98 16 17 F -0.20 -2.45 15.58 2.25 0.04 -2.42 16 18 F -0.20 -2.53 15.58 2.25 0.04 -2.50 16 19 C -0.14 -2.38 9.99 -39.44 -0.39 -2.77 16 20 C -0.07 -1.29 9.69 -39.60 -0.38 -1.68 16 21 C 0.12 2.59 6.56 -67.93 -0.45 2.14 16 22 C -0.20 -3.90 9.80 -26.73 -0.26 -4.17 16 23 C -0.22 -4.47 10.36 -26.73 -0.28 -4.75 16 24 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 25 H 0.04 0.82 8.01 -51.93 -0.42 0.41 16 26 H 0.10 2.57 5.54 -51.93 -0.29 2.28 16 27 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 28 H 0.12 1.90 5.10 -52.48 -0.27 1.63 16 29 H 0.17 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.12 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.13 2.62 8.06 -52.49 -0.42 2.20 16 32 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.10 2.11 6.47 -51.93 -0.34 1.78 16 34 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 2.16 8.14 -51.93 -0.42 1.73 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -28.82 312.99 -7.38 -36.20 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.18 Total: 5.56 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -2.94 Total: -15.54 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.18 Total: -36.86 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.20 Total: -4.82 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.07 Total: -4.92 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.82 -7.38 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299528775.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.056 kcal (2) G-P(sol) polarization free energy of solvation -28.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds