Wall clock time and date at job start Tue Mar 31 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48500 * 109.47045 * 84.03110 * 3 2 1 5 5 H 1.48493 * 109.47163 * 204.03343 * 3 2 1 6 6 H 1.48506 * 109.46828 * 324.03356 * 3 2 1 7 7 C 1.38812 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99952 * 21.23863 * 7 2 1 9 9 N 1.36932 * 119.99893 * 201.23734 * 7 2 1 10 10 C 1.46499 * 120.00368 * 40.69082 * 9 7 2 11 11 C 1.52999 * 109.46934 * 89.99735 * 10 9 7 12 12 H 1.08993 * 109.47263 * 305.00050 * 11 10 9 13 13 O 1.42893 * 109.46878 * 65.00743 * 11 10 9 14 14 C 1.50704 * 109.47003 * 185.00279 * 11 10 9 15 15 C 1.38418 * 120.02391 * 284.73107 * 14 11 10 16 16 F 1.35102 * 120.01466 * 359.97438 * 15 14 11 17 17 C 1.38484 * 119.97423 * 179.75117 * 15 14 11 18 18 C 1.38210 * 120.02096 * 0.52098 * 17 15 14 19 19 C 1.38209 * 120.05137 * 359.74739 * 18 17 15 20 20 C 1.38421 * 120.02572 * 104.99984 * 14 11 10 21 21 F 1.35099 * 120.01107 * 0.02562 * 20 14 11 22 22 C 1.46503 * 120.00062 * 220.69130 * 9 7 2 23 23 C 1.53005 * 117.49780 * 14.25641 * 22 9 7 24 24 C 1.52998 * 117.49888 * 305.59986 * 22 9 7 25 25 H 0.96999 * 119.99681 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47207 * 210.00278 * 10 9 7 27 27 H 1.09004 * 109.46714 * 330.00164 * 10 9 7 28 28 H 0.96703 * 114.00878 * 59.99690 * 13 11 10 29 29 H 1.07991 * 119.99116 * 180.27166 * 17 15 14 30 30 H 1.07997 * 119.97018 * 179.73237 * 18 17 15 31 31 H 1.08005 * 119.98614 * 180.02562 * 19 18 17 32 32 H 1.09001 * 115.55346 * 159.92272 * 22 9 7 33 33 H 1.08999 * 117.49924 * 359.97438 * 23 22 9 34 34 H 1.08996 * 117.49585 * 145.02291 * 23 22 9 35 35 H 1.09002 * 117.49800 * 214.98527 * 24 22 9 36 36 H 1.09006 * 117.49925 * 359.96583 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3717 2.1192 1.3925 5 1 3.6051 1.4070 -0.5702 6 1 1.5164 2.6130 -0.8223 7 6 2.0103 -1.2022 0.0005 8 1 1.5253 -2.1058 -0.3379 9 7 3.3098 -1.2422 0.4301 10 6 3.7173 -0.4674 1.6048 11 6 3.5436 -1.3199 2.8633 12 1 2.5176 -1.6836 2.9171 13 8 4.4409 -2.4309 2.8136 14 6 3.8451 -0.4850 4.0812 15 6 5.1557 -0.1765 4.4023 16 9 6.1655 -0.6243 3.6244 17 6 5.4313 0.5951 5.5187 18 6 4.3989 1.0482 6.3182 19 6 3.0902 0.7361 6.0015 20 6 2.8120 -0.0306 4.8825 21 9 1.5327 -0.3359 4.5736 22 6 4.2928 -2.0600 -0.2850 23 6 3.9080 -2.5737 -1.6739 24 6 3.9658 -3.5406 -0.4887 25 1 -0.4849 0.8401 -0.0004 26 1 4.7631 -0.1774 1.5038 27 1 3.0983 0.4263 1.6831 28 1 5.3739 -2.1813 2.7645 29 1 6.4534 0.8396 5.7671 30 1 4.6150 1.6462 7.1910 31 1 2.2842 1.0911 6.6268 32 1 5.3365 -1.7933 -0.1184 33 1 2.9233 -2.3036 -2.0553 34 1 4.6986 -2.6454 -2.4208 35 1 4.7944 -4.2481 -0.4563 36 1 3.0195 -3.9065 -0.0901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299553875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:34 Heat of formation + Delta-G solvation = -57.867661 kcal Electronic energy + Delta-G solvation = -23180.724199 eV Core-core repulsion = 19495.908387 eV Total energy + Delta-G solvation = -3684.815812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.16145 -48.79203 -39.07854 -37.55792 -36.13197 -33.37519 -31.77696 -30.99150 -30.32141 -27.32912 -24.52364 -23.18420 -22.83774 -21.35450 -21.32846 -19.75825 -18.16248 -17.53294 -16.99534 -16.36333 -15.89157 -15.58455 -15.45597 -15.29839 -15.07089 -15.00902 -14.36796 -14.22825 -13.79173 -13.44246 -12.78998 -12.50246 -12.40491 -12.22762 -11.99129 -11.95253 -11.73012 -11.10765 -10.83471 -10.60046 -10.56134 -10.29708 -10.01417 -9.70024 -9.53050 -9.27952 -8.86845 -8.77332 -8.51670 -6.65972 -6.06345 -3.50697 0.91940 0.95976 3.23622 3.31083 3.40581 3.47086 3.88406 4.38366 4.42188 4.47756 4.64094 4.69073 4.91992 4.95665 5.06795 5.11755 5.30333 5.64160 5.70427 5.80980 5.83919 5.88287 5.92283 5.98057 6.06132 6.08958 6.14071 6.40892 6.51865 6.56207 6.65195 6.75910 7.00882 7.20718 7.99031 8.09036 8.38224 8.92923 9.63642 10.04903 11.08152 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.007825 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.586810 B = 3577.510606 C = 4420.757773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.043 3.957 3 Si 0.869 3.131 4 H -0.286 1.286 5 H -0.266 1.266 6 H -0.297 1.297 7 C -0.271 4.271 8 H 0.082 0.918 9 N -0.561 5.561 10 C 0.120 3.880 11 C 0.127 3.873 12 H 0.123 0.877 13 O -0.543 6.543 14 C -0.177 4.177 15 C 0.128 3.872 16 F -0.129 7.129 17 C -0.165 4.165 18 C -0.072 4.072 19 C -0.164 4.164 20 C 0.140 3.860 21 F -0.119 7.119 22 C 0.128 3.872 23 C -0.198 4.198 24 C -0.208 4.208 25 H 0.265 0.735 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.362 0.638 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.028 2.053 11.487 16.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.158 4.158 3 Si 0.699 3.301 4 H -0.214 1.214 5 H -0.190 1.190 6 H -0.225 1.225 7 C -0.399 4.399 8 H 0.099 0.901 9 N -0.278 5.278 10 C -0.007 4.007 11 C 0.065 3.935 12 H 0.140 0.860 13 O -0.350 6.350 14 C -0.180 4.180 15 C 0.108 3.892 16 F -0.108 7.108 17 C -0.184 4.184 18 C -0.090 4.090 19 C -0.183 4.183 20 C 0.120 3.880 21 F -0.097 7.097 22 C 0.020 3.980 23 C -0.236 4.236 24 C -0.248 4.248 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.211 0.789 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.269 1.810 11.423 15.467 hybrid contribution 0.743 1.230 -0.161 1.446 sum 11.012 3.040 11.262 16.042 Atomic orbital electron populations 1.69855 1.05927 1.26857 1.50417 1.25510 0.95051 0.97672 0.97614 0.87001 0.81115 0.84898 0.77119 1.21354 1.19044 1.22456 1.18667 0.85494 0.94331 1.41426 0.90067 1.43491 1.06709 1.52412 1.25188 1.21832 0.98271 0.94262 0.86292 1.21686 0.95856 0.86717 0.89267 0.85978 1.86651 1.19473 1.32386 1.96473 1.21093 0.91776 1.04095 1.01058 1.17167 0.83384 0.97569 0.91056 1.91368 1.58699 1.87077 1.73631 1.21129 1.01197 1.00810 0.95239 1.20769 0.90988 0.98242 0.99011 1.21233 0.98542 1.01006 0.97550 1.17250 0.78965 0.97412 0.94334 1.91596 1.34678 1.90905 1.92533 1.20995 0.91762 0.90949 0.94278 1.23181 1.03128 1.05658 0.91680 1.23237 1.02400 0.95140 1.04063 0.92526 0.93533 0.91841 0.78892 0.84178 0.84112 0.84032 0.89446 0.87937 0.90680 0.90829 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.97 55.49 0.78 -26.09 16 2 C 0.04 1.23 5.30 -17.43 -0.09 1.14 16 3 Si 0.87 22.03 25.10 -169.99 -4.27 17.77 16 4 H -0.29 -7.05 6.72 56.52 0.38 -6.67 16 5 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 7 C -0.27 -7.49 8.39 -15.06 -0.13 -7.62 16 8 H 0.08 2.45 7.50 -52.49 -0.39 2.06 16 9 N -0.56 -13.43 2.34 -165.66 -0.39 -13.82 16 10 C 0.12 2.63 4.13 -4.04 -0.02 2.61 16 11 C 0.13 2.54 3.28 -27.88 -0.09 2.45 16 12 H 0.12 2.81 7.27 -51.93 -0.38 2.43 16 13 O -0.54 -10.38 12.79 -35.23 -0.45 -10.83 16 14 C -0.18 -3.02 4.98 -104.49 -0.52 -3.54 16 15 C 0.13 1.84 7.04 -39.42 -0.28 1.56 16 16 F -0.13 -1.82 14.11 2.25 0.03 -1.79 16 17 C -0.16 -1.84 10.03 -39.50 -0.40 -2.23 16 18 C -0.07 -0.72 10.04 -39.60 -0.40 -1.12 16 19 C -0.16 -2.02 10.02 -39.51 -0.40 -2.41 16 20 C 0.14 2.29 7.25 -39.43 -0.29 2.01 16 21 F -0.12 -2.23 16.27 2.25 0.04 -2.20 16 22 C 0.13 2.69 6.21 -67.93 -0.42 2.27 16 23 C -0.20 -3.94 9.83 -26.69 -0.26 -4.21 16 24 C -0.21 -4.09 10.10 -26.70 -0.27 -4.36 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.05 0.93 7.67 -51.93 -0.40 0.53 16 27 H 0.06 1.52 3.62 -51.93 -0.19 1.33 16 28 H 0.36 5.92 6.34 45.56 0.29 6.21 16 29 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 30 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 32 H 0.09 1.64 8.10 -51.93 -0.42 1.22 16 33 H 0.10 2.30 7.02 -51.93 -0.36 1.93 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.09 1.94 7.97 -51.93 -0.41 1.53 16 LS Contribution 306.36 15.07 4.62 4.62 Total: -1.00 -30.81 306.36 -6.74 -37.55 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -3.54 Total: 8.25 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -3.55 Total: -13.46 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.39 Total: -39.91 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: -0.45 Total: -10.83 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.07 Total: -3.98 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.27 Total: 17.77 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.81 -6.74 -37.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299553875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.320 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds