Wall clock time and date at job start Tue Mar 31 2020 05:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00124 * 2 1 4 4 H 1.48500 * 109.47045 * 84.03110 * 3 2 1 5 5 H 1.48493 * 109.47163 * 204.03343 * 3 2 1 6 6 H 1.48506 * 109.46828 * 324.03356 * 3 2 1 7 7 C 1.38812 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99952 * 21.23863 * 7 2 1 9 9 N 1.36932 * 119.99893 * 201.23734 * 7 2 1 10 10 C 1.46499 * 120.00368 * 40.69082 * 9 7 2 11 11 C 1.52999 * 109.46934 * 89.99735 * 10 9 7 12 12 H 1.08993 * 109.47263 * 305.00050 * 11 10 9 13 13 O 1.42893 * 109.46878 * 65.00743 * 11 10 9 14 14 C 1.50704 * 109.47003 * 185.00279 * 11 10 9 15 15 C 1.38418 * 120.02391 * 284.73107 * 14 11 10 16 16 F 1.35102 * 120.01466 * 359.97438 * 15 14 11 17 17 C 1.38484 * 119.97423 * 179.75117 * 15 14 11 18 18 C 1.38210 * 120.02096 * 0.52098 * 17 15 14 19 19 C 1.38209 * 120.05137 * 359.74739 * 18 17 15 20 20 C 1.38421 * 120.02572 * 104.99984 * 14 11 10 21 21 F 1.35099 * 120.01107 * 0.02562 * 20 14 11 22 22 C 1.46503 * 120.00062 * 220.69130 * 9 7 2 23 23 C 1.53005 * 117.49780 * 14.25641 * 22 9 7 24 24 C 1.52998 * 117.49888 * 305.59986 * 22 9 7 25 25 H 0.96999 * 119.99681 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47207 * 210.00278 * 10 9 7 27 27 H 1.09004 * 109.46714 * 330.00164 * 10 9 7 28 28 H 0.96703 * 114.00878 * 59.99690 * 13 11 10 29 29 H 1.07991 * 119.99116 * 180.27166 * 17 15 14 30 30 H 1.07997 * 119.97018 * 179.73237 * 18 17 15 31 31 H 1.08005 * 119.98614 * 180.02562 * 19 18 17 32 32 H 1.09001 * 115.55346 * 159.92272 * 22 9 7 33 33 H 1.08999 * 117.49924 * 359.97438 * 23 22 9 34 34 H 1.08996 * 117.49585 * 145.02291 * 23 22 9 35 35 H 1.09002 * 117.49800 * 214.98527 * 24 22 9 36 36 H 1.09006 * 117.49925 * 359.96583 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3717 2.1192 1.3925 5 1 3.6051 1.4070 -0.5702 6 1 1.5164 2.6130 -0.8223 7 6 2.0103 -1.2022 0.0005 8 1 1.5253 -2.1058 -0.3379 9 7 3.3098 -1.2422 0.4301 10 6 3.7173 -0.4674 1.6048 11 6 3.5436 -1.3199 2.8633 12 1 2.5176 -1.6836 2.9171 13 8 4.4409 -2.4309 2.8136 14 6 3.8451 -0.4850 4.0812 15 6 5.1557 -0.1765 4.4023 16 9 6.1655 -0.6243 3.6244 17 6 5.4313 0.5951 5.5187 18 6 4.3989 1.0482 6.3182 19 6 3.0902 0.7361 6.0015 20 6 2.8120 -0.0306 4.8825 21 9 1.5327 -0.3359 4.5736 22 6 4.2928 -2.0600 -0.2850 23 6 3.9080 -2.5737 -1.6739 24 6 3.9658 -3.5406 -0.4887 25 1 -0.4849 0.8401 -0.0004 26 1 4.7631 -0.1774 1.5038 27 1 3.0983 0.4263 1.6831 28 1 5.3739 -2.1813 2.7645 29 1 6.4534 0.8396 5.7671 30 1 4.6150 1.6462 7.1910 31 1 2.2842 1.0911 6.6268 32 1 5.3365 -1.7933 -0.1184 33 1 2.9233 -2.3036 -2.0553 34 1 4.6986 -2.6454 -2.4208 35 1 4.7944 -4.2481 -0.4563 36 1 3.0195 -3.9065 -0.0901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299553875.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:33 Heat of formation + Delta-G solvation = -78.470416 kcal Electronic energy + Delta-G solvation = -23181.617602 eV Core-core repulsion = 19495.908387 eV Total energy + Delta-G solvation = -3685.709214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.21799 -50.09078 -40.28242 -39.11084 -37.66608 -35.25296 -33.51030 -32.51606 -31.31274 -28.95783 -26.38862 -24.65611 -23.89283 -22.97001 -22.69700 -21.61228 -19.30758 -19.04424 -18.38489 -17.80438 -17.36520 -17.14272 -16.82322 -16.67187 -16.56081 -16.31341 -15.68137 -15.55319 -15.29253 -15.18249 -14.52537 -14.16945 -13.81453 -13.66217 -13.40819 -13.10882 -12.89646 -12.86429 -12.74714 -12.22964 -12.17561 -12.07984 -11.89408 -11.49794 -11.17678 -10.94313 -10.66057 -9.99247 -9.80345 -8.58997 -8.26984 -5.69107 -0.09749 -0.06976 1.20739 1.32170 1.44393 2.32002 2.33739 2.80977 2.86388 3.07010 3.35974 3.37650 3.40349 3.53279 3.73531 3.83925 4.07996 4.16816 4.25063 4.27175 4.41001 4.45095 4.63376 4.71160 4.74443 4.88603 4.94649 5.00320 5.04109 5.11767 5.16038 5.31351 5.54652 5.74643 5.87447 6.14436 6.69424 6.91573 7.54088 7.96574 8.91897 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016176 B = 0.007825 C = 0.006332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.586810 B = 3577.510606 C = 4420.757773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.012 4.012 3 Si 0.935 3.065 4 H -0.277 1.277 5 H -0.253 1.253 6 H -0.301 1.301 7 C -0.256 4.256 8 H 0.037 0.963 9 N -0.576 5.576 10 C 0.120 3.880 11 C 0.141 3.859 12 H 0.074 0.926 13 O -0.551 6.551 14 C -0.207 4.207 15 C 0.118 3.882 16 F -0.130 7.130 17 C -0.148 4.148 18 C -0.049 4.049 19 C -0.157 4.157 20 C 0.100 3.900 21 F -0.149 7.149 22 C 0.112 3.888 23 C -0.193 4.193 24 C -0.199 4.199 25 H 0.265 0.735 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.375 0.625 29 H 0.180 0.820 30 H 0.193 0.807 31 H 0.166 0.834 32 H 0.123 0.877 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.050 3.832 13.617 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.209 4.209 3 Si 0.762 3.238 4 H -0.204 1.204 5 H -0.177 1.177 6 H -0.229 1.229 7 C -0.386 4.386 8 H 0.054 0.946 9 N -0.294 5.294 10 C -0.005 4.005 11 C 0.079 3.921 12 H 0.092 0.908 13 O -0.360 6.360 14 C -0.210 4.210 15 C 0.099 3.901 16 F -0.108 7.108 17 C -0.166 4.166 18 C -0.066 4.066 19 C -0.176 4.176 20 C 0.081 3.919 21 F -0.127 7.127 22 C 0.005 3.995 23 C -0.231 4.231 24 C -0.239 4.239 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.227 0.773 29 H 0.198 0.802 30 H 0.210 0.790 31 H 0.184 0.816 32 H 0.141 0.859 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.342 3.576 13.568 20.064 hybrid contribution -0.448 0.567 -0.703 1.008 sum 13.894 4.143 12.865 19.383 Atomic orbital electron populations 1.69987 1.07632 1.27557 1.53231 1.26100 0.95631 1.01075 0.98136 0.85939 0.80003 0.80424 0.77384 1.20365 1.17712 1.22878 1.18400 0.87233 0.92749 1.40183 0.94562 1.43572 1.05902 1.53228 1.26685 1.21835 0.98967 0.93432 0.86315 1.21056 0.93850 0.86671 0.90548 0.90777 1.86607 1.20373 1.32401 1.96610 1.20827 0.93692 1.05645 1.00798 1.17364 0.82138 0.98403 0.92235 1.91356 1.58316 1.87235 1.73908 1.21643 1.03533 0.98307 0.93129 1.21414 0.89245 0.96474 0.99512 1.21625 1.00757 0.99304 0.95880 1.17796 0.77800 0.99784 0.96522 1.91518 1.36584 1.91548 1.93063 1.21365 0.92563 0.90948 0.94615 1.23165 1.02499 1.05262 0.92213 1.23164 1.01893 0.95293 1.03529 0.92641 0.90888 0.94027 0.77347 0.80241 0.78959 0.81631 0.85945 0.91494 0.86817 0.87252 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.14 13.97 21.65 0.30 -59.84 16 2 C -0.01 -0.72 5.30 84.86 0.45 -0.27 16 3 Si 0.93 46.82 25.10 68.60 1.72 48.55 16 4 H -0.28 -13.29 6.72 99.48 0.67 -12.62 16 5 H -0.25 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 7 C -0.26 -14.98 8.39 84.03 0.71 -14.27 16 8 H 0.04 2.40 7.50 -2.91 -0.02 2.38 16 9 N -0.58 -28.11 2.34 -678.03 -1.59 -29.70 16 10 C 0.12 5.28 4.13 86.38 0.36 5.63 16 11 C 0.14 5.82 3.28 29.85 0.10 5.92 16 12 H 0.07 3.73 7.27 -2.39 -0.02 3.71 16 13 O -0.55 -21.14 12.79 -148.98 -1.91 -23.04 16 14 C -0.21 -6.98 4.98 -19.78 -0.10 -7.07 16 15 C 0.12 3.06 7.04 22.37 0.16 3.22 16 16 F -0.13 -3.26 14.11 44.97 0.63 -2.62 16 17 C -0.15 -2.51 10.03 22.32 0.22 -2.28 16 18 C -0.05 -0.71 10.04 22.26 0.22 -0.48 16 19 C -0.16 -3.38 10.02 22.32 0.22 -3.15 16 20 C 0.10 3.28 7.25 22.37 0.16 3.44 16 21 F -0.15 -5.96 16.27 44.97 0.73 -5.23 16 22 C 0.11 4.59 6.21 44.99 0.28 4.87 16 23 C -0.19 -7.59 9.83 30.62 0.30 -7.29 16 24 C -0.20 -7.77 10.10 30.62 0.31 -7.46 16 25 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 26 H 0.07 2.77 7.67 -2.39 -0.02 2.75 16 27 H 0.04 2.01 3.62 -2.39 -0.01 2.00 16 28 H 0.38 11.77 6.34 -74.05 -0.47 11.30 16 29 H 0.18 1.70 8.06 -2.92 -0.02 1.67 16 30 H 0.19 0.91 8.06 -2.91 -0.02 0.89 16 31 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.12 4.17 8.10 -2.39 -0.02 4.15 16 33 H 0.07 3.12 7.02 -2.39 -0.02 3.11 16 34 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 35 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 36 H 0.05 2.44 7.97 -2.38 -0.02 2.42 16 Total: -1.00 -74.03 306.36 3.90 -70.13 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.61 Total: 20.95 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 3.39 Total: -19.20 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -1.29 Total: -89.53 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -1.91 Total: -23.04 kcal Atomic # 9 Polarization: -9.21 SS G_CDS: 1.37 Total: -7.85 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.72 Total: 48.55 kcal Total: -74.03 3.90 -70.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299553875.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.343 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds