Wall clock time and date at job start Tue Mar 31 2020 05:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00032 * 2 1 4 4 H 1.48501 * 109.47188 * 272.00637 * 3 2 1 5 5 H 1.48503 * 109.47569 * 32.00818 * 3 2 1 6 6 H 1.48504 * 109.47215 * 152.00674 * 3 2 1 7 7 C 1.38808 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99621 * 344.77490 * 7 2 1 9 9 N 1.36930 * 120.00287 * 164.77994 * 7 2 1 10 10 C 1.46503 * 120.00462 * 124.48131 * 9 7 2 11 11 C 1.50701 * 109.47203 * 89.99591 * 10 9 7 12 12 C 1.38157 * 120.03339 * 260.00393 * 11 10 9 13 13 C 1.38240 * 120.05792 * 180.02562 * 12 11 10 14 14 C 1.38285 * 120.11463 * 359.95387 * 13 12 11 15 15 C 1.38121 * 120.05282 * 0.02764 * 14 13 12 16 16 C 1.38712 * 120.02331 * 79.98161 * 11 10 9 17 17 O 1.35901 * 120.06151 * 0.04441 * 16 11 10 18 18 C 1.42893 * 117.00655 * 179.97438 * 17 16 11 19 19 F 1.39902 * 109.47075 * 300.00070 * 18 17 16 20 20 F 1.39904 * 109.47127 * 60.00169 * 18 17 16 21 21 C 1.46498 * 120.00071 * 304.48298 * 9 7 2 22 22 C 1.53008 * 117.49729 * 3.13328 * 21 9 7 23 23 C 1.53001 * 117.49813 * 294.47510 * 21 9 7 24 24 H 0.97001 * 119.99742 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.46946 * 330.00105 * 10 9 7 26 26 H 1.08998 * 109.47582 * 210.00314 * 10 9 7 27 27 H 1.08003 * 119.96941 * 359.97407 * 12 11 10 28 28 H 1.07999 * 119.94352 * 179.97438 * 13 12 11 29 29 H 1.07998 * 119.97446 * 179.74179 * 14 13 12 30 30 H 1.08002 * 120.03043 * 179.97438 * 15 14 13 31 31 H 1.08997 * 109.47704 * 179.97438 * 18 17 16 32 32 H 1.08994 * 115.55477 * 148.80777 * 21 9 7 33 33 H 1.08997 * 117.49655 * 0.02562 * 22 21 9 34 34 H 1.09003 * 117.49679 * 145.02457 * 22 21 9 35 35 H 1.08994 * 117.50226 * 214.97916 * 23 21 9 36 36 H 1.09008 * 117.49545 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4553 2.0709 -1.3992 5 1 1.4696 2.6401 0.7421 6 1 3.5684 1.4283 0.6572 7 6 2.0102 -1.2021 -0.0005 8 1 1.4986 -2.1211 0.2447 9 7 3.3435 -1.2228 -0.3119 10 6 4.3055 -1.8091 0.6247 11 6 4.4701 -3.2764 0.3230 12 6 3.8045 -4.2178 1.0841 13 6 3.9555 -5.5639 0.8081 14 6 4.7722 -5.9718 -0.2307 15 6 5.4395 -5.0346 -0.9949 16 6 5.2898 -3.6828 -0.7196 17 8 5.9461 -2.7588 -1.4696 18 6 6.7733 -3.2497 -2.5263 19 9 7.7681 -4.0769 -1.9939 20 9 5.9927 -3.9804 -3.4286 21 6 3.8081 -0.6587 -1.5815 22 6 2.7652 0.0044 -2.4836 23 6 3.3593 -1.3527 -2.8692 24 1 -0.4850 0.8401 0.0004 25 1 3.9405 -1.6867 1.6445 26 1 5.2670 -1.3065 0.5202 27 1 3.1662 -3.9018 1.8960 28 1 3.4346 -6.2983 1.4045 29 1 4.8918 -7.0242 -0.4417 30 1 6.0775 -5.3535 -1.8058 31 1 7.2371 -2.4104 -3.0445 32 1 4.8081 -0.2255 -1.5656 33 1 1.7336 0.0213 -2.1322 34 1 3.0794 0.8737 -3.0614 35 1 4.0639 -1.3756 -3.7004 36 1 2.7187 -2.2292 -2.7715 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299563567.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:35 Heat of formation + Delta-G solvation = -61.716575 kcal Electronic energy + Delta-G solvation = -23395.791550 eV Core-core repulsion = 19710.808836 eV Total energy + Delta-G solvation = -3684.982713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.25370 -47.24241 -39.75133 -37.27109 -36.93903 -33.36238 -32.07128 -30.15890 -29.78568 -26.10762 -25.63270 -23.40244 -22.15970 -21.49006 -21.18777 -19.67767 -18.64555 -17.87968 -17.79936 -16.73427 -15.90071 -15.66460 -15.07617 -14.68265 -14.53979 -14.28618 -13.86214 -13.62834 -13.54763 -13.49472 -13.15843 -12.85927 -12.62954 -12.33087 -11.99462 -11.80596 -11.49757 -11.39121 -10.86874 -10.69619 -10.62843 -10.34383 -10.27991 -9.77034 -9.42060 -9.07579 -8.56318 -8.34778 -7.95003 -6.42812 -5.99972 -3.69526 1.71134 1.74471 2.81240 3.40674 3.49084 3.55993 3.57047 4.07331 4.38310 4.54304 4.74416 4.96522 5.06108 5.10282 5.16045 5.36961 5.40359 5.65977 5.72894 5.93734 5.98081 6.09911 6.19959 6.22657 6.36997 6.55578 6.58139 6.65200 6.71365 6.74370 6.91493 7.10394 7.12024 7.36730 7.47712 8.11416 8.54054 9.03374 9.65322 10.16311 11.09467 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.020080 B = 0.007078 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.062734 B = 3954.808441 C = 4710.665084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.886 3.114 4 H -0.270 1.270 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.282 4.282 8 H 0.069 0.931 9 N -0.564 5.564 10 C 0.187 3.813 11 C -0.091 4.091 12 C -0.074 4.074 13 C -0.148 4.148 14 C -0.100 4.100 15 C -0.197 4.197 16 C 0.115 3.885 17 O -0.304 6.304 18 C 0.409 3.591 19 F -0.206 7.206 20 F -0.200 7.200 21 C 0.122 3.878 22 C -0.203 4.203 23 C -0.205 4.205 24 H 0.264 0.736 25 H 0.068 0.932 26 H 0.049 0.951 27 H 0.130 0.870 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.124 0.876 31 H 0.173 0.827 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.540 -6.746 -2.936 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.714 3.286 4 H -0.196 1.196 5 H -0.233 1.233 6 H -0.195 1.195 7 C -0.410 4.410 8 H 0.087 0.913 9 N -0.283 5.283 10 C 0.062 3.938 11 C -0.095 4.095 12 C -0.093 4.093 13 C -0.166 4.166 14 C -0.119 4.119 15 C -0.215 4.215 16 C 0.072 3.928 17 O -0.220 6.220 18 C 0.318 3.682 19 F -0.188 7.188 20 F -0.181 7.181 21 C 0.015 3.985 22 C -0.241 4.241 23 C -0.246 4.246 24 H 0.074 0.926 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.148 0.852 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.190 0.810 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 13.364 -6.449 -2.882 15.116 hybrid contribution 0.316 0.438 -0.449 0.702 sum 13.680 -6.011 -3.331 15.309 Atomic orbital electron populations 1.69870 1.06299 1.27065 1.50463 1.25852 0.94967 0.98574 0.95158 0.86787 0.80189 0.83424 0.78219 1.19614 1.23341 1.19481 1.18526 0.82988 0.93251 1.46276 0.91340 1.43507 1.03879 1.67613 1.13292 1.19852 0.93269 0.86368 0.94330 1.20414 0.95319 0.99785 0.93936 1.20969 0.97247 0.91963 0.99139 1.21061 1.00530 0.96082 0.98954 1.20758 0.97005 0.98621 0.95494 1.21376 1.04958 0.92039 1.03175 1.18646 0.94558 0.87110 0.92507 1.86692 1.58198 1.34287 1.42871 1.23293 0.77907 0.86731 0.80284 1.93067 1.62559 1.76041 1.87138 1.93091 1.76175 1.80576 1.68296 1.21192 0.94517 0.99270 0.83545 1.23549 1.01961 0.94512 1.04073 1.23239 1.04362 0.96441 1.00544 0.92577 0.91385 0.93238 0.85162 0.86343 0.86422 0.85831 0.81017 0.89667 0.86354 0.90911 0.91563 0.89677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.61 13.97 55.49 0.78 -25.83 16 2 C 0.06 1.59 3.74 -17.43 -0.07 1.52 16 3 Si 0.89 21.88 24.86 -169.99 -4.23 17.65 16 4 H -0.27 -6.41 5.79 56.52 0.33 -6.08 16 5 H -0.31 -7.72 7.11 56.52 0.40 -7.32 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.28 -7.64 9.17 -15.06 -0.14 -7.78 16 8 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 9 N -0.56 -13.14 2.03 -167.02 -0.34 -13.48 16 10 C 0.19 3.77 5.51 -5.19 -0.03 3.74 16 11 C -0.09 -1.70 5.48 -104.48 -0.57 -2.27 16 12 C -0.07 -1.28 9.66 -39.61 -0.38 -1.66 16 13 C -0.15 -2.24 10.04 -39.56 -0.40 -2.64 16 14 C -0.10 -1.49 10.04 -39.61 -0.40 -1.89 16 15 C -0.20 -3.15 8.26 -39.43 -0.33 -3.48 16 16 C 0.12 2.01 6.46 -39.21 -0.25 1.76 16 17 O -0.30 -4.80 8.56 -19.43 -0.17 -4.97 16 18 C 0.41 4.93 5.98 101.05 0.60 5.53 16 19 F -0.21 -2.58 15.58 2.25 0.04 -2.55 16 20 F -0.20 -2.76 15.58 2.25 0.04 -2.73 16 21 C 0.12 2.63 4.06 -67.93 -0.28 2.35 16 22 C -0.20 -4.52 6.68 -26.69 -0.18 -4.69 16 23 C -0.21 -4.23 10.36 -26.69 -0.28 -4.50 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.07 1.36 7.90 -51.93 -0.41 0.94 16 26 H 0.05 0.93 7.78 -51.93 -0.40 0.52 16 27 H 0.13 2.14 8.04 -52.48 -0.42 1.72 16 28 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.12 1.84 5.10 -52.49 -0.27 1.57 16 31 H 0.17 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.12 3.06 5.07 -51.93 -0.26 2.80 16 34 H 0.07 1.47 7.85 -51.93 -0.41 1.07 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.96 8.14 -51.92 -0.42 1.54 16 LS Contribution 302.81 15.07 4.56 4.56 Total: -1.00 -30.75 302.81 -6.35 -37.10 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.34 Total: 4.24 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.69 Total: -14.01 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.44 Total: -39.31 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.17 Total: -4.97 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 0.07 Total: -5.27 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.23 Total: 17.65 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.75 -6.35 -37.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299563567.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.612 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds