Wall clock time and date at job start Tue Mar 31 2020 06:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 C 1.53004 * 109.47088 * 119.99698 * 2 1 3 5 5 C 1.52999 * 109.46959 * 174.99485 * 4 2 1 6 6 N 1.46904 * 109.47047 * 180.02562 * 5 4 2 7 7 C 1.46901 * 111.00201 * 170.00503 * 6 5 4 8 8 C 1.50699 * 109.47159 * 199.59100 * 7 6 5 9 9 H 1.08008 * 119.99809 * 5.08033 * 8 7 6 10 10 C 1.37872 * 120.00343 * 185.08011 * 8 7 6 11 11 N 1.31522 * 119.99710 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00301 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46855 * 90.00280 * 12 10 8 14 14 H 1.48502 * 109.47184 * 209.99962 * 12 10 8 15 15 H 1.48495 * 109.47167 * 330.00004 * 12 10 8 16 16 C 1.38609 * 110.99812 * 293.95839 * 6 5 4 17 17 N 1.32966 * 120.53238 * 296.89861 * 16 6 5 18 18 C 1.31768 * 120.69537 * 180.02562 * 17 16 6 19 19 N 1.31772 * 121.85917 * 359.97438 * 18 17 16 20 20 C 1.32560 * 121.01887 * 0.02562 * 19 18 17 21 21 C 1.38203 * 119.18281 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 120.84269 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.46582 * 300.00175 * 1 2 3 24 24 H 1.08995 * 109.47136 * 59.99858 * 1 2 3 25 25 H 1.08998 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47228 * 239.99764 * 2 1 3 27 27 H 1.09002 * 109.47711 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46851 * 299.99921 * 3 2 1 29 29 H 1.08996 * 109.47059 * 59.99660 * 3 2 1 30 30 H 1.09011 * 109.46962 * 55.00063 * 4 2 1 31 31 H 1.08994 * 109.47197 * 295.00004 * 4 2 1 32 32 H 1.09004 * 109.47187 * 60.00511 * 5 4 2 33 33 H 1.08994 * 109.47590 * 300.00278 * 5 4 2 34 34 H 1.08995 * 109.46739 * 319.59014 * 7 6 5 35 35 H 1.08998 * 109.46974 * 79.58727 * 7 6 5 36 36 H 0.96994 * 119.99772 * 180.02562 * 11 10 8 37 37 H 1.07999 * 119.07078 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.40747 * 179.72529 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 7 4.0544 -1.5241 2.3872 7 6 5.4789 -1.8589 2.2571 8 6 5.8293 -2.9516 3.2339 9 1 5.0546 -3.4138 3.8278 10 6 7.1388 -3.3613 3.3694 11 7 8.0821 -2.7980 2.6465 12 14 7.5733 -4.7153 4.5807 13 1 7.4921 -6.0328 3.9004 14 1 8.9535 -4.5033 5.0859 15 1 6.6197 -4.6861 5.7186 16 6 3.8237 -0.7688 3.5263 17 7 4.4040 0.4178 3.6790 18 6 4.1873 1.1382 4.7608 19 7 3.3953 0.7205 5.7276 20 6 2.7807 -0.4514 5.6488 21 6 2.9777 -1.2420 4.5325 22 17 2.1950 -2.7845 4.3849 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.9995 0.1675 1.1420 33 1 3.8531 -1.3940 0.3003 34 1 5.6804 -2.2006 1.2419 35 1 6.0806 -0.9751 2.4691 36 1 9.0033 -3.0865 2.7415 37 1 4.6725 2.0982 4.8578 38 1 2.1372 -0.7860 6.4490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302672106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:52 Heat of formation + Delta-G solvation = 35.163448 kcal Electronic energy + Delta-G solvation = -20686.798814 eV Core-core repulsion = 17590.106565 eV Total energy + Delta-G solvation = -3096.692249 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.77804 -37.69768 -36.16987 -35.72525 -32.92305 -32.39905 -30.83329 -29.13057 -27.13649 -26.43250 -24.41353 -23.71184 -22.53332 -20.95051 -19.79248 -17.55642 -16.99882 -16.09395 -15.71261 -15.34479 -15.22067 -14.66712 -14.35843 -14.00742 -13.60925 -13.26205 -13.15538 -12.82246 -12.30724 -12.15953 -11.73894 -11.61765 -11.45534 -11.09584 -11.07002 -10.94936 -10.84750 -10.77483 -10.58834 -10.51468 -10.35999 -10.18048 -9.91152 -9.34852 -8.95167 -8.67597 -8.48354 -7.77847 -6.07527 -4.09426 1.13702 1.33868 2.48894 3.29580 3.35592 3.39785 4.00029 4.09393 4.39613 4.42794 4.57936 4.87517 4.99458 5.04324 5.27196 5.29203 5.39671 5.49040 5.62166 5.68893 5.76408 5.78651 5.88623 5.90952 6.03843 6.13590 6.23770 6.28744 6.43729 6.51559 6.57630 7.00739 7.16628 7.29945 7.65282 7.94016 7.99545 8.30937 8.37831 8.98788 9.55084 11.02822 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.006463 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.329765 B = 4331.359201 C = 4844.306783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.110 4.110 5 C 0.059 3.941 6 N -0.490 5.490 7 C 0.196 3.804 8 C -0.513 4.513 9 H 0.068 0.932 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.895 3.105 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.406 3.594 17 N -0.533 5.533 18 C 0.300 3.700 19 N -0.527 5.527 20 C 0.148 3.852 21 C -0.118 4.118 22 Cl -0.030 7.030 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.019 0.981 36 H 0.262 0.738 37 H 0.193 0.807 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 6.378 -0.765 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.068 4.068 6 N -0.214 5.214 7 C 0.074 3.926 8 C -0.551 4.551 9 H 0.086 0.914 10 C -0.143 4.143 11 N -0.535 5.535 12 Si 0.722 3.278 13 H -0.204 1.204 14 H -0.213 1.213 15 H -0.198 1.198 16 C 0.167 3.833 17 N -0.251 5.251 18 C 0.010 3.990 19 N -0.242 5.242 20 C -0.017 4.017 21 C -0.152 4.152 22 Cl -0.002 7.002 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.037 0.963 36 H 0.072 0.928 37 H 0.210 0.790 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.932 6.658 -0.706 14.563 hybrid contribution 0.518 -1.000 0.523 1.241 sum -12.415 5.658 -0.183 13.644 Atomic orbital electron populations 1.21814 0.95480 1.01603 1.01260 1.21077 0.95412 0.96286 0.98631 1.21884 1.01582 0.95985 1.01055 1.21655 0.95570 1.00768 0.96807 1.22222 0.94409 0.97670 0.92491 1.60418 1.24625 1.37510 0.98872 1.19944 0.77588 0.96720 0.98386 1.21194 0.92995 1.18773 1.22187 0.91409 1.24944 0.96255 0.96892 0.96169 1.69954 1.00902 1.42133 1.40476 0.86539 0.77599 0.82200 0.81425 1.20434 1.21267 1.19801 1.20058 0.85246 0.86192 0.91766 1.68715 1.23281 1.07382 1.25687 1.24737 0.91133 0.98740 0.84365 1.68446 1.10395 1.15075 1.30248 1.23043 0.95080 0.88773 0.94790 1.22619 1.02248 0.91901 0.98415 1.98352 1.77916 1.26106 1.97803 0.93032 0.93012 0.92667 0.91046 0.92175 0.93135 0.93173 0.90923 0.93255 0.93572 0.90145 0.94571 0.96253 0.92849 0.79048 0.81355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.19 37.16 0.34 -1.16 16 2 C -0.10 -1.14 2.92 -90.62 -0.26 -1.40 16 3 C -0.15 -1.73 8.95 37.16 0.33 -1.39 16 4 C -0.11 -1.60 4.66 -26.73 -0.12 -1.73 16 5 C 0.06 1.03 4.65 -3.82 -0.02 1.01 16 6 N -0.49 -10.25 3.94 -174.34 -0.69 -10.94 16 7 C 0.20 4.99 4.72 -4.98 -0.02 4.97 16 8 C -0.51 -14.19 8.95 -34.44 -0.31 -14.50 16 9 H 0.07 1.87 7.81 -52.48 -0.41 1.46 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 12 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 C 0.41 8.11 3.82 -154.70 -0.59 7.52 16 17 N -0.53 -10.41 9.38 -13.78 -0.13 -10.54 16 18 C 0.30 4.97 12.28 -92.20 -1.13 3.84 16 19 N -0.53 -8.57 10.43 -14.64 -0.15 -8.72 16 20 C 0.15 2.34 11.11 -17.25 -0.19 2.14 16 21 C -0.12 -2.13 6.38 -39.04 -0.25 -2.38 16 22 Cl -0.03 -0.51 28.58 -51.86 -1.48 -2.00 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 31 H 0.05 0.76 7.40 -51.93 -0.38 0.38 16 32 H 0.05 0.83 6.20 -51.93 -0.32 0.50 16 33 H 0.08 1.38 7.83 -51.93 -0.41 0.97 16 34 H 0.04 0.96 7.74 -51.93 -0.40 0.56 16 35 H 0.02 0.54 7.49 -51.93 -0.39 0.16 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.19 2.46 8.06 -52.49 -0.42 2.04 16 38 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 332.02 15.07 5.00 5.00 Total: -1.00 -30.12 332.02 -9.65 -39.77 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.59 Total: -2.24 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -2.33 Total: -1.50 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.23 Total: -55.82 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -2.00 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.12 -9.65 -39.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302672106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.938 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds