Wall clock time and date at job start Tue Mar 31 2020 06:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 C 1.53004 * 109.47088 * 119.99698 * 2 1 3 5 5 C 1.52999 * 109.46959 * 174.99485 * 4 2 1 6 6 N 1.46904 * 109.47047 * 180.02562 * 5 4 2 7 7 C 1.46901 * 111.00201 * 170.00503 * 6 5 4 8 8 C 1.50699 * 109.47159 * 199.59100 * 7 6 5 9 9 H 1.08008 * 119.99809 * 5.08033 * 8 7 6 10 10 C 1.37872 * 120.00343 * 185.08011 * 8 7 6 11 11 N 1.31522 * 119.99710 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00301 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.46855 * 90.00280 * 12 10 8 14 14 H 1.48502 * 109.47184 * 209.99962 * 12 10 8 15 15 H 1.48495 * 109.47167 * 330.00004 * 12 10 8 16 16 C 1.38609 * 110.99812 * 293.95839 * 6 5 4 17 17 N 1.32966 * 120.53238 * 296.89861 * 16 6 5 18 18 C 1.31768 * 120.69537 * 180.02562 * 17 16 6 19 19 N 1.31772 * 121.85917 * 359.97438 * 18 17 16 20 20 C 1.32560 * 121.01887 * 0.02562 * 19 18 17 21 21 C 1.38203 * 119.18281 * 359.97438 * 20 19 18 22 22 Cl 1.73603 * 120.84269 * 179.97438 * 21 20 19 23 23 H 1.09003 * 109.46582 * 300.00175 * 1 2 3 24 24 H 1.08995 * 109.47136 * 59.99858 * 1 2 3 25 25 H 1.08998 * 109.47511 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47228 * 239.99764 * 2 1 3 27 27 H 1.09002 * 109.47711 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46851 * 299.99921 * 3 2 1 29 29 H 1.08996 * 109.47059 * 59.99660 * 3 2 1 30 30 H 1.09011 * 109.46962 * 55.00063 * 4 2 1 31 31 H 1.08994 * 109.47197 * 295.00004 * 4 2 1 32 32 H 1.09004 * 109.47187 * 60.00511 * 5 4 2 33 33 H 1.08994 * 109.47590 * 300.00278 * 5 4 2 34 34 H 1.08995 * 109.46739 * 319.59014 * 7 6 5 35 35 H 1.08998 * 109.46974 * 79.58727 * 7 6 5 36 36 H 0.96994 * 119.99772 * 180.02562 * 11 10 8 37 37 H 1.07999 * 119.07078 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.40747 * 179.72529 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8311 1.1880 6 7 4.0544 -1.5241 2.3872 7 6 5.4789 -1.8589 2.2571 8 6 5.8293 -2.9516 3.2339 9 1 5.0546 -3.4138 3.8278 10 6 7.1388 -3.3613 3.3694 11 7 8.0821 -2.7980 2.6465 12 14 7.5733 -4.7153 4.5807 13 1 7.4921 -6.0328 3.9004 14 1 8.9535 -4.5033 5.0859 15 1 6.6197 -4.6861 5.7186 16 6 3.8237 -0.7688 3.5263 17 7 4.4040 0.4178 3.6790 18 6 4.1873 1.1382 4.7608 19 7 3.3953 0.7205 5.7276 20 6 2.7807 -0.4514 5.6488 21 6 2.9777 -1.2420 4.5325 22 17 2.1950 -2.7845 4.3849 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 3.1301 1.4425 -0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.9995 0.1675 1.1420 33 1 3.8531 -1.3940 0.3003 34 1 5.6804 -2.2006 1.2419 35 1 6.0806 -0.9751 2.4691 36 1 9.0033 -3.0865 2.7415 37 1 4.6725 2.0982 4.8578 38 1 2.1372 -0.7860 6.4490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302672106.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:51 Heat of formation + Delta-G solvation = 18.855728 kcal Electronic energy + Delta-G solvation = -20687.505969 eV Core-core repulsion = 17590.106565 eV Total energy + Delta-G solvation = -3097.399405 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.17406 -39.10010 -37.51785 -36.96052 -34.86134 -33.93881 -32.20881 -30.67789 -28.24207 -28.01589 -25.87757 -25.10985 -24.21303 -22.47335 -20.86219 -18.99778 -18.61234 -18.00939 -17.08317 -16.95865 -16.40137 -16.32099 -15.77700 -15.32754 -14.92543 -14.53726 -14.41430 -14.31238 -13.93228 -13.41258 -13.14356 -13.08141 -12.92428 -12.67504 -12.55646 -12.39166 -12.29465 -12.19333 -12.05378 -11.81254 -11.63359 -11.55718 -11.50056 -11.19146 -10.64195 -10.33174 -10.05778 -9.48532 -8.22660 -6.31838 -0.22794 -0.04579 1.12274 1.37526 1.38020 1.48703 2.34788 2.59979 2.70974 3.10544 3.17660 3.24636 3.68549 3.88384 3.99706 4.02805 4.15055 4.27717 4.46143 4.55580 4.63279 4.77204 4.79738 4.90456 4.97818 5.00838 5.10922 5.11695 5.16277 5.24804 5.31954 5.46186 5.48357 5.61816 5.82862 5.94889 6.20547 6.38597 6.82746 7.00350 7.37095 8.87925 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.014951 B = 0.006463 C = 0.005779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.329765 B = 4331.359201 C = 4844.306783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 C -0.144 4.144 4 C -0.094 4.094 5 C 0.059 3.941 6 N -0.491 5.491 7 C 0.215 3.785 8 C -0.522 4.522 9 H 0.067 0.933 10 C 0.008 3.992 11 N -0.930 5.930 12 Si 0.957 3.043 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.267 1.267 16 C 0.382 3.618 17 N -0.561 5.561 18 C 0.298 3.702 19 N -0.523 5.523 20 C 0.160 3.840 21 C -0.132 4.132 22 Cl -0.025 7.025 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.057 0.943 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.015 0.985 35 H -0.014 1.014 36 H 0.264 0.736 37 H 0.225 0.775 38 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.806 6.375 0.296 16.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.132 4.132 5 C -0.067 4.067 6 N -0.215 5.215 7 C 0.091 3.909 8 C -0.560 4.560 9 H 0.085 0.915 10 C -0.191 4.191 11 N -0.571 5.571 12 Si 0.782 3.218 13 H -0.194 1.194 14 H -0.209 1.209 15 H -0.192 1.192 16 C 0.144 3.856 17 N -0.280 5.280 18 C 0.009 3.991 19 N -0.237 5.237 20 C -0.005 4.005 21 C -0.165 4.165 22 Cl 0.004 6.996 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.033 0.967 35 H 0.004 0.996 36 H 0.073 0.927 37 H 0.241 0.759 38 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -14.493 6.663 0.349 15.955 hybrid contribution 0.956 -0.922 0.208 1.344 sum -13.537 5.741 0.558 14.715 Atomic orbital electron populations 1.21772 0.93756 1.02103 1.02061 1.21080 0.96776 0.96076 0.97234 1.21846 1.00516 0.95966 1.01821 1.21521 0.93013 1.00802 0.97898 1.22300 0.96458 0.96740 0.91219 1.60295 1.21495 1.39093 1.00600 1.19477 0.80129 0.94763 0.96549 1.21471 0.93151 1.19079 1.22312 0.91494 1.25784 0.96244 0.99146 0.97881 1.70076 1.01254 1.43665 1.42056 0.85554 0.77360 0.79562 0.79293 1.19442 1.20893 1.19178 1.20127 0.86722 0.86778 0.91952 1.68677 1.24261 1.07775 1.27270 1.25407 0.90742 0.99436 0.83477 1.68577 1.10188 1.15169 1.29799 1.23662 0.94316 0.87896 0.94653 1.22734 1.02584 0.92597 0.98595 1.98347 1.77670 1.25737 1.97833 0.93099 0.91344 0.92353 0.90639 0.93788 0.91200 0.93536 0.91266 0.94124 0.94386 0.90513 0.96730 0.99609 0.92740 0.75873 0.77568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.19 71.98 0.66 -1.95 16 2 C -0.09 -2.12 2.92 -10.79 -0.03 -2.15 16 3 C -0.14 -3.24 8.95 71.98 0.64 -2.59 16 4 C -0.09 -2.73 4.66 30.60 0.14 -2.59 16 5 C 0.06 2.13 4.65 86.30 0.40 2.53 16 6 N -0.49 -21.04 3.94 -705.49 -2.78 -23.82 16 7 C 0.22 11.37 4.72 85.56 0.40 11.77 16 8 C -0.52 -29.29 8.95 25.60 0.23 -29.06 16 9 H 0.07 3.70 7.81 -2.91 -0.02 3.68 16 10 C 0.01 0.45 5.46 84.65 0.46 0.91 16 11 N -0.93 -55.84 13.29 21.45 0.28 -55.56 16 12 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 15 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 16 C 0.38 15.32 3.82 133.17 0.51 15.83 16 17 N -0.56 -22.04 9.38 -197.51 -1.85 -23.89 16 18 C 0.30 9.53 12.28 180.90 2.22 11.75 16 19 N -0.52 -15.88 10.43 -200.24 -2.09 -17.97 16 20 C 0.16 4.69 11.11 84.57 0.94 5.63 16 21 C -0.13 -4.61 6.38 22.62 0.14 -4.46 16 22 Cl -0.02 -0.80 28.58 -2.72 -0.08 -0.88 16 23 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.04 1.12 6.57 -2.39 -0.02 1.10 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.04 1.24 7.40 -2.39 -0.02 1.23 16 32 H 0.04 1.42 6.20 -2.39 -0.01 1.40 16 33 H 0.08 2.75 7.83 -2.39 -0.02 2.73 16 34 H 0.01 0.82 7.74 -2.39 -0.02 0.80 16 35 H -0.01 -0.83 7.49 -2.39 -0.02 -0.84 16 36 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 37 H 0.23 5.35 8.06 -2.91 -0.02 5.33 16 38 H 0.21 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -65.24 332.02 3.28 -61.95 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 1.04 Total: 7.91 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.73 Total: 5.60 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -6.43 Total: -121.24 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -65.24 3.28 -61.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302672106.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.809 kcal (2) G-P(sol) polarization free energy of solvation -65.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds