Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48496 * 109.47059 * 87.09558 * 3 2 1 5 5 H 1.48498 * 109.46945 * 207.09997 * 3 2 1 6 6 H 1.48502 * 109.46861 * 327.09632 * 3 2 1 7 7 C 1.37876 * 119.99498 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00545 * 1.40860 * 7 2 1 9 9 C 1.50707 * 119.99516 * 181.40280 * 7 2 1 10 10 H 1.08994 * 109.47534 * 24.79347 * 9 7 2 11 11 C 1.52995 * 109.46800 * 144.79724 * 9 7 2 12 12 C 1.50703 * 109.47348 * 293.80633 * 11 9 7 13 13 O 1.21284 * 119.99752 * 0.02562 * 12 11 9 14 14 N 1.34769 * 120.00156 * 180.02562 * 12 11 9 15 15 C 1.46506 * 119.99929 * 179.97438 * 14 12 11 16 16 C 1.52995 * 109.47121 * 179.97438 * 15 14 12 17 17 F 1.39900 * 109.47655 * 300.00244 * 16 15 14 18 18 F 1.39902 * 109.47199 * 60.00212 * 16 15 14 19 19 C 1.50699 * 109.47126 * 264.79339 * 9 7 2 20 20 C 1.38237 * 120.00135 * 306.65264 * 19 9 7 21 21 C 1.38237 * 120.00124 * 179.80917 * 20 19 9 22 22 C 1.38241 * 119.99834 * 0.39586 * 21 20 19 23 23 C 1.38239 * 119.99727 * 359.85702 * 22 21 20 24 24 C 1.38229 * 120.00171 * 359.95425 * 23 22 21 25 25 H 0.96996 * 119.99967 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47798 * 53.80497 * 11 9 7 27 27 H 1.09003 * 109.47499 * 173.80495 * 11 9 7 28 28 H 0.97005 * 120.00648 * 359.97438 * 14 12 11 29 29 H 1.08999 * 109.46971 * 299.99300 * 15 14 12 30 30 H 1.08996 * 109.47159 * 59.99685 * 15 14 12 31 31 H 1.08999 * 109.47283 * 179.97438 * 16 15 14 32 32 H 1.07999 * 120.00352 * 359.97438 * 20 19 9 33 33 H 1.07995 * 120.00255 * 180.23001 * 21 20 19 34 34 H 1.07995 * 119.99860 * 179.82910 * 22 21 20 35 35 H 1.08003 * 119.99758 * 179.97438 * 23 22 21 36 36 H 1.08004 * 119.99873 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4353 2.0818 1.3982 5 1 3.5761 1.4231 -0.6378 6 1 1.4787 2.6341 -0.7606 7 6 2.0044 -1.1941 0.0005 8 1 1.4647 -2.1292 -0.0220 9 6 3.5112 -1.1943 0.0325 10 1 3.8652 -0.2666 0.4820 11 6 4.0035 -2.3828 0.8607 12 6 3.5996 -2.1936 2.3002 13 8 2.9787 -1.2057 2.6310 14 7 3.9284 -3.1222 3.2200 15 6 3.5362 -2.9380 4.6195 16 6 4.0284 -4.1266 5.4477 17 9 3.4593 -5.3059 4.9553 18 9 5.4223 -4.2100 5.3611 19 6 4.0434 -1.3066 -1.3729 20 6 3.6172 -2.3343 -2.1934 21 6 4.1024 -2.4350 -3.4839 22 6 5.0201 -1.5128 -3.9512 23 6 5.4502 -0.4881 -3.1289 24 6 4.9621 -0.3852 -1.8398 25 1 -0.4850 0.8400 0.0004 26 1 3.5604 -3.3017 0.4768 27 1 5.0895 -2.4475 0.7936 28 1 4.4247 -3.9126 2.9554 29 1 3.9795 -2.0191 5.0031 30 1 2.4503 -2.8734 4.6870 31 1 3.7371 -3.9893 6.4890 32 1 2.9031 -3.0570 -1.8271 33 1 3.7667 -3.2357 -4.1261 34 1 5.4013 -1.5931 -4.9584 35 1 6.1675 0.2322 -3.4939 36 1 5.2978 0.4156 -1.1976 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356244801.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = -122.231789 kcal Electronic energy + Delta-G solvation = -21983.057879 eV Core-core repulsion = 18295.451029 eV Total energy + Delta-G solvation = -3687.606850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.13736 -47.13064 -39.25302 -38.36661 -34.76335 -33.92904 -31.69072 -30.22216 -29.99859 -28.53952 -25.86510 -23.20622 -22.37148 -21.83241 -20.43036 -19.30586 -17.57350 -17.52907 -17.13510 -16.93344 -16.21548 -15.53913 -15.06429 -14.85307 -14.51771 -14.21974 -13.99007 -13.78897 -13.50216 -13.22039 -12.94986 -12.72017 -12.58010 -12.50097 -12.31403 -11.87507 -11.73929 -11.24115 -11.05876 -10.75350 -10.52772 -10.35632 -9.89052 -9.61691 -9.21534 -9.02216 -8.80844 -8.43421 -8.19695 -7.81524 -5.98388 -3.96126 2.10200 2.14767 3.34784 3.39760 3.43903 3.47886 3.50111 3.58314 4.01556 4.44338 4.52073 4.58182 4.64966 5.26757 5.42845 5.49961 5.52336 5.56455 5.68582 5.72126 5.92993 6.00209 6.08943 6.25258 6.32904 6.58388 6.64740 6.69025 6.83387 7.00988 7.14811 7.27031 7.57484 7.72855 7.82588 7.86705 8.52600 8.88213 9.00525 9.66315 11.14578 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.015788 B = 0.005313 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.038240 B = 5268.950625 C = 6263.796678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.085 3.915 3 Si 0.870 3.130 4 H -0.277 1.277 5 H -0.255 1.255 6 H -0.295 1.295 7 C -0.490 4.490 8 H 0.071 0.929 9 C 0.057 3.943 10 H 0.050 0.950 11 C -0.116 4.116 12 C 0.518 3.482 13 O -0.498 6.498 14 N -0.747 5.747 15 C 0.073 3.927 16 C 0.254 3.746 17 F -0.202 7.202 18 F -0.204 7.204 19 C -0.040 4.040 20 C -0.100 4.100 21 C -0.128 4.128 22 C -0.149 4.149 23 C -0.128 4.128 24 C -0.135 4.135 25 H 0.262 0.738 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.398 0.602 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.025 -7.572 5.520 14.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.117 4.117 3 Si 0.698 3.302 4 H -0.203 1.203 5 H -0.179 1.179 6 H -0.221 1.221 7 C -0.527 4.527 8 H 0.089 0.911 9 C 0.037 3.963 10 H 0.068 0.932 11 C -0.156 4.156 12 C 0.305 3.695 13 O -0.370 6.370 14 N -0.404 5.404 15 C -0.053 4.053 16 C 0.200 3.800 17 F -0.183 7.183 18 F -0.186 7.186 19 C -0.041 4.041 20 C -0.118 4.118 21 C -0.146 4.146 22 C -0.167 4.167 23 C -0.146 4.146 24 C -0.153 4.153 25 H 0.071 0.929 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.232 0.768 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.389 -6.714 5.748 13.640 hybrid contribution 0.495 0.478 -0.173 0.709 sum 10.884 -6.236 5.574 13.727 Atomic orbital electron populations 1.69888 1.06418 1.26797 1.50584 1.24889 0.94502 0.98885 0.93431 0.86952 0.80962 0.83951 0.78321 1.20261 1.17937 1.22138 1.20608 0.87148 0.94394 1.50508 0.91089 1.18131 0.97508 0.93883 0.86768 0.93194 1.21668 1.00104 1.02694 0.91135 1.20876 0.78713 0.82251 0.87672 1.90753 1.36741 1.28711 1.80774 1.45984 1.61201 1.26266 1.06948 1.22334 1.02802 0.96683 0.83434 1.22273 0.74638 0.82773 1.00287 1.93013 1.84455 1.50728 1.90143 1.93001 1.31269 1.96630 1.97660 1.20747 0.91615 0.92698 0.99053 1.20986 0.98799 0.98795 0.93227 1.21060 0.98169 0.99210 0.96176 1.20867 1.00034 0.96685 0.99115 1.20963 1.00660 0.98372 0.94575 1.21145 0.98394 0.99745 0.95993 0.92876 0.89551 0.91152 0.76751 0.88920 0.88592 0.86053 0.86170 0.87183 0.87442 0.87405 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.04 13.96 55.43 0.77 -27.27 16 2 C 0.09 2.49 5.47 -17.82 -0.10 2.40 16 3 Si 0.87 22.50 27.00 -169.99 -4.59 17.91 16 4 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 5 H -0.26 -6.08 4.72 56.52 0.27 -5.81 16 6 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 7 C -0.49 -13.34 6.88 -34.44 -0.24 -13.58 16 8 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 9 C 0.06 1.28 1.17 -92.92 -0.11 1.17 16 10 H 0.05 1.20 4.94 -51.93 -0.26 0.94 16 11 C -0.12 -2.13 4.97 -27.88 -0.14 -2.27 16 12 C 0.52 9.93 7.59 -10.99 -0.08 9.85 16 13 O -0.50 -11.95 15.02 5.55 0.08 -11.86 16 14 N -0.75 -10.82 5.42 -60.29 -0.33 -11.15 16 15 C 0.07 0.87 5.91 -4.04 -0.02 0.85 16 16 C 0.25 2.32 5.42 37.16 0.20 2.52 16 17 F -0.20 -2.27 17.20 2.25 0.04 -2.24 16 18 F -0.20 -2.18 17.20 2.25 0.04 -2.14 16 19 C -0.04 -0.84 4.65 -104.62 -0.49 -1.33 16 20 C -0.10 -1.94 8.93 -39.58 -0.35 -2.30 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.15 -2.42 10.05 -39.58 -0.40 -2.81 16 23 C -0.13 -2.18 10.05 -39.58 -0.40 -2.57 16 24 C -0.13 -2.62 8.70 -39.59 -0.34 -2.96 16 25 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 26 H 0.09 1.50 8.05 -51.93 -0.42 1.08 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.40 4.87 8.36 -40.82 -0.34 4.53 16 29 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.12 2.32 7.87 -52.49 -0.41 1.91 16 33 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 36 H 0.11 2.11 7.12 -52.48 -0.37 1.74 16 LS Contribution 313.99 15.07 4.73 4.73 Total: -1.00 -34.13 313.99 -6.57 -40.70 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.45 Total: 4.94 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: -2.86 Total: -13.63 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.45 Total: -38.42 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.08 Total: -4.38 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.59 Total: 17.91 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.13 -6.57 -40.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356244801.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.531 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds