Wall clock time and date at job start Tue Mar 31 2020 06:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.09001 * 109.46995 * 54.34967 * 3 2 1 5 5 C 1.50703 * 109.47158 * 174.35511 * 3 2 1 6 6 H 1.07996 * 120.00052 * 87.46654 * 5 3 2 7 7 C 1.37877 * 119.99694 * 267.46526 * 5 3 2 8 8 N 1.31514 * 119.99716 * 176.06631 * 7 5 3 9 9 Si 1.86800 * 120.00176 * 356.06588 * 7 5 3 10 10 H 1.48503 * 109.47284 * 275.08677 * 9 7 5 11 11 H 1.48496 * 109.47106 * 35.08908 * 9 7 5 12 12 H 1.48500 * 109.47245 * 155.08920 * 9 7 5 13 13 N 1.46500 * 109.47016 * 294.35292 * 3 2 1 14 14 C 1.34780 * 119.99800 * 85.00153 * 13 3 2 15 15 O 1.21551 * 120.00303 * 359.97438 * 14 13 3 16 16 C 1.47847 * 119.99752 * 180.02562 * 14 13 3 17 17 C 1.39569 * 120.14803 * 359.72110 * 16 14 13 18 18 C 1.37956 * 119.85572 * 179.74476 * 17 16 14 19 19 C 1.38356 * 120.14559 * 0.53485 * 18 17 16 20 20 C 1.50700 * 119.85748 * 179.76276 * 19 18 17 21 21 F 1.39898 * 109.46929 * 119.97608 * 20 19 18 22 22 F 1.39902 * 109.46906 * 239.97771 * 20 19 18 23 23 C 1.38368 * 120.29162 * 359.73884 * 19 18 17 24 24 C 1.37961 * 120.13994 * 359.97438 * 23 19 18 25 25 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 27 27 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 0.96999 * 120.00500 * 265.00098 * 13 3 2 32 32 H 1.08005 * 120.07028 * 0.02562 * 17 16 14 33 33 H 1.08003 * 119.92757 * 180.27032 * 18 17 16 34 34 H 1.08998 * 109.47053 * 359.97338 * 20 19 18 35 35 H 1.07996 * 119.93002 * 180.02562 * 23 19 18 36 36 H 1.08008 * 120.06882 * 179.97438 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 0.8351 5 6 3.5405 1.4448 0.1398 6 1 4.1648 1.3737 -0.7386 7 6 4.1163 1.5378 1.3891 8 7 5.4229 1.4620 1.5182 9 14 3.0406 1.7713 2.8983 10 1 2.7491 3.2161 3.0797 11 1 1.7676 1.0283 2.7186 12 1 3.7500 1.2553 4.0965 13 7 1.6658 2.0927 -1.2583 14 6 0.4497 2.6592 -1.3885 15 8 -0.3367 2.6302 -0.4621 16 6 0.0719 3.3149 -2.6586 17 6 0.9741 3.3542 -3.7227 18 6 0.6133 3.9630 -4.9069 19 6 -0.6358 4.5435 -5.0374 20 6 -1.0211 5.2115 -6.3321 21 9 -2.1495 4.5793 -6.8651 22 9 -1.3108 6.5592 -6.0933 23 6 -1.5329 4.5131 -3.9844 24 6 -1.1867 3.9023 -2.7968 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8280 1.5270 2.3971 31 1 2.2931 2.1156 -1.9978 32 1 1.9510 2.9050 -3.6208 33 1 1.3090 3.9902 -5.7326 34 1 -0.1950 5.1372 -7.0392 35 1 -2.5065 4.9677 -4.0927 36 1 -1.8878 3.8796 -1.9755 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358066942.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:16 Heat of formation + Delta-G solvation = -122.837533 kcal Electronic energy + Delta-G solvation = -21726.857295 eV Core-core repulsion = 18039.224178 eV Total energy + Delta-G solvation = -3687.633117 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.23704 -47.22328 -40.05098 -38.36622 -35.29328 -32.82936 -32.25001 -31.50675 -30.84969 -27.76743 -26.50313 -23.25788 -22.80072 -22.49581 -20.55615 -19.65293 -18.23737 -17.57442 -17.46929 -17.45208 -16.40595 -15.75454 -15.15044 -14.83053 -14.53553 -14.33461 -14.16551 -13.80017 -13.71875 -13.59834 -13.29322 -12.95544 -12.81885 -12.47004 -12.23358 -11.95386 -11.85889 -11.36692 -11.18892 -10.99241 -10.75812 -10.73991 -10.04580 -9.90548 -9.36282 -9.25760 -9.20562 -9.18496 -8.76560 -8.11415 -6.28628 -4.32948 0.59400 1.16406 2.96992 3.23003 3.31212 3.38138 3.42005 3.78923 3.89295 3.90912 4.25377 4.28226 4.69804 4.72079 4.77328 5.00586 5.13577 5.18790 5.35060 5.51601 5.74861 6.00536 6.02695 6.04497 6.08756 6.19109 6.26350 6.57685 6.62140 6.73957 6.89500 6.95097 7.22448 7.27834 7.46833 8.04926 8.45841 8.69870 8.83154 9.32873 10.82922 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029810 B = 0.003767 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.055911 B = 7431.632286 C = 7719.397798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.237 3.763 4 H 0.052 0.948 5 C -0.534 4.534 6 H 0.079 0.921 7 C 0.083 3.917 8 N -0.887 5.887 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.258 1.258 12 H -0.285 1.285 13 N -0.693 5.693 14 C 0.538 3.462 15 O -0.544 6.544 16 C -0.099 4.099 17 C -0.091 4.091 18 C -0.092 4.092 19 C -0.160 4.160 20 C 0.313 3.687 21 F -0.200 7.200 22 F -0.200 7.200 23 C -0.089 4.089 24 C -0.068 4.068 25 H 0.031 0.969 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.268 0.732 31 H 0.393 0.607 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.328 5.076 -14.678 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C 0.135 3.865 4 H 0.070 0.930 5 C -0.572 4.572 6 H 0.097 0.903 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.698 3.302 10 H -0.198 1.198 11 H -0.182 1.182 12 H -0.211 1.211 13 N -0.341 5.341 14 C 0.324 3.676 15 O -0.424 6.424 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.161 4.161 20 C 0.259 3.741 21 F -0.181 7.181 22 F -0.181 7.181 23 C -0.107 4.107 24 C -0.087 4.087 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.227 0.773 32 H 0.156 0.844 33 H 0.153 0.847 34 H 0.137 0.863 35 H 0.149 0.851 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.714 5.045 -13.853 18.225 hybrid contribution -0.158 0.208 0.453 0.523 sum -10.871 5.253 -13.400 18.037 Atomic orbital electron populations 1.21914 0.97399 0.98973 1.02029 1.22095 0.93699 0.99325 1.01376 1.19207 0.95663 0.89130 0.82492 0.93039 1.20987 0.88515 1.52623 0.95039 0.90306 1.24909 0.94880 0.93520 0.98869 1.69874 1.09627 1.48378 1.24467 0.86929 0.81315 0.79568 0.82368 1.19823 1.18222 1.21127 1.46554 1.14074 1.55138 1.18349 1.18231 0.83123 0.79456 0.86829 1.90742 1.50935 1.60084 1.40657 1.20508 0.95199 0.99478 0.95020 1.21418 0.99521 0.97853 0.92173 1.20851 0.94903 0.97104 0.98195 1.20472 0.96706 1.03224 0.95712 1.20429 0.85974 0.74325 0.93341 1.93017 1.55642 1.82112 1.87366 1.93021 1.94652 1.34787 1.95637 1.20930 0.99270 0.98173 0.92346 1.21310 0.95633 0.94370 0.97363 0.94985 0.93044 0.93213 0.92914 0.91932 0.92167 0.77265 0.84411 0.84741 0.86337 0.85088 0.84005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.53 37.16 0.32 -2.54 16 2 C -0.13 -2.66 5.54 -26.73 -0.15 -2.81 16 3 C 0.24 5.43 1.82 -69.08 -0.13 5.31 16 4 H 0.05 1.30 4.92 -51.93 -0.26 1.04 16 5 C -0.53 -13.89 9.05 -34.44 -0.31 -14.20 16 6 H 0.08 2.15 8.06 -52.49 -0.42 1.73 16 7 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 8 N -0.89 -25.59 13.96 55.43 0.77 -24.81 16 9 Si 0.87 21.10 26.69 -169.99 -4.54 16.56 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.26 -6.11 6.88 56.52 0.39 -5.72 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.69 -13.34 4.98 -55.88 -0.28 -13.62 16 14 C 0.54 10.03 6.37 -12.33 -0.08 9.95 16 15 O -0.54 -11.75 13.48 5.32 0.07 -11.68 16 16 C -0.10 -1.46 5.87 -104.97 -0.62 -2.07 16 17 C -0.09 -1.08 9.54 -39.19 -0.37 -1.45 16 18 C -0.09 -0.89 9.65 -39.64 -0.38 -1.27 16 19 C -0.16 -1.64 5.38 -104.53 -0.56 -2.20 16 20 C 0.31 2.68 5.45 36.01 0.20 2.88 16 21 F -0.20 -2.05 17.25 2.25 0.04 -2.01 16 22 F -0.20 -2.07 17.25 2.25 0.04 -2.03 16 23 C -0.09 -1.02 9.57 -39.64 -0.38 -1.40 16 24 C -0.07 -0.91 9.60 -39.18 -0.38 -1.29 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.07 7.88 -51.93 -0.41 0.66 16 27 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.37 7.90 -51.93 -0.41 0.96 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.39 6.56 6.63 -40.82 -0.27 6.29 16 32 H 0.14 1.44 6.41 -52.48 -0.34 1.10 16 33 H 0.13 0.84 7.94 -52.48 -0.42 0.42 16 34 H 0.12 0.59 7.87 -51.93 -0.41 0.18 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.14 1.91 7.65 -52.48 -0.40 1.51 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -30.87 310.08 -6.20 -37.07 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -4.04 Total: 4.78 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.94 Total: -8.92 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.50 Total: -38.44 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.07 Total: -11.68 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.08 Total: -4.04 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.54 Total: 16.56 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.87 -6.20 -37.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358066942.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.770 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds