Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99887 * 2 1 4 4 H 1.48502 * 109.46580 * 269.99727 * 3 2 1 5 5 H 1.48500 * 109.46932 * 29.99433 * 3 2 1 6 6 H 1.48494 * 109.47012 * 149.99566 * 3 2 1 7 7 C 1.37874 * 119.99962 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99910 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00211 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47354 * 179.97438 * 9 7 2 11 11 C 1.47009 * 111.00005 * 293.95629 * 10 9 7 12 12 C 1.53103 * 109.25978 * 177.60727 * 11 10 9 13 13 O 1.43018 * 109.25687 * 56.84170 * 12 11 10 14 14 C 1.43012 * 113.74344 * 301.33169 * 13 12 11 15 15 H 1.08996 * 109.50587 * 298.69584 * 14 13 12 16 16 C 1.50698 * 109.50640 * 178.60361 * 14 13 12 17 17 C 1.38224 * 119.99194 * 334.98099 * 16 14 13 18 18 C 1.38187 * 120.05276 * 180.02562 * 17 16 14 19 19 C 1.38492 * 120.02435 * 0.02562 * 18 17 16 20 20 F 1.35099 * 120.00962 * 180.02562 * 19 18 17 21 21 C 1.38397 * 119.97505 * 359.70525 * 19 18 17 22 22 C 1.38445 * 119.94720 * 0.54886 * 21 19 18 23 23 F 1.35104 * 120.01039 * 179.74548 * 22 21 19 24 24 C 1.47014 * 111.00309 * 170.31646 * 10 9 7 25 25 H 0.97004 * 120.00464 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47515 * 59.99798 * 9 7 2 27 27 H 1.09005 * 109.46831 * 300.00148 * 9 7 2 28 28 H 1.08996 * 109.51308 * 57.67112 * 11 10 9 29 29 H 1.08998 * 109.50369 * 297.53454 * 11 10 9 30 30 H 1.08998 * 109.50583 * 296.91215 * 12 11 10 31 31 H 1.08995 * 109.54384 * 176.80011 * 12 11 10 32 32 H 1.08000 * 119.97467 * 0.03889 * 17 16 14 33 33 H 1.08000 * 119.98617 * 180.02562 * 18 17 16 34 34 H 1.07999 * 120.03003 * 180.28950 * 21 19 18 35 35 H 1.09000 * 109.50761 * 62.45955 * 24 10 9 36 36 H 1.09000 * 109.50622 * 302.32726 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9715 -3.6540 -1.2537 12 6 3.9929 -4.7926 -1.1871 13 8 3.3111 -6.0234 -0.9311 14 6 2.5556 -6.0214 0.2832 15 1 3.2253 -5.8622 1.1283 16 6 1.8526 -7.3451 0.4406 17 6 1.5583 -8.1080 -0.6739 18 6 0.9132 -9.3216 -0.5311 19 6 0.5602 -9.7747 0.7291 20 9 -0.0700 -10.9616 0.8685 21 6 0.8593 -9.0144 1.8462 22 6 1.5009 -7.7961 1.7014 23 9 1.7889 -7.0505 2.7906 24 6 1.5197 -4.8953 0.2314 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6240 -2.5566 0.8903 28 1 3.4917 -2.7061 -1.3917 29 1 2.2927 -3.8225 -2.0896 30 1 4.7043 -4.5969 -0.3848 31 1 4.5245 -4.8615 -2.1361 32 1 1.8330 -7.7553 -1.6571 33 1 0.6842 -9.9170 -1.4025 34 1 0.5887 -9.3690 2.8297 35 1 0.8176 -5.0837 -0.5808 36 1 0.9800 -4.8535 1.1775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375307593.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = -103.700276 kcal Electronic energy + Delta-G solvation = -22054.446976 eV Core-core repulsion = 18367.643713 eV Total energy + Delta-G solvation = -3686.803263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.18151 -49.07134 -39.77241 -38.34590 -35.27778 -32.67385 -32.43610 -30.98040 -29.16859 -28.11321 -25.39317 -23.83002 -23.34496 -22.45757 -21.20838 -19.81989 -18.35554 -17.40906 -16.59942 -16.45984 -16.09805 -15.91407 -15.51959 -15.39998 -15.16371 -14.61862 -14.48311 -14.42069 -14.23264 -13.88032 -13.42721 -12.99718 -12.73510 -12.21385 -12.14077 -11.87168 -11.56641 -11.33965 -11.09272 -10.95966 -10.79569 -10.66719 -10.31405 -9.97967 -9.50417 -9.28309 -9.16547 -8.64953 -8.49322 -7.40759 -6.08037 -4.10254 0.75233 0.85874 3.17503 3.28340 3.34968 3.38960 3.65082 3.77990 4.24690 4.35242 4.45743 4.59783 4.67625 4.92967 5.03460 5.24696 5.29422 5.39989 5.52462 5.61379 5.66068 5.69667 5.74845 5.83367 5.90798 5.98618 6.04717 6.23171 6.42356 6.51239 6.58624 7.13585 7.23692 7.35120 7.70231 7.96532 8.06903 8.43080 8.96540 9.54298 11.02861 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.029147 B = 0.003793 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.419363 B = 7380.299702 C = 7727.126928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.533 5.533 11 C 0.026 3.974 12 C 0.065 3.935 13 O -0.385 6.385 14 C 0.138 3.862 15 H 0.080 0.920 16 C -0.118 4.118 17 C -0.036 4.036 18 C -0.166 4.166 19 C 0.124 3.876 20 F -0.134 7.134 21 C -0.194 4.194 22 C 0.141 3.859 23 F -0.124 7.124 24 C 0.032 3.968 25 H 0.262 0.738 26 H -0.007 1.007 27 H 0.032 0.968 28 H 0.095 0.905 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.151 0.849 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.035 0.965 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.490 -18.015 -0.668 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.259 5.259 11 C -0.102 4.102 12 C -0.012 4.012 13 O -0.304 6.304 14 C 0.080 3.920 15 H 0.097 0.903 16 C -0.120 4.120 17 C -0.054 4.054 18 C -0.185 4.185 19 C 0.105 3.895 20 F -0.113 7.113 21 C -0.213 4.213 22 C 0.121 3.879 23 F -0.102 7.102 24 C -0.097 4.097 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.167 0.833 35 H 0.053 0.947 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.655 -17.971 -0.345 18.342 hybrid contribution -0.394 0.990 -0.212 1.086 sum 3.261 -16.981 -0.557 17.300 Atomic orbital electron populations 1.69958 1.06103 1.26904 1.50717 1.24992 0.94871 0.99370 0.95305 0.86483 0.79820 0.82993 0.78052 1.20702 1.21201 1.19717 1.21119 0.93475 0.89802 1.50472 0.91805 1.19749 0.89978 0.87066 0.96316 1.62362 1.28132 1.02274 1.33107 1.22646 0.96599 0.99420 0.91561 1.22776 0.94161 0.83150 1.01085 1.87824 1.65601 1.36181 1.40825 1.20730 0.92690 0.89982 0.88638 0.90255 1.19830 1.02283 0.97932 0.91926 1.20804 0.93470 0.91805 0.99337 1.21232 1.02656 0.98362 0.96241 1.17308 0.96125 0.82333 0.93744 1.91520 1.79595 1.43504 1.96668 1.20945 1.05165 0.95150 1.00054 1.17039 0.98605 0.89650 0.82603 1.91564 1.91036 1.75349 1.52282 1.22623 0.95001 0.90415 1.01642 0.92832 0.98930 0.94994 0.88695 0.95072 0.92453 0.88800 0.83155 0.83985 0.83344 0.94720 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.51 -14.08 8.48 -34.44 -0.29 -14.37 16 8 H 0.06 1.73 7.12 -52.48 -0.37 1.35 16 9 C 0.19 5.01 4.72 -4.98 -0.02 4.98 16 10 N -0.53 -11.39 4.72 -235.76 -1.11 -12.50 16 11 C 0.03 0.49 5.46 -3.71 -0.02 0.47 16 12 C 0.06 0.97 7.01 37.21 0.26 1.23 16 13 O -0.39 -5.92 9.31 -35.23 -0.33 -6.24 16 14 C 0.14 2.14 2.80 -27.83 -0.08 2.07 16 15 H 0.08 1.28 7.79 -51.93 -0.40 0.87 16 16 C -0.12 -1.59 5.08 -104.55 -0.53 -2.12 16 17 C -0.04 -0.42 9.35 -39.61 -0.37 -0.79 16 18 C -0.17 -1.67 10.02 -39.51 -0.40 -2.07 16 19 C 0.12 1.34 7.30 -39.43 -0.29 1.05 16 20 F -0.13 -1.46 17.27 2.25 0.04 -1.42 16 21 C -0.19 -2.14 10.01 -39.45 -0.39 -2.54 16 22 C 0.14 1.81 7.24 -39.43 -0.29 1.53 16 23 F -0.12 -1.74 16.57 2.25 0.04 -1.70 16 24 C 0.03 0.59 4.91 -3.71 -0.02 0.57 16 25 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 26 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 27 H 0.03 0.89 8.04 -51.93 -0.42 0.47 16 28 H 0.09 1.86 6.80 -51.93 -0.35 1.51 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.15 1.65 7.35 -52.49 -0.39 1.26 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 1.48 8.09 -51.93 -0.42 1.06 16 LS Contribution 310.14 15.07 4.67 4.67 Total: -1.00 -29.57 310.14 -7.96 -37.53 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -4.45 Total: -2.42 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.53 Total: -8.50 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.38 Total: -38.20 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.33 Total: -6.24 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.08 Total: -3.12 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.57 -7.96 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375307593.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.173 kcal (2) G-P(sol) polarization free energy of solvation -29.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds