Wall clock time and date at job start Tue Mar 31 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00172 * 2 1 4 4 H 1.48495 * 109.46963 * 240.00566 * 3 2 1 5 5 H 1.48507 * 109.47080 * 0.02562 * 3 2 1 6 6 H 1.48490 * 109.47067 * 120.00251 * 3 2 1 7 7 C 1.37882 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99875 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.53125 * 109.52036 * 179.97438 * 9 7 2 11 11 C 1.53042 * 109.27654 * 182.44200 * 10 9 7 12 12 N 1.46845 * 109.52464 * 59.17895 * 11 10 9 13 13 C 1.46899 * 110.99960 * 174.15790 * 12 11 10 14 14 C 1.53006 * 109.47130 * 170.00085 * 13 12 11 15 15 N 1.46498 * 109.47074 * 180.02562 * 14 13 12 16 16 C 1.35044 * 126.03903 * 124.99781 * 15 14 13 17 17 C 1.35369 * 107.73108 * 180.02562 * 16 15 14 18 18 Cl 1.73603 * 126.04848 * 180.02562 * 17 16 15 19 19 C 1.39932 * 107.90776 * 0.02562 * 17 16 15 20 20 N 1.30854 * 108.21040 * 359.97438 * 19 17 16 21 21 C 1.46845 * 111.19990 * 298.25772 * 12 11 10 22 22 C 1.53035 * 109.52341 * 61.74235 * 21 12 11 23 23 H 0.97001 * 120.00004 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.57903 * 300.15753 * 9 7 2 25 25 H 1.08997 * 109.50330 * 62.49899 * 10 9 7 26 26 H 1.09002 * 109.53253 * 302.39656 * 10 9 7 27 27 H 1.08991 * 109.46203 * 299.16267 * 11 10 9 28 28 H 1.08998 * 109.45097 * 179.19013 * 11 10 9 29 29 H 1.09000 * 109.46913 * 49.99931 * 13 12 11 30 30 H 1.08995 * 109.47086 * 290.00254 * 13 12 11 31 31 H 1.09004 * 109.46993 * 59.99783 * 14 13 12 32 32 H 1.08995 * 109.46996 * 300.00527 * 14 13 12 33 33 H 1.08004 * 126.13237 * 0.02562 * 16 15 14 34 34 H 1.07997 * 125.89390 * 180.26353 * 19 17 16 35 35 H 1.08998 * 109.46376 * 181.75938 * 21 12 11 36 36 H 1.09000 * 109.46025 * 301.72777 * 21 12 11 37 37 H 1.08998 * 109.50471 * 180.88018 * 22 21 12 38 38 H 1.09001 * 109.50560 * 60.76562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 6 2.2450 -3.6639 0.0015 11 6 1.4750 -4.9851 -0.0589 12 7 0.6533 -5.0192 -1.2754 13 6 0.0070 -6.3283 -1.4377 14 6 -1.0264 -6.2509 -2.5634 15 7 -1.6714 -7.5563 -2.7248 16 6 -2.9997 -7.7966 -2.6845 17 6 -3.1845 -9.1240 -2.8753 18 17 -4.7122 -9.9478 -2.9127 19 6 -1.9263 -9.7147 -3.0370 20 7 -1.0192 -8.7759 -2.9472 21 6 -0.3404 -3.9380 -1.2754 22 6 0.3753 -2.5856 -1.2514 23 1 -0.4850 0.8401 0.0004 24 1 0.6219 -2.5569 0.8900 25 1 2.8428 -3.6323 0.9123 26 1 2.8996 -3.5842 -0.8665 27 1 0.8315 -5.0707 0.8165 28 1 2.1804 -5.8160 -0.0737 29 1 -0.4889 -6.6064 -0.5077 30 1 0.7594 -7.0767 -1.6861 31 1 -0.5305 -5.9727 -3.4934 32 1 -1.7788 -5.5024 -2.3150 33 1 -3.7754 -7.0615 -2.5281 34 1 -1.7369 -10.7636 -3.2111 35 1 -0.9537 -4.0085 -2.1737 36 1 -0.9755 -4.0285 -0.3942 37 1 -0.3627 -1.7835 -1.2357 38 1 1.0000 -2.4885 -2.1394 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397155376.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:08 Heat of formation + Delta-G solvation = 70.697254 kcal Electronic energy + Delta-G solvation = -19716.935038 eV Core-core repulsion = 16621.783650 eV Total energy + Delta-G solvation = -3095.151388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46072 -38.55688 -36.61945 -34.90037 -33.10207 -31.35019 -30.21434 -29.95872 -28.03989 -25.61585 -23.46032 -22.29551 -21.53610 -21.36043 -20.37540 -18.70724 -17.61113 -16.45203 -15.82235 -15.34450 -14.99920 -14.55782 -14.45286 -14.08471 -13.99564 -13.48183 -13.33374 -12.88746 -12.68009 -12.33027 -12.15260 -11.69274 -11.61381 -11.53533 -11.18808 -10.96340 -10.80294 -10.63600 -10.52744 -10.29282 -10.05281 -9.75069 -9.49016 -9.02687 -8.78161 -8.62235 -8.33450 -7.93120 -6.01431 -4.06557 1.53687 1.75459 2.37689 2.59385 3.30579 3.35139 3.38170 4.11796 4.42098 4.46739 4.52977 4.79321 4.83369 5.17990 5.24248 5.29017 5.36108 5.54656 5.69411 5.73750 5.83815 6.00529 6.04293 6.14894 6.21732 6.45379 6.54822 6.61727 6.78175 6.99850 7.06291 7.31084 7.34789 7.48903 7.53635 7.75386 7.98612 8.08932 8.43718 8.96779 9.58043 11.04843 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.039912 B = 0.002890 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.372260 B = 9685.004544 C =10150.970476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.511 4.511 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.107 4.107 11 C 0.063 3.937 12 N -0.531 5.531 13 C 0.046 3.954 14 C 0.129 3.871 15 N -0.355 5.355 16 C 0.076 3.924 17 C -0.194 4.194 18 Cl -0.048 7.048 19 C 0.059 3.941 20 N -0.277 5.277 21 C 0.046 3.954 22 C -0.104 4.104 23 H 0.260 0.740 24 H 0.020 0.980 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.026 0.974 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.183 0.817 34 H 0.190 0.810 35 H 0.058 0.942 36 H 0.025 0.975 37 H 0.094 0.906 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 -16.374 -5.301 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.549 4.549 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.065 4.065 12 N -0.257 5.257 13 C -0.082 4.082 14 C 0.008 3.992 15 N -0.137 5.137 16 C -0.073 4.073 17 C -0.232 4.232 18 Cl -0.020 7.020 19 C -0.128 4.128 20 N -0.099 5.099 21 C -0.081 4.081 22 C -0.143 4.143 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.044 0.956 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.200 0.800 34 H 0.206 0.794 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.112 0.888 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.808 -15.804 -5.711 17.780 hybrid contribution -1.207 0.519 0.730 1.503 sum -7.015 -15.286 -4.981 17.541 Atomic orbital electron populations 1.69856 1.05873 1.26466 1.51041 1.24967 0.94856 0.99033 0.95142 0.86682 0.79628 0.83223 0.78608 1.20283 1.21364 1.20362 1.21166 0.92889 0.90621 1.50233 0.92754 1.18683 0.92697 0.91805 0.93892 1.21692 0.98737 0.93488 1.00525 1.22125 0.95725 0.99624 0.89027 1.62123 1.23240 1.01115 1.39223 1.22289 0.96258 0.93894 0.95796 1.22169 0.97275 0.77896 1.01828 1.48660 1.03909 1.07651 1.53499 1.22316 0.87448 0.96668 1.00890 1.20754 0.88395 0.92404 1.21681 1.98320 1.27859 1.77961 1.97875 1.23872 0.88789 0.99982 1.00131 1.77513 1.20870 0.89132 1.22346 1.22466 0.93442 0.93617 0.98584 1.21678 1.00281 0.92681 0.99626 0.93025 0.96141 0.92985 0.92319 0.95603 0.92205 0.94905 0.89702 0.88159 0.87656 0.80007 0.79357 0.92361 0.95661 0.88805 0.93636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.80 11.37 55.43 0.63 -24.17 16 2 C 0.06 1.65 5.31 -17.81 -0.09 1.55 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.72 8.56 -34.44 -0.29 -14.01 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.05 1.15 2.16 -91.65 -0.20 0.95 16 10 C -0.11 -2.17 5.32 -26.64 -0.14 -2.31 16 11 C 0.06 1.08 5.42 -3.83 -0.02 1.06 16 12 N -0.53 -8.79 4.81 -234.68 -1.13 -9.92 16 13 C 0.05 0.64 5.46 -3.82 -0.02 0.62 16 14 C 0.13 1.50 5.76 -4.04 -0.02 1.48 16 15 N -0.36 -4.21 3.68 -61.32 -0.23 -4.44 16 16 C 0.08 0.78 11.43 -17.16 -0.20 0.58 16 17 C -0.19 -2.03 6.65 -39.97 -0.27 -2.29 16 18 Cl -0.05 -0.45 29.30 -51.86 -1.52 -1.97 16 19 C 0.06 0.63 12.02 -17.33 -0.21 0.42 16 20 N -0.28 -3.55 12.42 30.64 0.38 -3.17 16 21 C 0.05 0.81 4.85 -3.84 -0.02 0.80 16 22 C -0.10 -2.33 5.12 -26.65 -0.14 -2.47 16 23 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 24 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 29 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.11 1.10 6.14 -51.93 -0.32 0.78 16 33 H 0.18 1.36 8.06 -52.48 -0.42 0.94 16 34 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.06 0.88 5.81 -51.93 -0.30 0.58 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16 38 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -28.53 322.12 -9.20 -37.73 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -5.55 Total: -1.23 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -1.62 Total: -13.62 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.34 Total: -41.70 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.52 Total: -1.97 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.53 -9.20 -37.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397155376.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.424 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds