Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48497 * 109.47426 * 270.00336 * 3 2 1 5 5 H 1.48498 * 109.46985 * 30.00211 * 3 2 1 6 6 H 1.48495 * 109.47198 * 150.00043 * 3 2 1 7 7 C 1.37880 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00049 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.54240 * 300.10515 * 9 7 2 11 11 C 1.53129 * 109.50308 * 60.16172 * 9 7 2 12 12 C 1.53123 * 109.15931 * 177.55494 * 11 9 7 13 13 C 1.53039 * 109.31189 * 302.40768 * 12 11 9 14 14 N 1.46842 * 109.52266 * 59.15550 * 13 12 11 15 15 C 1.46910 * 110.99703 * 174.16402 * 14 13 12 16 16 C 1.53001 * 109.47153 * 66.04611 * 15 14 13 17 17 N 1.46493 * 109.46976 * 180.02562 * 16 15 14 18 18 C 1.35048 * 126.04059 * 124.71821 * 17 16 15 19 19 C 1.35370 * 107.72777 * 179.83791 * 18 17 16 20 20 Cl 1.73601 * 126.04245 * 180.16136 * 19 18 17 21 21 C 1.39919 * 107.91092 * 0.42417 * 19 18 17 22 22 N 1.30854 * 108.21531 * 359.73416 * 21 19 18 23 23 C 1.46849 * 111.20050 * 298.25785 * 14 13 12 24 24 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.49266 * 57.67185 * 11 9 7 26 26 H 1.08995 * 109.55725 * 297.47932 * 11 9 7 27 27 H 1.09002 * 109.50371 * 182.44317 * 12 11 9 28 28 H 1.09003 * 109.50070 * 62.36477 * 12 11 9 29 29 H 1.08995 * 109.46501 * 179.17754 * 13 12 11 30 30 H 1.09009 * 109.45500 * 299.14277 * 13 12 11 31 31 H 1.08996 * 109.46709 * 186.04933 * 15 14 13 32 32 H 1.09002 * 109.46552 * 306.04948 * 15 14 13 33 33 H 1.08995 * 109.47022 * 300.00315 * 16 15 14 34 34 H 1.09001 * 109.46710 * 59.99819 * 16 15 14 35 35 H 1.07999 * 126.13123 * 359.97438 * 18 17 16 36 36 H 1.08007 * 125.89450 * 179.71889 * 21 19 18 37 37 H 1.09001 * 109.46071 * 181.75754 * 23 14 13 38 38 H 1.09002 * 109.46350 * 301.73871 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6229 -2.5575 0.8883 11 6 0.3730 -2.5825 -1.2523 12 6 -0.3419 -3.9364 -1.2754 13 6 0.6981 -5.0586 -1.2390 14 7 1.5111 -4.9348 -0.0224 15 6 2.4283 -6.0740 0.1159 16 6 3.4581 -6.0400 -1.0151 17 7 4.3723 -7.1763 -0.8775 18 6 4.6310 -8.1068 -1.8214 19 6 5.5281 -8.9793 -1.3052 20 17 6.1929 -10.3616 -2.1182 21 6 5.8202 -8.5734 0.0016 22 7 5.1281 -7.4931 0.2587 23 6 2.2448 -3.6629 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 0.9964 -2.4845 -2.1410 26 1 -0.3655 -1.7810 -1.2340 27 1 -0.9350 -4.0193 -2.1862 28 1 -0.9955 -4.0177 -0.4069 29 1 0.1914 -6.0236 -1.2406 30 1 1.3422 -4.9852 -2.1153 31 1 2.9408 -6.0132 1.0760 32 1 1.8625 -7.0042 0.0643 33 1 2.9455 -6.1007 -1.9751 34 1 4.0238 -5.1096 -0.9635 35 1 4.2011 -8.1464 -2.8113 36 1 6.4995 -9.0668 0.6810 37 1 2.8614 -3.6143 0.8964 38 1 2.8816 -3.5961 -0.8833 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397829042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = 68.602870 kcal Electronic energy + Delta-G solvation = -19932.769887 eV Core-core repulsion = 16837.527680 eV Total energy + Delta-G solvation = -3095.242207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.42926 -38.68017 -36.59724 -34.76304 -32.98651 -31.61581 -30.16799 -29.98532 -27.64538 -25.03817 -24.49285 -21.96687 -21.49506 -21.33946 -20.69423 -18.61823 -17.47801 -16.48916 -15.73837 -15.18445 -14.93788 -14.62687 -14.38919 -14.29531 -13.75665 -13.51768 -13.20095 -13.04003 -12.52529 -12.25455 -12.21896 -11.90468 -11.66637 -11.58943 -11.20773 -10.97442 -10.74945 -10.69795 -10.53683 -10.17921 -9.91673 -9.76412 -9.56006 -9.15485 -8.78641 -8.66124 -8.35882 -7.80742 -6.02365 -4.08865 1.57924 1.78706 2.41430 2.62837 3.27773 3.35139 3.38114 4.25136 4.35635 4.46586 4.54120 4.78414 4.91893 5.15124 5.26287 5.28106 5.38965 5.50255 5.61197 5.66815 5.93546 6.00567 6.11208 6.18779 6.26003 6.39813 6.58686 6.61394 6.67127 6.85605 7.11255 7.28614 7.37833 7.48309 7.62809 7.71348 8.00642 8.10533 8.40986 8.95030 9.55968 11.03683 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.028859 B = 0.003266 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.014854 B = 8569.859190 C = 9120.037513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.112 4.112 12 C -0.118 4.118 13 C 0.057 3.943 14 N -0.527 5.527 15 C 0.050 3.950 16 C 0.091 3.909 17 N -0.351 5.351 18 C 0.072 3.928 19 C -0.193 4.193 20 Cl -0.050 7.050 21 C 0.058 3.942 22 N -0.274 5.274 23 C 0.061 3.939 24 H 0.260 0.740 25 H 0.030 0.970 26 H 0.092 0.908 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.181 0.819 36 H 0.190 0.810 37 H 0.063 0.937 38 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.791 -16.961 -4.732 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.054 0.946 11 C -0.150 4.150 12 C -0.156 4.156 13 C -0.071 4.071 14 N -0.250 5.250 15 C -0.080 4.080 16 C -0.031 4.031 17 N -0.132 5.132 18 C -0.077 4.077 19 C -0.232 4.232 20 Cl -0.022 7.022 21 C -0.129 4.129 22 N -0.096 5.096 23 C -0.065 4.065 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.198 0.802 36 H 0.207 0.793 37 H 0.082 0.918 38 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 5.967 -15.891 -3.528 17.337 hybrid contribution 1.311 0.148 -1.559 2.042 sum 7.278 -15.743 -5.087 18.075 Atomic orbital electron populations 1.69882 1.05854 1.26418 1.50483 1.24927 0.94830 0.98988 0.95031 0.86625 0.79932 0.83587 0.78037 1.20776 1.21204 1.19928 1.21125 0.92819 0.90620 1.50973 0.92829 1.18669 0.92568 0.90218 0.94942 0.94649 1.21677 1.00105 0.94741 0.98454 1.21685 0.97153 0.96306 1.00445 1.22136 0.95753 0.99205 0.90022 1.62303 1.22744 1.02222 1.37770 1.22505 0.92235 0.95623 0.97640 1.22907 0.90953 0.86349 1.02936 1.48644 1.33606 1.21459 1.09514 1.22294 0.98542 0.90526 0.96387 1.20736 1.08589 0.97849 0.96033 1.98316 1.84797 1.40365 1.78684 1.23873 0.99767 0.94398 0.94825 1.77546 1.09024 1.16183 1.06843 1.22431 0.96668 0.88376 0.99047 0.92995 0.95142 0.88975 0.93352 0.91916 0.92167 0.95748 0.89368 0.90883 0.88450 0.88550 0.80227 0.79342 0.91825 0.95956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 11.36 55.43 0.63 -24.19 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.76 8.56 -34.44 -0.29 -14.05 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 9 C 0.05 1.31 2.26 -91.69 -0.21 1.11 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.51 5.03 -26.60 -0.13 -2.64 16 12 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 13 C 0.06 0.89 5.05 -3.84 -0.02 0.87 16 14 N -0.53 -8.94 4.86 -234.66 -1.14 -10.08 16 15 C 0.05 0.69 5.54 -3.82 -0.02 0.67 16 16 C 0.09 1.13 5.81 -4.04 -0.02 1.11 16 17 N -0.35 -4.37 3.68 -61.33 -0.23 -4.59 16 18 C 0.07 0.76 11.43 -17.16 -0.20 0.56 16 19 C -0.19 -2.08 6.65 -39.98 -0.27 -2.35 16 20 Cl -0.05 -0.47 29.30 -51.86 -1.52 -1.99 16 21 C 0.06 0.65 12.02 -17.34 -0.21 0.44 16 22 N -0.27 -3.73 12.42 30.64 0.38 -3.35 16 23 C 0.06 1.21 4.06 -3.83 -0.02 1.20 16 24 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.09 2.35 6.16 -51.93 -0.32 2.03 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 30 H 0.02 0.36 6.76 -51.92 -0.35 0.01 16 31 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.10 1.05 6.61 -51.93 -0.34 0.71 16 34 H 0.10 1.33 6.51 -51.93 -0.34 0.99 16 35 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.19 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.06 1.28 8.12 -51.93 -0.42 0.86 16 38 H 0.02 0.43 6.61 -51.93 -0.34 0.09 16 LS Contribution 320.05 15.07 4.82 4.82 Total: -1.00 -28.37 320.05 -9.17 -37.54 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.45 Total: -0.28 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -1.64 Total: -13.77 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.36 Total: -42.20 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.52 Total: -1.99 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.37 -9.17 -37.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397829042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.140 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds