Wall clock time and date at job start Tue Mar 31 2020 05:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46547 * 299.99597 * 3 2 1 6 6 H 1.48497 * 109.46922 * 59.99771 * 3 2 1 7 7 C 1.37877 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 60.09647 * 9 7 2 11 11 C 1.53120 * 109.50009 * 299.99707 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 15 15 C 1.46892 * 111.00192 * 185.84212 * 14 13 12 16 16 C 1.53000 * 109.47415 * 66.05041 * 15 14 13 17 17 N 1.46497 * 109.47543 * 180.02562 * 16 15 14 18 18 C 1.35045 * 126.03904 * 124.71343 * 17 16 15 19 19 C 1.35378 * 107.72463 * 179.83849 * 18 17 16 20 20 Cl 1.73608 * 126.04247 * 180.17673 * 19 18 17 21 21 C 1.39926 * 107.91007 * 0.42290 * 19 18 17 22 22 N 1.30855 * 108.20997 * 359.73668 * 21 19 18 23 23 C 1.46848 * 111.19688 * 61.74516 * 14 13 12 24 24 H 0.96996 * 120.00390 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 26 26 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 27 27 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 28 28 H 1.09002 * 109.50248 * 297.64565 * 12 11 9 29 29 H 1.08997 * 109.46051 * 60.83848 * 13 12 11 30 30 H 1.09004 * 109.45969 * 180.80356 * 13 12 11 31 31 H 1.09001 * 109.47233 * 186.04625 * 15 14 13 32 32 H 1.09000 * 109.47464 * 306.04297 * 15 14 13 33 33 H 1.09001 * 109.46580 * 299.99983 * 16 15 14 34 34 H 1.09000 * 109.47412 * 59.99223 * 16 15 14 35 35 H 1.08000 * 126.13768 * 359.97094 * 18 17 16 36 36 H 1.08000 * 125.89301 * 179.72051 * 21 19 18 37 37 H 1.08999 * 109.46555 * 58.27446 * 23 14 13 38 38 H 1.08998 * 109.46337 * 178.25654 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6256 -2.5589 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2747 13 6 0.6944 -5.0564 1.2433 14 7 1.5101 -4.9357 0.0283 15 6 2.4274 -6.0752 -0.1053 16 6 1.6210 -7.3551 -0.3340 17 7 2.5359 -8.4917 -0.4666 18 6 2.5087 -9.6235 0.2695 19 6 3.5129 -10.4213 -0.1640 20 17 3.9055 -11.9958 0.4530 21 6 4.1819 -9.7500 -1.1934 22 7 3.5970 -8.5936 -1.3753 23 6 2.2438 -3.6639 0.0054 24 1 -0.4850 0.8400 -0.0004 25 1 -0.3679 -1.7788 1.2287 26 1 0.9907 -2.4808 2.1406 27 1 -0.9407 -4.0148 2.1844 28 1 -0.9975 -4.0170 0.4049 29 1 1.3366 -4.9809 2.1208 30 1 0.1876 -6.0214 1.2462 31 1 3.0927 -5.9087 -0.9526 32 1 3.0175 -6.1753 0.8057 33 1 0.9558 -7.5216 0.5133 34 1 1.0309 -7.2550 -1.2449 35 1 1.8099 -9.8522 1.0605 36 1 5.0341 -10.1219 -1.7428 37 1 2.8788 -3.5950 0.8887 38 1 2.8622 -3.6174 -0.8910 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397829043.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:16 Heat of formation + Delta-G solvation = 67.776134 kcal Electronic energy + Delta-G solvation = -19701.669192 eV Core-core repulsion = 16606.391136 eV Total energy + Delta-G solvation = -3095.278057 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.44689 -38.45826 -36.62589 -34.80704 -33.03088 -31.62204 -30.27653 -29.95523 -27.88321 -25.05519 -24.09100 -21.96327 -21.58824 -21.33877 -20.46000 -18.72260 -17.57937 -16.45522 -15.75764 -15.28072 -14.93770 -14.72326 -14.40598 -14.00019 -13.80358 -13.52485 -13.28587 -13.04205 -12.60992 -12.37768 -12.14261 -11.72275 -11.67567 -11.60415 -11.12172 -10.99323 -10.76155 -10.68970 -10.57560 -10.15990 -9.90976 -9.76313 -9.53276 -9.12989 -8.75608 -8.61882 -8.34870 -7.86388 -6.01158 -4.07340 1.54234 1.76052 2.38789 2.60027 3.27969 3.36266 3.39986 4.13200 4.41301 4.49165 4.55805 4.80092 4.93598 5.20187 5.25648 5.29183 5.36062 5.51130 5.61996 5.80687 5.87809 5.94398 6.13056 6.19311 6.31888 6.42255 6.59195 6.64052 6.67101 6.88115 7.13150 7.29906 7.35341 7.49665 7.64904 7.73206 8.02567 8.12219 8.43201 8.96694 9.57372 11.04919 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.039932 B = 0.002897 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.020143 B = 9663.279305 C =10104.306637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.515 4.515 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.035 0.965 11 C -0.112 4.112 12 C -0.117 4.117 13 C 0.057 3.943 14 N -0.535 5.535 15 C 0.046 3.954 16 C 0.135 3.865 17 N -0.355 5.355 18 C 0.073 3.927 19 C -0.193 4.193 20 Cl -0.049 7.049 21 C 0.059 3.941 22 N -0.274 5.274 23 C 0.070 3.930 24 H 0.259 0.741 25 H 0.092 0.908 26 H 0.030 0.970 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.182 0.818 36 H 0.190 0.810 37 H 0.021 0.979 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.970 -19.787 1.915 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.053 0.947 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.071 4.071 14 N -0.260 5.260 15 C -0.083 4.083 16 C 0.014 3.986 17 N -0.137 5.137 18 C -0.075 4.075 19 C -0.232 4.232 20 Cl -0.021 7.021 21 C -0.128 4.128 22 N -0.096 5.096 23 C -0.057 4.057 24 H 0.069 0.931 25 H 0.110 0.890 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.199 0.801 36 H 0.207 0.793 37 H 0.039 0.961 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.422 -18.559 0.903 18.738 hybrid contribution 1.050 -0.040 1.343 1.705 sum 3.472 -18.600 2.246 19.054 Atomic orbital electron populations 1.69886 1.05847 1.26283 1.50693 1.24928 0.94835 0.98991 0.95066 0.86566 0.80154 0.83891 0.77567 1.19835 1.20999 1.21082 1.21170 0.92887 0.90597 1.50705 0.92767 1.18677 0.92573 0.90203 0.94912 0.94664 1.21671 1.00113 0.94725 0.98503 1.21675 0.97070 0.96396 1.00352 1.22148 0.95845 0.98767 0.90316 1.61967 1.23887 1.02134 1.38048 1.22242 0.94653 0.89854 1.01584 1.21966 0.89545 0.82600 1.04480 1.48654 1.24601 1.14147 1.26270 1.22282 0.99747 0.87376 0.98127 1.20759 1.04213 0.92322 1.05923 1.98318 1.93707 1.23208 1.86863 1.23884 1.00397 0.91460 0.97067 1.77550 1.00194 1.19094 1.12743 1.22333 0.96475 0.87803 0.99058 0.93070 0.88960 0.95127 0.93391 0.91950 0.95624 0.92490 0.89509 0.94985 0.88299 0.88156 0.80108 0.79341 0.96098 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.95 11.35 55.43 0.63 -24.32 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.90 8.57 -34.44 -0.30 -14.19 16 8 H 0.05 1.45 7.75 -52.48 -0.41 1.05 16 9 C 0.06 1.34 2.27 -91.68 -0.21 1.13 16 10 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.56 5.02 -26.61 -0.13 -2.69 16 12 C -0.12 -2.14 6.10 -26.65 -0.16 -2.30 16 13 C 0.06 0.91 5.29 -3.84 -0.02 0.89 16 14 N -0.54 -9.16 4.66 -234.67 -1.09 -10.26 16 15 C 0.05 0.66 5.14 -3.83 -0.02 0.64 16 16 C 0.13 1.53 6.45 -4.04 -0.03 1.51 16 17 N -0.35 -4.17 3.68 -61.33 -0.23 -4.40 16 18 C 0.07 0.73 11.43 -17.16 -0.20 0.53 16 19 C -0.19 -2.00 6.65 -39.97 -0.27 -2.27 16 20 Cl -0.05 -0.45 29.30 -51.86 -1.52 -1.97 16 21 C 0.06 0.64 12.02 -17.34 -0.21 0.43 16 22 N -0.27 -3.61 12.42 30.64 0.38 -3.23 16 23 C 0.07 1.44 4.68 -3.83 -0.02 1.42 16 24 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.73 6.22 -51.93 -0.32 0.40 16 31 H 0.09 1.34 7.98 -51.93 -0.41 0.93 16 32 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 33 H 0.10 0.91 6.36 -51.93 -0.33 0.58 16 34 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 LS Contribution 323.20 15.07 4.87 4.87 Total: -1.00 -28.86 323.20 -9.20 -38.06 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -5.57 Total: -1.50 kcal Atomic # 6 Polarization: -11.63 SS G_CDS: -1.65 Total: -13.28 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.31 Total: -42.21 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.52 Total: -1.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.86 -9.20 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397829043.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.832 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds