Wall clock time and date at job start Tue Mar 31 2020 06:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47049 * 2 1 4 4 H 1.09001 * 109.47289 * 305.00191 * 3 2 1 5 5 F 1.39897 * 109.47422 * 65.00042 * 3 2 1 6 6 C 1.53006 * 109.47127 * 185.00237 * 3 2 1 7 7 N 1.46504 * 109.46883 * 180.02562 * 6 3 2 8 8 C 1.40004 * 119.99535 * 179.97438 * 7 6 3 9 9 C 1.38646 * 120.09854 * 0.02562 * 8 7 6 10 10 C 1.38288 * 120.00158 * 179.97438 * 9 8 7 11 11 C 1.38265 * 120.20466 * 0.04169 * 10 9 8 12 12 C 1.38250 * 120.19933 * 0.02562 * 11 10 9 13 13 C 1.38727 * 119.99243 * 359.67908 * 12 11 10 14 14 S 1.76200 * 120.10484 * 180.32322 * 13 12 11 15 15 C 1.81400 * 102.99870 * 0.27095 * 14 13 12 16 16 C 1.50701 * 109.47243 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99679 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00006 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99911 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99979 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47297 * 90.00131 * 20 18 16 22 22 H 1.48499 * 109.47208 * 209.99917 * 20 18 16 23 23 H 1.48494 * 109.47593 * 330.00098 * 20 18 16 24 24 H 1.09000 * 109.46959 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47250 * 300.00119 * 1 2 3 26 26 H 1.08998 * 109.47252 * 60.00195 * 1 2 3 27 27 H 1.08998 * 109.47250 * 239.99881 * 2 1 3 28 28 H 1.08998 * 109.47252 * 119.99805 * 2 1 3 29 29 H 1.09001 * 109.47002 * 299.99574 * 6 3 2 30 30 H 1.08993 * 109.46955 * 60.00011 * 6 3 2 31 31 H 0.96992 * 119.99966 * 359.97438 * 7 6 3 32 32 H 1.07989 * 120.00169 * 359.97127 * 9 8 7 33 33 H 1.08000 * 119.90173 * 180.02562 * 10 9 8 34 34 H 1.08002 * 119.90524 * 179.97438 * 11 10 9 35 35 H 1.08007 * 120.00140 * 179.97438 * 12 11 10 36 36 H 1.08996 * 109.47079 * 300.00418 * 15 14 13 37 37 H 1.09001 * 109.47130 * 60.00056 * 15 14 13 38 38 H 0.97001 * 120.00154 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6699 2.0680 1.1954 6 6 3.5649 1.4443 -0.1258 7 7 4.0532 2.8256 -0.1252 8 6 5.4254 3.0829 -0.2302 9 6 6.3238 2.0322 -0.3355 10 6 7.6786 2.2886 -0.4397 11 6 8.1421 3.5913 -0.4385 12 6 7.2538 4.6453 -0.3326 13 6 5.8924 4.3977 -0.2338 14 16 4.7570 5.7391 -0.1072 15 6 5.8381 7.1949 -0.1581 16 6 5.0023 8.4450 -0.0588 17 1 3.9283 8.3710 0.0268 18 6 5.6090 9.6830 -0.0762 19 7 4.8796 10.7739 0.0109 20 14 7.4667 9.8108 -0.2236 21 1 7.8460 9.8805 -1.6577 22 1 7.9354 11.0360 0.4724 23 1 8.0958 8.6176 0.3973 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.9995 0.9053 0.7161 30 1 3.8532 0.9571 -1.0571 31 1 3.4259 3.5617 -0.0520 32 1 5.9655 1.0134 -0.3361 33 1 8.3770 1.4689 -0.5221 34 1 9.2013 3.7860 -0.5197 35 1 7.6194 5.6617 -0.3315 36 1 6.5373 7.1576 0.6772 37 1 6.3930 7.2028 -1.0963 38 1 5.3063 11.6449 -0.0018 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442133770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:02 Heat of formation + Delta-G solvation = -42.737983 kcal Electronic energy + Delta-G solvation = -19256.687993 eV Core-core repulsion = 16138.741430 eV Total energy + Delta-G solvation = -3117.946564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.80710 -39.07441 -36.08401 -34.14979 -33.11730 -30.88519 -30.23991 -29.27616 -27.46586 -24.07133 -22.84793 -22.47596 -21.39400 -20.99926 -17.77436 -17.01905 -16.84805 -16.48189 -16.14456 -15.44524 -14.87495 -14.38126 -14.31839 -14.14233 -13.83061 -13.68487 -13.33817 -13.23018 -13.10251 -12.91500 -12.48055 -12.41299 -12.26473 -11.66953 -11.45540 -11.11374 -10.97731 -10.90709 -10.86353 -10.40119 -10.19700 -10.00352 -9.71091 -9.21755 -9.14977 -8.74549 -7.61429 -6.44479 -6.23330 -4.26745 1.61028 1.85159 2.39746 3.18855 3.26056 3.27435 3.34947 3.57989 4.08098 4.18365 4.26896 4.32583 4.54311 4.57904 4.95116 5.04745 5.08016 5.10894 5.25851 5.27326 5.42166 5.46888 5.53729 5.55158 5.72848 5.84469 5.89170 5.91882 6.15049 6.39505 6.49992 6.59573 6.60374 6.84782 7.03216 7.34967 7.45490 7.81885 8.22953 8.77250 9.31786 10.88474 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.018645 B = 0.004237 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.345695 B = 6606.117384 C = 8002.542688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.147 4.147 3 C 0.081 3.919 4 H 0.090 0.910 5 F -0.205 7.205 6 C 0.103 3.897 7 N -0.744 5.744 8 C 0.226 3.774 9 C -0.187 4.187 10 C -0.092 4.092 11 C -0.158 4.158 12 C -0.092 4.092 13 C -0.143 4.143 14 S -0.138 6.138 15 C 0.034 3.966 16 C -0.519 4.519 17 H 0.085 0.915 18 C 0.082 3.918 19 N -0.888 5.888 20 Si 0.876 3.124 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.264 1.264 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.407 0.593 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.042 0.958 37 H 0.037 0.963 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -22.445 -1.714 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C 0.044 3.956 4 H 0.108 0.892 5 F -0.186 7.186 6 C -0.023 4.023 7 N -0.377 5.377 8 C 0.118 3.882 9 C -0.212 4.212 10 C -0.114 4.114 11 C -0.180 4.180 12 C -0.118 4.118 13 C -0.259 4.259 14 S 0.107 5.893 15 C -0.113 4.113 16 C -0.558 4.558 17 H 0.102 0.898 18 C -0.123 4.123 19 N -0.526 5.526 20 Si 0.703 3.297 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.189 1.189 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.245 0.755 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.142 0.858 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.426 -22.309 -1.572 22.496 hybrid contribution 2.147 0.568 -0.102 2.223 sum -0.279 -21.741 -1.674 21.807 Atomic orbital electron populations 1.21763 0.94517 1.02267 1.02692 1.22063 0.97570 0.94894 1.04010 1.21866 0.94509 0.94316 0.84901 0.89218 1.92859 1.92743 1.84170 1.48814 1.21871 0.92766 0.85246 1.02370 1.44582 1.04263 1.06481 1.82371 1.17245 0.83774 0.91512 0.95671 1.20430 0.93042 0.96931 1.10757 1.20762 0.94560 0.96389 0.99685 1.20790 0.98993 0.92485 1.05714 1.21083 0.91479 0.99699 0.99498 1.21599 0.97649 0.95926 1.10768 1.85083 1.15474 0.97901 1.90860 1.21672 0.96834 0.93184 0.99647 1.20421 0.95347 0.87171 1.52844 0.89754 1.24829 0.98321 0.95146 0.93964 1.69857 1.35842 0.97867 1.48992 0.86827 0.85656 0.78295 0.78961 1.19736 1.20672 1.18909 0.92074 0.91951 0.92317 0.89870 0.90442 0.91367 0.90771 0.75549 0.86442 0.86576 0.86615 0.85785 0.94016 0.94492 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.83 37.16 0.37 -0.68 16 2 C -0.15 -1.00 5.70 -26.73 -0.15 -1.15 16 3 C 0.08 0.76 3.40 -26.73 -0.09 0.67 16 4 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 5 F -0.20 -2.63 16.62 2.25 0.04 -2.59 16 6 C 0.10 1.05 4.67 -4.04 -0.02 1.04 16 7 N -0.74 -10.71 5.61 -58.44 -0.33 -11.04 16 8 C 0.23 3.66 6.66 -83.49 -0.56 3.11 16 9 C -0.19 -2.58 9.31 -39.41 -0.37 -2.95 16 10 C -0.09 -1.23 10.04 -39.55 -0.40 -1.63 16 11 C -0.16 -2.37 10.04 -39.57 -0.40 -2.76 16 12 C -0.09 -1.66 9.36 -39.40 -0.37 -2.02 16 13 C -0.14 -2.69 6.12 -38.92 -0.24 -2.92 16 14 S -0.14 -2.97 20.37 -107.50 -2.19 -5.16 16 15 C 0.03 0.83 3.16 36.01 0.11 0.95 16 16 C -0.52 -14.72 9.68 -34.44 -0.33 -15.05 16 17 H 0.08 2.61 7.96 -52.49 -0.42 2.19 16 18 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 19 N -0.89 -26.69 13.96 55.43 0.77 -25.91 16 20 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.68 7.95 -51.93 -0.41 0.26 16 30 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 31 H 0.41 6.39 6.96 -40.82 -0.28 6.11 16 32 H 0.12 1.30 6.74 -52.49 -0.35 0.95 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.12 2.31 5.88 -52.48 -0.31 2.00 16 36 H 0.04 1.00 6.79 -51.93 -0.35 0.65 16 37 H 0.04 0.87 7.19 -51.92 -0.37 0.50 16 38 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -30.83 328.72 -9.41 -40.25 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.45 Total: 4.46 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -2.54 Total: -21.17 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.45 Total: -36.95 kcal Atomic # 9 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -2.19 Total: -5.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.83 -9.41 -40.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442133770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.489 kcal (2) G-P(sol) polarization free energy of solvation -30.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds