Wall clock time and date at job start Tue Mar 31 2020 06:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47005 * 2 1 4 4 H 1.09000 * 109.47033 * 54.99539 * 3 2 1 5 5 F 1.39909 * 109.46609 * 294.99841 * 3 2 1 6 6 C 1.52998 * 109.47508 * 174.99865 * 3 2 1 7 7 N 1.46491 * 109.47359 * 179.97438 * 6 3 2 8 8 C 1.40011 * 119.99970 * 179.97438 * 7 6 3 9 9 C 1.38642 * 120.09745 * 0.02821 * 8 7 6 10 10 C 1.38282 * 120.00072 * 179.97438 * 9 8 7 11 11 C 1.38269 * 120.20988 * 359.97438 * 10 9 8 12 12 C 1.38255 * 120.19230 * 0.02562 * 11 10 9 13 13 C 1.38721 * 119.99372 * 359.97438 * 12 11 10 14 14 S 1.76204 * 120.10251 * 180.02562 * 13 12 11 15 15 C 1.81408 * 102.99660 * 0.02562 * 14 13 12 16 16 C 1.50697 * 109.46731 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00413 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99796 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99739 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00037 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46983 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46863 * 119.99937 * 20 18 16 23 23 H 1.48498 * 109.47043 * 239.99497 * 20 18 16 24 24 H 1.08998 * 109.47518 * 60.00514 * 1 2 3 25 25 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47516 * 300.00493 * 1 2 3 27 27 H 1.08991 * 109.47378 * 239.99636 * 2 1 3 28 28 H 1.09000 * 109.47098 * 119.98840 * 2 1 3 29 29 H 1.09000 * 109.46802 * 59.99491 * 6 3 2 30 30 H 1.08998 * 109.47062 * 300.00136 * 6 3 2 31 31 H 0.96999 * 120.00366 * 0.02562 * 7 6 3 32 32 H 1.07997 * 119.99965 * 359.97438 * 9 8 7 33 33 H 1.08001 * 119.89555 * 180.02562 * 10 9 8 34 34 H 1.07996 * 119.90311 * 180.27979 * 11 10 9 35 35 H 1.07996 * 120.00071 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.46756 * 299.99607 * 15 14 13 37 37 H 1.08998 * 109.46984 * 59.99829 * 15 14 13 38 38 H 0.96999 * 119.99606 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 9 1.6698 2.0679 -1.1955 6 6 3.5647 1.4445 0.1258 7 7 4.0530 2.8257 0.1251 8 6 5.4252 3.0831 0.2313 9 6 6.3236 2.0324 0.3365 10 6 7.6784 2.2890 0.4406 11 6 8.1419 3.5917 0.4398 12 6 7.2534 4.6457 0.3353 13 6 5.8925 4.3978 0.2304 14 16 4.7576 5.7390 0.0964 15 6 5.8392 7.1947 0.1412 16 6 5.0039 8.4445 0.0353 17 1 3.9299 8.3705 -0.0508 18 6 5.6109 9.6825 0.0473 19 7 6.9189 9.7725 0.1517 20 14 4.5756 11.2317 -0.0847 21 1 3.1416 10.8610 -0.1915 22 1 4.7822 12.0695 1.1238 23 1 4.9801 11.9960 -1.2920 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5136 0.8901 29 1 3.9994 0.9054 -0.7160 30 1 3.8531 0.9572 1.0571 31 1 3.4257 3.5619 0.0519 32 1 5.9653 1.0136 0.3370 33 1 8.3768 1.4692 0.5221 34 1 9.2014 3.7862 0.5169 35 1 7.6188 5.6620 0.3346 36 1 6.3932 7.2069 1.0799 37 1 6.5391 7.1531 -0.6933 38 1 7.3458 10.6434 0.1605 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000442133771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:06 Heat of formation + Delta-G solvation = -47.647181 kcal Electronic energy + Delta-G solvation = -19197.928236 eV Core-core repulsion = 16079.768793 eV Total energy + Delta-G solvation = -3118.159443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 283.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.78362 -38.96412 -36.01516 -34.10339 -33.20676 -30.73183 -30.11774 -28.53140 -27.38851 -24.04657 -23.15791 -22.47134 -21.37220 -20.93766 -17.68782 -16.99246 -16.49905 -16.28542 -15.99484 -15.39965 -14.91643 -14.47951 -14.25023 -14.10953 -13.77749 -13.58329 -13.22959 -13.01040 -12.89294 -12.69993 -12.34764 -12.32795 -12.07876 -11.55403 -11.44229 -11.05150 -10.94491 -10.93956 -10.84344 -10.66195 -9.96089 -9.90427 -9.62487 -9.12073 -9.02473 -8.60626 -7.50074 -6.32086 -6.23787 -4.28811 1.73550 1.96815 2.56571 3.23141 3.30441 3.36385 3.43683 3.76398 4.19259 4.23429 4.32353 4.35003 4.56751 4.60349 4.97627 5.07432 5.13761 5.20566 5.29198 5.38904 5.47219 5.49401 5.55065 5.65345 5.85844 5.87282 5.90935 6.03262 6.30075 6.51451 6.72237 6.97803 7.01852 7.04847 7.15876 7.55585 7.69976 7.90356 7.94075 8.72583 9.34794 10.87543 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.016088 B = 0.004188 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.040589 B = 6684.125074 C = 8319.638246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.147 4.147 3 C 0.081 3.919 4 H 0.089 0.911 5 F -0.205 7.205 6 C 0.103 3.897 7 N -0.745 5.745 8 C 0.222 3.778 9 C -0.189 4.189 10 C -0.094 4.094 11 C -0.158 4.158 12 C -0.089 4.089 13 C -0.134 4.134 14 S -0.178 6.178 15 C 0.079 3.921 16 C -0.517 4.517 17 H 0.068 0.932 18 C 0.067 3.933 19 N -0.890 5.890 20 Si 0.907 3.093 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.281 1.281 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.407 0.593 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.043 0.957 37 H 0.043 0.957 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.713 -19.578 1.346 20.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.185 4.185 3 C 0.044 3.956 4 H 0.107 0.893 5 F -0.186 7.186 6 C -0.022 4.022 7 N -0.378 5.378 8 C 0.115 3.885 9 C -0.214 4.214 10 C -0.116 4.116 11 C -0.179 4.179 12 C -0.114 4.114 13 C -0.251 4.251 14 S 0.067 5.933 15 C -0.068 4.068 16 C -0.556 4.556 17 H 0.086 0.914 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.207 1.207 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.134 0.866 35 H 0.148 0.852 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.884 -19.529 1.218 20.743 hybrid contribution 0.818 1.167 -0.038 1.426 sum -6.066 -18.363 1.180 19.375 Atomic orbital electron populations 1.21762 0.94563 1.02245 1.02648 1.22064 0.97518 0.94943 1.04022 1.21867 0.94608 0.94254 0.84836 0.89277 1.92859 1.92750 1.84189 1.48838 1.21847 0.92643 0.85400 1.02312 1.44560 1.04325 1.06323 1.82591 1.17263 0.83697 0.91614 0.95918 1.20404 0.93072 0.96830 1.11061 1.20754 0.94520 0.96411 0.99932 1.20810 0.99055 0.92433 1.05630 1.21186 0.91419 1.00071 0.98726 1.21502 0.97540 0.95550 1.10515 1.84965 1.17545 0.99879 1.90959 1.21315 0.95445 0.89393 1.00674 1.20677 0.93716 0.88860 1.52358 0.91355 1.24958 0.95176 0.99102 0.94492 1.69960 1.08622 1.25090 1.49069 0.86279 0.80397 0.82070 0.77828 1.19393 1.20668 1.20661 0.91975 0.92085 0.92351 0.90438 0.89867 0.91444 0.90855 0.75605 0.86602 0.86694 0.86599 0.85169 0.93915 0.93905 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.83 37.16 0.37 -0.70 16 2 C -0.15 -1.03 5.70 -26.73 -0.15 -1.19 16 3 C 0.08 0.79 3.40 -26.73 -0.09 0.69 16 4 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 5 F -0.21 -2.68 16.62 2.25 0.04 -2.65 16 6 C 0.10 1.11 4.67 -4.05 -0.02 1.09 16 7 N -0.74 -11.18 5.61 -58.45 -0.33 -11.50 16 8 C 0.22 3.80 6.66 -83.49 -0.56 3.24 16 9 C -0.19 -2.78 9.31 -39.42 -0.37 -3.14 16 10 C -0.09 -1.35 10.04 -39.55 -0.40 -1.75 16 11 C -0.16 -2.54 10.04 -39.56 -0.40 -2.94 16 12 C -0.09 -1.71 9.36 -39.40 -0.37 -2.08 16 13 C -0.13 -2.67 6.12 -38.92 -0.24 -2.91 16 14 S -0.18 -3.96 20.37 -107.50 -2.19 -6.15 16 15 C 0.08 2.04 4.09 36.00 0.15 2.19 16 16 C -0.52 -14.46 9.13 -34.44 -0.31 -14.78 16 17 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 18 C 0.07 1.87 5.46 -17.81 -0.10 1.77 16 19 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 20 Si 0.91 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.71 7.95 -51.93 -0.41 0.29 16 30 H 0.07 0.66 7.95 -51.93 -0.41 0.25 16 31 H 0.41 6.61 6.96 -40.82 -0.28 6.32 16 32 H 0.12 1.37 6.74 -52.49 -0.35 1.02 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.13 2.69 5.88 -52.49 -0.31 2.38 16 36 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16 37 H 0.04 1.16 7.75 -51.93 -0.40 0.76 16 38 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -30.06 332.32 -9.73 -39.80 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -5.49 Total: 4.68 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -2.49 Total: -20.49 kcal Atomic # 7 Polarization: -36.83 SS G_CDS: 0.41 Total: -36.42 kcal Atomic # 9 Polarization: -2.68 SS G_CDS: 0.04 Total: -2.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -3.96 SS G_CDS: -2.19 Total: -6.15 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.06 -9.73 -39.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000442133771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.852 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds