Wall clock time and date at job start Tue Mar 31 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47035 * 2 1 4 4 H 1.08999 * 109.46773 * 305.00240 * 3 2 1 5 5 N 1.46502 * 109.47191 * 64.99520 * 3 2 1 6 6 C 1.34777 * 120.00243 * 205.00360 * 5 3 2 7 7 O 1.21582 * 119.99695 * 359.97438 * 6 5 3 8 8 C 1.47642 * 120.00100 * 180.02562 * 6 5 3 9 9 C 1.40012 * 119.89520 * 359.71874 * 8 6 5 10 10 C 1.36317 * 120.10760 * 179.76199 * 9 8 6 11 11 C 1.40889 * 119.88730 * 0.51651 * 10 9 8 12 12 C 1.41105 * 120.10136 * 179.71708 * 11 10 9 13 13 H 1.08003 * 119.99927 * 204.65048 * 12 11 10 14 14 C 1.40227 * 120.00144 * 24.64988 * 12 11 10 15 15 N 1.30645 * 119.99974 * 17.87209 * 14 12 11 16 16 Si 1.86805 * 119.99804 * 197.87511 * 14 12 11 17 17 H 1.48490 * 109.47325 * 0.02562 * 16 14 12 18 18 H 1.48511 * 109.46876 * 120.00063 * 16 14 12 19 19 H 1.48498 * 109.46945 * 239.99232 * 16 14 12 20 20 C 1.40889 * 119.79520 * 359.74139 * 11 10 9 21 21 C 1.36316 * 119.89149 * 359.97438 * 20 11 10 22 22 C 1.52995 * 109.47100 * 184.99668 * 3 2 1 23 23 F 1.39896 * 109.47371 * 304.99810 * 22 3 2 24 24 F 1.39894 * 109.47223 * 65.00167 * 22 3 2 25 25 H 1.09000 * 109.47086 * 60.00516 * 1 2 3 26 26 H 1.09006 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47808 * 299.99975 * 1 2 3 28 28 H 1.08994 * 109.47649 * 240.00119 * 2 1 3 29 29 H 1.09000 * 109.47086 * 119.99484 * 2 1 3 30 30 H 0.97008 * 119.99902 * 25.00225 * 5 3 2 31 31 H 1.08002 * 119.94753 * 0.02848 * 9 8 6 32 32 H 1.08000 * 120.05638 * 180.23156 * 10 9 8 33 33 H 0.97001 * 120.00010 * 180.02562 * 15 14 12 34 34 H 1.08005 * 120.05260 * 179.97438 * 20 11 10 35 35 H 1.08002 * 119.94483 * 179.97438 * 21 20 11 36 36 H 1.09006 * 109.47138 * 184.99809 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6523 2.0976 1.2518 6 6 1.5254 3.4385 1.2995 7 8 1.7331 4.1046 0.3038 8 6 1.1352 4.0987 2.5612 9 6 0.8919 3.3291 3.7052 10 6 0.5361 3.9345 4.8737 11 6 0.4029 5.3361 4.9260 12 6 0.0291 5.9669 6.1315 13 1 -0.4522 6.9335 6.1085 14 6 0.2823 5.3388 7.3594 15 7 1.1524 4.3667 7.4287 16 14 -0.6245 5.8920 8.8960 17 1 -1.5495 7.0016 8.5525 18 1 -1.4015 4.7536 9.4491 19 1 0.3564 6.3598 9.9081 20 6 0.6435 6.1058 3.7707 21 6 1.0045 5.4918 2.6084 22 6 3.5647 1.4444 -0.1256 23 9 4.1174 0.6575 0.8904 24 9 3.9307 0.9225 -1.3709 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.4869 1.5662 2.0463 31 1 0.9904 2.2544 3.6631 32 1 0.3523 3.3403 5.7566 33 1 1.3274 3.9320 8.2780 34 1 0.5422 7.1805 3.8060 35 1 1.1887 6.0810 1.7221 36 1 3.9354 2.4656 -0.0366 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452249964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:57 Heat of formation + Delta-G solvation = -142.778225 kcal Electronic energy + Delta-G solvation = -21836.684954 eV Core-core repulsion = 18148.187144 eV Total energy + Delta-G solvation = -3688.497810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 283.112 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.90472 -46.87884 -39.40478 -37.35513 -35.83119 -33.94905 -32.22358 -30.28120 -29.51664 -28.55888 -25.89607 -23.97989 -22.32383 -21.20404 -20.68106 -19.84841 -17.61039 -17.42469 -17.28152 -16.83744 -16.58223 -15.73031 -15.36026 -14.24145 -14.17822 -14.04939 -13.79506 -13.66712 -13.26442 -13.22856 -13.13207 -12.78217 -12.49157 -12.29749 -12.15180 -11.99014 -11.56676 -11.36677 -11.29838 -11.08998 -11.01846 -10.83501 -10.70352 -10.11350 -9.63352 -9.41719 -9.15202 -8.87882 -7.79471 -7.62488 -7.10347 -4.67246 2.11676 2.85200 2.91541 2.96963 2.97740 3.39773 3.64291 3.70128 3.98465 4.31742 4.36691 4.51741 4.86893 5.01342 5.08491 5.30535 5.49276 5.53056 5.59214 5.81388 5.84955 5.97833 6.05307 6.15770 6.24428 6.66991 6.71367 6.76213 6.96159 7.05954 7.36457 7.56052 7.70085 7.79494 7.99778 8.05746 8.33238 8.56293 8.68134 8.87200 9.81450 Molecular weight = 283.11amu Principal moments of inertia in cm(-1) A = 0.027586 B = 0.003726 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.753892 B = 7512.368213 C = 7728.703917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.106 3.894 4 H 0.113 0.887 5 N -0.731 5.731 6 C 0.573 3.427 7 O -0.573 6.573 8 C -0.288 4.288 9 C -0.061 4.061 10 C -0.178 4.178 11 C 0.129 3.871 12 C -0.439 4.439 13 H 0.086 0.914 14 C 0.074 3.926 15 N -0.769 5.769 16 Si 0.913 3.087 17 H -0.257 1.257 18 H -0.268 1.268 19 H -0.271 1.271 20 C -0.239 4.239 21 C -0.019 4.019 22 C 0.246 3.754 23 F -0.204 7.204 24 F -0.206 7.206 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.404 0.596 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.287 0.713 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.098 -7.716 -6.229 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C -0.001 4.001 4 H 0.131 0.869 5 N -0.384 5.384 6 C 0.369 3.631 7 O -0.455 6.455 8 C -0.293 4.293 9 C -0.080 4.080 10 C -0.197 4.197 11 C 0.126 3.874 12 C -0.467 4.467 13 H 0.104 0.896 14 C -0.148 4.148 15 N -0.392 5.392 16 Si 0.737 3.263 17 H -0.180 1.180 18 H -0.193 1.193 19 H -0.196 1.196 20 C -0.259 4.259 21 C -0.039 4.039 22 C 0.191 3.809 23 F -0.185 7.185 24 F -0.187 7.187 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.241 0.759 31 H 0.107 0.893 32 H 0.138 0.862 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.186 -7.435 -6.759 10.050 hybrid contribution -0.152 -0.227 1.151 1.183 sum 0.034 -7.662 -5.608 9.495 Atomic orbital electron populations 1.21727 0.94310 1.01835 1.02775 1.21790 0.97536 0.94087 1.03772 1.21817 0.90984 0.95910 0.91427 0.86878 1.45891 1.72698 1.07855 1.11988 1.18721 0.74876 0.80499 0.89033 1.90647 1.53442 1.64196 1.37242 1.18793 1.23833 0.94110 0.92546 1.20465 0.97867 0.96641 0.93025 1.20978 1.07098 0.94892 0.96758 1.17806 0.85614 0.91899 0.92115 1.19919 1.32121 1.04492 0.90141 0.89574 1.26121 0.93295 0.93693 1.01659 1.69746 1.23021 1.17861 1.28533 0.86161 0.80211 0.80067 0.79884 1.18005 1.19325 1.19601 1.20718 1.12759 0.98125 0.94253 1.20354 0.94173 0.92744 0.96602 1.22571 0.94765 0.92647 0.70933 1.92953 1.87427 1.77682 1.60466 1.92942 1.93022 1.89213 1.43569 0.92460 0.92326 0.91929 0.90042 0.90576 0.75936 0.89310 0.86162 0.90162 0.88320 0.88061 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.80 37.16 0.36 -1.15 16 2 C -0.13 -1.44 5.19 -26.73 -0.14 -1.58 16 3 C 0.11 1.42 2.17 -67.93 -0.15 1.27 16 4 H 0.11 1.60 7.58 -51.93 -0.39 1.21 16 5 N -0.73 -11.36 4.46 -54.81 -0.24 -11.60 16 6 C 0.57 11.34 7.73 -12.42 -0.10 11.24 16 7 O -0.57 -12.60 15.98 5.29 0.08 -12.52 16 8 C -0.29 -6.29 5.89 -104.73 -0.62 -6.90 16 9 C -0.06 -1.29 9.47 -39.61 -0.38 -1.67 16 10 C -0.18 -4.23 8.64 -39.27 -0.34 -4.57 16 11 C 0.13 3.19 5.58 -106.80 -0.60 2.60 16 12 C -0.44 -10.65 9.04 -37.75 -0.34 -10.99 16 13 H 0.09 2.00 7.91 -52.48 -0.42 1.58 16 14 C 0.07 1.68 5.14 -17.31 -0.09 1.59 16 15 N -0.77 -17.99 10.95 55.56 0.61 -17.38 16 16 Si 0.91 16.82 29.60 -169.99 -5.03 11.79 16 17 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 18 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 19 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 20 C -0.24 -5.62 9.73 -39.27 -0.38 -6.00 16 21 C -0.02 -0.44 9.52 -39.61 -0.38 -0.82 16 22 C 0.25 3.39 5.05 37.16 0.19 3.58 16 23 F -0.20 -2.97 16.70 2.25 0.04 -2.93 16 24 F -0.21 -2.80 16.93 2.25 0.04 -2.76 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 28 H 0.08 0.80 7.81 -51.93 -0.41 0.40 16 29 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 30 H 0.40 5.76 6.60 -40.82 -0.27 5.49 16 31 H 0.09 1.60 6.37 -52.49 -0.33 1.26 16 32 H 0.12 2.90 6.16 -52.49 -0.32 2.58 16 33 H 0.29 6.02 8.29 -40.82 -0.34 5.68 16 34 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 35 H 0.10 2.22 7.63 -52.49 -0.40 1.81 16 36 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 315.34 15.07 4.75 4.75 Total: -1.00 -26.59 315.34 -6.88 -33.47 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -4.18 Total: 10.57 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -2.95 Total: -13.40 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 0.36 Total: -28.98 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.08 Total: -5.69 kcal Atomic # 14 Polarization: 16.82 SS G_CDS: -5.03 Total: 11.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.59 -6.88 -33.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452249964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.308 kcal (2) G-P(sol) polarization free energy of solvation -26.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds